CSPI04G20550 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G20550
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon 297 family
Location	Chr4 : 18809754 .. 18815325 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGTTAATTTAGCGGATTAGTGAATTAGAAAAAAAGAAAAAGAGTAATTGGGGTGTTAGATTGTTTCGTTTACTTGTTAATTTTATATTAGATAAATTAGAAAATTAGTACTTTAAAATTAAAATAGACAAAAATGAAAATAAGTTATTCTTTTTTTCTTCTGAATCTGGCGGATAGTTCCTTCGATAGACTATTCAGACTAAATCGTCAGCGGCAAGTGATCAACCATCTCTGGCAACCAACGATCACTTCCGGCGACTTCCGGCGACTTCCGGACTCGGGGCAATAGCTGCTGGATTCAGGTATAACAATTTTGAATGGGAAGGGTTTGAAAATTTAGTACAAATGCTATCTAGGGATTTTTTTTTATTCATTTTATATCTGAGATTTGTTTTTTGTTCGATTACTCCTCCTTGCTTCCCTCCAAATGAACAAATTCATCGTGTCTCTAAAACTAGAACGATTGTTTGATTCTCAAAATTTGCCCAAAATCACGATCAATTTCCTGATACAATTTTAATGAAGAAACCACAACTCGGTAAAATCGAAAATGTTGAAAGGAAACGGAGGTACTTGGTTGGGGAATGAGAAGGTGATTGGAACCATAATGGTCATGAAAAGATTGTCATCCAATATAAGCCGGGAGAGTTCTTGAAGGACAGTGAAGATTTTAAAGATTGGATCAAACGTTTGGAATGCTACAGCAAAGGAATGCAATTCGTCGAAGTACGTGATGGTGAATGAAACCGATACTGGCGAGCATTTGAGATTGGATAAGGGAATCTCTAAGGTTTATTTATTCCGTTCCTCGTTTATTTCTCTCCGTTTCTCTTTTCCTCTCCACATCGTTTTCTATCTTTCTCGGCTTTTTTTTCTCTCTTTCTCTTCTCCGGCGCGTCATCACCATTATCGGCTTTCGTCTTCTCTCTCCCTCTTCGCCCGCTGTCTTCTCTCTTCTCCGGCTAAAGTTACAAAGTATGTGTTTCTCTATTCCTATATTTCTCTCTTCTCCGGCTCTGTCTCTCTATTTATCTCTTCCCCGATCTCCATCTTCTCCGATTCTCTTTCTCTTAACTTTTCTTCTCCGATTCTCTGCCTTCTCTCTTCTTCGGCTAAAGGTATGTGTTTCTGATTTTAACTTTACAAAAAAATCTATTCCCCTCCATCTTTTTATAAACAACTTCATTTTAATTTTCTGTGTTTGTTCCTCTCTCTGACCATAACCCATGCTCTAATTTTTTACATGTTTTTTTTTTTTTGGAGTTTTGGTTGCGTCTGACTTTTAGGTAGAGTACTGTACTTTGGTGACGGAAATTTGATGAAATTTAGTTCTCCTTTTACTTACTTTGAGCCCTTAGTTGTCTGTTATCTGCCATCTCCTTTCTGGGTTTTGATGCTGTAATACATTTTACTCAGTGTTAAAACTTGTGATGGATTCCTATTGGCTGCCCCTTTAAGCTGTGATTTTGGGGGTAATGAAATTTAACTCTTCTTATATGGGGAAAATCGTGAGATGTCCTTGTTATAGTGTGTTTCAAGAGAACTATAGTGCTATTTGCTGAAATTGGCAGATAAATTTTACATAATGTACCATGGAGTAGACATCTCTGCCTTGGCAATTTTTTGATGGCAAGAATATTTCTTCATAGAGAATAGCTGTTACTATTGATTGGTATTTCCGTGTATGAGAGGTGTTTGAGGAGTGCAACCTTGATATATCGTGGTGTACGTTTCAGTACAAGATTGAGTATTGGAGGAGTGTGCATTTAAGAATCTAATATCATTGTGCAATGGAAGATTTATGAAAGGAAACTTTGGACTTCAATTAGGAAAATAAACCTTCAAATTTGTGGCTTCTAACCCATGCTCTAACTATATATCAGTGTTTTAGAGCAATTTTAACCCCAAGAGGAAAATGGATTTGCTTGTGTTCAACAATGGAAATAAGTTTTCAGTTAACCTTAACCCCAAAAAGAAAATATCGAACAAATCCATGGTAGTGAGGTGAGAAATTATCCTACTTATCATTTACAAGATTTTAGAGAAAGGAGACATCAGCCCAGAGGTAGAGAAGAAGTGTTTAACTATTGACATTCTTCACTGTGAAATGTCATTGAACGTTTTTTTTGGTGTGCTGAAGGCTCGATTTCCTATTCTTAAGCAAATGCCTCCATACCCGATCAAAACACAAAAATATATATATACTGATAGCATGTTGCACAATTCACAATTATATTAGATTGAATGATTGTCAAGATGATCTATTCAACGACTTTAGCAATGAATCAATGAACGTTGGAGATGCACAAAATTTGTCGGTCAATCTCCAAAGTGATATGATTAAATTAGATGTGAGTCGACATCATCTAAGAGAAATGATCCGAGCGAGAGATGATATTGCCAATCAAATTTGGGCAACATTTGAACGATAGATACAATTTTATGTTATTGTTTTTCTTTGTGCACTGTGACTTGTTTGCATTAAATGATATAAACTTTTGATCATTTTCTTTTTTATGTTTAATGTAGGACATATTTTTTGTTTATTTTTTAATTAAATTAGATGTGAGTCGACATATTCTTAATGTATGACATTATTAAGAAAACAAGAAATAAGAAACAGGAAACGAGAAACCATTATTAAACACGTTTTCTGTTTTCTGTTTTTTTTTTTTCAAGAAACAAGAAACAAGAAACAGAAACAATTATTGTTAGACCACCACTGTTATTTACTTATAATAGAAGAAAGAAAAATATGTCACGTGAGGAACCAACAGTTAATTAGAAATTAGAAGAGGAAGTGGAGAGAGGAAAGAAGGGGTGACAGTTACTTGGAAGAGCAAGTTAAATCGATGAGAAGGGGAATGAAGAAGAGGGGCAGTTTTTATGAAAGGAGAGGTCTGCAATACTCCTTGAAAGATAGGGGAAGCAGAAGGCTGAAGTTTTGTGTTCTGGATTGCTTTTTAGTATTTTGTTTTGTGTGTTGTTTTGGTATTTTGGATTAGGAGGTTGACTTTGCTTGTTATTTGTGAATTATCTGTTACGTGACTCATTTCCTGAGGTTCACGATTTGCTTATTATTGTAAGTTGTGTTTGAATTATCAATATAATAGAAACACTACATCAATGTTCTATCAATTGTTATCAGAGCCCTAAAACCTGGGCATTCAGAAAAGATGGCGAAAAAAGAAAAAAAAGGTCTGGAACTTCTTGAGCAGAAATTTATGGAAATGCAAACAAAGTTCAAAAAAATACCGGTGATGGAGGAAAATTTAACTTTGATTTCGAAAAACATTGAGAATTTGAATGCGATGATAGCAAAGCAGCGACAACAACAATAGATGGTTGTGAAATATCTTGAAGGTATTATTCGAGAGAAGGCTTTGACATCGAAGGAAGACGAAGGATCTGTGAGTAGAGAGAAGAAAAGCGAAAATATATTAGTTGAACTCAACGATGAATTGAAGTTGCACCTGAAGAGCAATGAAAAATTGACTGAGCAGAGTAAGTTTAAGAAATTTGAAATACCGGTATTCAATGGCACGGATCCGGATTCTTGGTTATTCCGAGCGGATCGATTCTTCAAAATACACAGTTTTACTGATTCAGAGAAGTTGTCTGTGGCAATTATCAGTTTTGATGGACCGGCTATAGATTGGTATCGTTTTCAGGATGAATGTGAGGCTTTTAAGGATTGGGATGGTCTAAAAGAGAAGATGTTAACTTGTTTTCCAACAATAAGAGATGGATCTCTTGTGGGCCAATTTTTGACTATTAAACAGAAATTCATAGTGGAAGAATATCGCAATTTATTTGATTAAGTTTTAGCTCCTGTAGCCTTTCTACAGACAATTGTATTAGAAGAAACTTTTATGAATGGGCTTTACCCATGGCTGAAAACGGAAGTGTCTCTTTTGGAACCTAAGGGCTTGGCTGCAATGATGAAATTGGCATTAAAAATAGAACACAGAGATGGTTCGCAAAGAGGCTGGGTTCGTTAGCGTATATAAGAATAGGATTCAGTATAATTTGCCTAAAATCAAGGAAATTTCCAACAGCAATACTACAAATATACACCAGGGGGAAATACACCTATTAGAACGATAACATTGAAAGGGGTTATGCCGGGGGAGAACTGAAGGGAAGGGCCAACAAAAAGATTGTATGATGCTGAATTTCAATCTTGGAGAGAGAAGGGATTATGCTTTAGATGTGAAGAGAAATATTATGTTGGGCATCGTTGTAAAGTGAAAGAACAAAAGGAATTGAGAATGTTGGTTGTGCACGACAATGGGGAAGAATTAGAAATCATTGAAGATGACCCATATGATGAAGAATTGGAGGTTAAACCAATGGAGGTAGGAGCTGATGAAAATCTCAACATTGAGTTATCTATCAACTCAGTGGTGGGATTAAACAACTCTGGAACCATGAAAGTGAAGGGAAAAGTGAAGAATGAGGATGTTGTAGTGTTAATTGACTGTGGGGCTACCCACAATTTCATATCTGAGAAATTGGTGACTGCATTAAATCTTCCTTTGAAAACAACTACAACTTATGGAGTGATTCTTGGGCCAGGGACGACTATTAAAGGAAAAGGCGTGTGTGGCTAAGTGGAAATTTTGATTGGTGATTGGAAGATTATTGACAGTTTCTTGTCCTTAGAATTGAGAGGGGCGGATGTGATTCTTGGAATGCAGTGGTTGAAATCTTTAGGTGTCACTGAAGTGGACTGGAGGAAGTTAATTATGACTTTTCAGCATTATTGGAAGAGGATTACAATCAAAGGTGATCCTAGCTTAATGAAGATAAGGGTTAGTTTGAAACATATGATGAAGACTTGGGATAATGAAGATCAGAGTTATTTAATAGGGTGTCGAGCATTACACAGTAGTTTAACTATAGAAGAGATGTATGATGAGGAGACAAAACCCACAGCCGAAAATTTACTGCCCTCTCTGTTAACTAAGTTCGATGATGTGTTCAGTTGGCCCGAGACGCTACCACCGCAACGTGGGATTGAACATCATATCCATCTCAAACAAGGGACGAATCCAGTAAACGTGTCGCCATATAGATATGCACACAAACAGAAATAGGAAATGGAACGTTTGGTGGATGAGATGCTGGCTTCGGGAATTATTTGGCCAAGTACCAGTCCATATTCTAGTCCCGTGTTGTTGGTAAGAAGGAAAGATGGGAGTTGGCGTTTTTATGTCGATTATAGAGCGCTGAACAATGTAACAATCCCAGATAAATTTCCTATTCCAGTTATTGAAGAGCTCTTTAATGAACTTAATGGAGCGAATATGTTTTCAAAGATTGATATTAAAGCGAGATATCATCAAATTCGGATGAATCAAGAAGATGTGGAGAAGACAACTTTTAGAACTCATGAAGGGCATTATGAGTTCTTAGTTATGCCATTTGGGCTCACCAATGCCCCTTCAACTTTCCAAGCATTAATGAATTCAATCTTCAGGCCGTATATGAGGAGGTTTGTGTTGGTTTTCTTTGATGACATATTAGTTGCAGCAGAGGATTGGAAGAACACTTCCAGCATTTAG

mRNA sequence

ATGACTATTCAGACTAAATCGTCAGCGGCAAGTGATCAACCATCTCTGGCAACCAACGATCACTTCCGGCGACTTCCGGCGACTTCCGGACTCGGGGCAATAGCTGCTGGATTCAGAAACCACAACTCGGTAAAATCGAAAATGTTGAAAGGAAACGGAGGTACTTGGTTGGGGAATGAGAAGATTGGATCAAACGTTTGGAATGCTACAGCAAAGGAATGCAATTCGTCGAAGTACGTGATGGTGAATGAAACCGATACTGGCGAGCATTTGAGATTGGATAAGGGAATCTCTAAGGTTTATTTATTCCGTTCCTCGTTTATTTCTCTCCGTTTCTCTTTTCCTCTCCACATCGTTTTCTATCTTTCTCGGCTTTTTTTTCTCTCTTTCTCTTCTCCGGCGCGTCATCACCATTATCGGCTTTCGTCTTCTCTCTCCCTCTTCGCCCGCTGTCTTCTCTCTTCTCCGGCTAAAGTTACAAAGTATGTGTTTCTCTATTCCTATATTTCTCTCTTCTCCGGCTCTGTCTCTCTATTTATCTCTTCCCCGATCTCCATCTTCTCCGATTCTCTTTCTCTTAACTTTTCTTCTCCGATTCTCTGCCTTCTCTCTTCTTCGGCTAAAGGTAGAGTACTGTACTTTGGTGACGGAAATTTGATGAAATTTAGTTCTCCTTTTACTTACTTTGAGCCCTTAGTTGTCTGTTATCTGCCATCTCCTTTCTGGGTTTTGATGCTAGCCCTAAAACCTGGGCATTCAGAAAAGATGGCGAAAAAAGAAAAAAAAGGTCTGGAACTTCTTGAGCAGAAATTTATGGAAATGCAAACAAAGTTCAAAAAAATACCGATGGTTGTGAAATATCTTGAAGGTATTATTCGAGAGAAGGCTTTGACATCGAAGGAAGACGAAGGATCTGTGAGTAGAGAGAAGAAAAGCGAAAATATATTAGTTGAACTCAACGATGAATTGAAGTTGCACCTGAAGAGCAATGAAAAATTGACTGAGCAGAGTAAGTTTAAGAAATTTGAAATACCGGTATTCAATGGCACGGATCCGGATTCTTGGTTATTCCGAGCGGATCGATTCTTCAAAATACACAGTTTTACTGATTCAGAGAAGTTGTCTGTGGCAATTATCAGTTTTGATGGACCGGCTATAGATTGGTATCGTTTTCAGGATGAATGTGAGGCTTTTAAGGATTGGGATGGTCTAAAAGAGAAGATGTTAACTTGTTTTCCAACAATAAGAGATGGATCTCTTACAATTGTATTAGAAGAAACTTTTATGAATGGGCTTTACCCATGGCTGAAAACGGAAGTGTCTCTTTTGGAACCTAAGGGCTTGGCTGCAATGATGAAATTGGCATTAAAAATAGAACACAGAGATGGTTCGCAAAGAGGCTGGAACGATAACATTGAAAGGGGTTATGCCGGGGGAGAACTGAAGGGAAGGGCCAACAAAAAGATTGAATTGAGAATGTTGGTTGTGCACGACAATGGGGAAGAATTAGAAATCATTGAAGATGACCCATATGATGAAGAATTGGAGGTTAAACCAATGGAGGTAGGAGCTGATGAAAATCTCAACATTGAGTTATCTATCAACTCAGTGGTGGGATTAAACAACTCTGGAACCATGAAAGTGAAGGGAAAAGTGAAGAATGAGGATGTTGTAGTGTTAATTGACTGTGGGGCTACCCACAATTTCATATCTGAGAAATTGGTGACTGCATTAAATCTTCCTTTGAAAACAACTACAACTTATGGAGTGATTCTTGGGCCAGGGACGACTATTAAAGGAAAAGGCTGGTTGAAATCTTTAGGTGTCACTGAAGTGGACTGGAGGAAGTTAATTATGACTTTTCAGCATTATTGGAAGAGGATTACAATCAAAGGTGATCCTAGCTTAATGAAGATAAGGGTTAGTTTGAAACATATGATGAAGACTTGGGATAATGAAGATCAGAGTTATTTAATAGGGTGTCGAGCATTACACAGTAGTTTAACTATAGAAGAGATGTATGATGAGGAGACAAAACCCACAGCCGAAAATTTACTGCCCTCTCTGTTAACTAAGTTCGATGATGTGTTCAGTTGGCCCGAGACGCTACCACCGCAACGTGGGATTGAACATCATATCCATCTCAAACAAGGGACGAATCCAGAAATGGAACGTTTGGTGGATGAGATGCTGGCTTCGGGAATTATTTGGCCAAGTACCAGTCCATATTCTAGTCCCGTGTTGTTGGTAAGAAGGAAAGATGGGAGTTGGCGTTTTTATGTCGATTATAGAGCGCTGAACAATGTAACAATCCCAGATAAATTTCCTATTCCAGTTATTGAAGAGCTCTTTAATGAACTTAATGGAGCGAATATGTTTTCAAAGATTGATATTAAAGCGAGATATCATCAAATTCGGATGAATCAAGAAGATGTGGAGAAGACAACTTTTAGAACTCATGAAGGGCATTATGAGTTCTTAGTTATGCCATTTGGGCTCACCAATGCCCCTTCAACTTTCCAAGCATTAATGAATTCAATCTTCAGGCCGTATATGAGGAGGTTTGTGTTGGTTTTCTTTGATGACATATTAGTTGCAGCAGAGGATTGGAAGAACACTTCCAGCATTTAG

Coding sequence (CDS)

ATGACTATTCAGACTAAATCGTCAGCGGCAAGTGATCAACCATCTCTGGCAACCAACGATCACTTCCGGCGACTTCCGGCGACTTCCGGACTCGGGGCAATAGCTGCTGGATTCAGAAACCACAACTCGGTAAAATCGAAAATGTTGAAAGGAAACGGAGGTACTTGGTTGGGGAATGAGAAGATTGGATCAAACGTTTGGAATGCTACAGCAAAGGAATGCAATTCGTCGAAGTACGTGATGGTGAATGAAACCGATACTGGCGAGCATTTGAGATTGGATAAGGGAATCTCTAAGGTTTATTTATTCCGTTCCTCGTTTATTTCTCTCCGTTTCTCTTTTCCTCTCCACATCGTTTTCTATCTTTCTCGGCTTTTTTTTCTCTCTTTCTCTTCTCCGGCGCGTCATCACCATTATCGGCTTTCGTCTTCTCTCTCCCTCTTCGCCCGCTGTCTTCTCTCTTCTCCGGCTAAAGTTACAAAGTATGTGTTTCTCTATTCCTATATTTCTCTCTTCTCCGGCTCTGTCTCTCTATTTATCTCTTCCCCGATCTCCATCTTCTCCGATTCTCTTTCTCTTAACTTTTCTTCTCCGATTCTCTGCCTTCTCTCTTCTTCGGCTAAAGGTAGAGTACTGTACTTTGGTGACGGAAATTTGATGAAATTTAGTTCTCCTTTTACTTACTTTGAGCCCTTAGTTGTCTGTTATCTGCCATCTCCTTTCTGGGTTTTGATGCTAGCCCTAAAACCTGGGCATTCAGAAAAGATGGCGAAAAAAGAAAAAAAAGGTCTGGAACTTCTTGAGCAGAAATTTATGGAAATGCAAACAAAGTTCAAAAAAATACCGATGGTTGTGAAATATCTTGAAGGTATTATTCGAGAGAAGGCTTTGACATCGAAGGAAGACGAAGGATCTGTGAGTAGAGAGAAGAAAAGCGAAAATATATTAGTTGAACTCAACGATGAATTGAAGTTGCACCTGAAGAGCAATGAAAAATTGACTGAGCAGAGTAAGTTTAAGAAATTTGAAATACCGGTATTCAATGGCACGGATCCGGATTCTTGGTTATTCCGAGCGGATCGATTCTTCAAAATACACAGTTTTACTGATTCAGAGAAGTTGTCTGTGGCAATTATCAGTTTTGATGGACCGGCTATAGATTGGTATCGTTTTCAGGATGAATGTGAGGCTTTTAAGGATTGGGATGGTCTAAAAGAGAAGATGTTAACTTGTTTTCCAACAATAAGAGATGGATCTCTTACAATTGTATTAGAAGAAACTTTTATGAATGGGCTTTACCCATGGCTGAAAACGGAAGTGTCTCTTTTGGAACCTAAGGGCTTGGCTGCAATGATGAAATTGGCATTAAAAATAGAACACAGAGATGGTTCGCAAAGAGGCTGGAACGATAACATTGAAAGGGGTTATGCCGGGGGAGAACTGAAGGGAAGGGCCAACAAAAAGATTGAATTGAGAATGTTGGTTGTGCACGACAATGGGGAAGAATTAGAAATCATTGAAGATGACCCATATGATGAAGAATTGGAGGTTAAACCAATGGAGGTAGGAGCTGATGAAAATCTCAACATTGAGTTATCTATCAACTCAGTGGTGGGATTAAACAACTCTGGAACCATGAAAGTGAAGGGAAAAGTGAAGAATGAGGATGTTGTAGTGTTAATTGACTGTGGGGCTACCCACAATTTCATATCTGAGAAATTGGTGACTGCATTAAATCTTCCTTTGAAAACAACTACAACTTATGGAGTGATTCTTGGGCCAGGGACGACTATTAAAGGAAAAGGCTGGTTGAAATCTTTAGGTGTCACTGAAGTGGACTGGAGGAAGTTAATTATGACTTTTCAGCATTATTGGAAGAGGATTACAATCAAAGGTGATCCTAGCTTAATGAAGATAAGGGTTAGTTTGAAACATATGATGAAGACTTGGGATAATGAAGATCAGAGTTATTTAATAGGGTGTCGAGCATTACACAGTAGTTTAACTATAGAAGAGATGTATGATGAGGAGACAAAACCCACAGCCGAAAATTTACTGCCCTCTCTGTTAACTAAGTTCGATGATGTGTTCAGTTGGCCCGAGACGCTACCACCGCAACGTGGGATTGAACATCATATCCATCTCAAACAAGGGACGAATCCAGAAATGGAACGTTTGGTGGATGAGATGCTGGCTTCGGGAATTATTTGGCCAAGTACCAGTCCATATTCTAGTCCCGTGTTGTTGGTAAGAAGGAAAGATGGGAGTTGGCGTTTTTATGTCGATTATAGAGCGCTGAACAATGTAACAATCCCAGATAAATTTCCTATTCCAGTTATTGAAGAGCTCTTTAATGAACTTAATGGAGCGAATATGTTTTCAAAGATTGATATTAAAGCGAGATATCATCAAATTCGGATGAATCAAGAAGATGTGGAGAAGACAACTTTTAGAACTCATGAAGGGCATTATGAGTTCTTAGTTATGCCATTTGGGCTCACCAATGCCCCTTCAACTTTCCAAGCATTAATGAATTCAATCTTCAGGCCGTATATGAGGAGGTTTGTGTTGGTTTTCTTTGATGACATATTAGTTGCAGCAGAGGATTGGAAGAACACTTCCAGCATTTAG

Homology

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BLAST of CSPI04G20550 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-34
Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 1


Query: 715 LKQGTNPEMERLVDEMLASGIIWPSTSPYSSPVLLVRRKDGS-----WRFYVDYRALNNV 774
           L Q    E+E  V EML  G+I  S SPY+SP  +V +K  +     +R  +DYR LN +
Sbjct: 214 LAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEI 273

Query: 775 TIPDKFPIPVIEELFNELNGANMFSKIDIKARYHQIRMNQEDVEKTTFRTHEGHYEFLVM 834
           TIPD++PIP ++E+  +L     F+ ID+   +HQI M++E + KT F T  GHYE+L M
Sbjct: 274 TIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRM 333

Query: 835 PFGLTNAPSTFQALMNSIFRPYMRRFVLVFFDDILV 866
           PFGL NAP+TFQ  MN+I RP + +  LV+ DDI++
Sbjct: 334 PFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIII 369

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BLAST of CSPI04G20550 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-34
Identity = 75/167 (44.91%), Postives = 104/167 (62.28%), Query Frame = 1


Query: 714 HLKQGTNPEMERLVDEMLASGIIWPSTSPYSSPVLLVRRKDGSWRFYVDYRALNNVTIPD 773
           H+ +    E+ ++V ++L +  I PS SP SSPV+LV +KDG++R  VDYR LN  TI D
Sbjct: 629 HVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISD 688

Query: 774 KFPIPVIEELFNELNGANMFSKIDIKARYHQIRMNQEDVEKTTFRTHEGHYEFLVMPFGL 833
            FP+P I+ L + +  A +F+ +D+ + YHQI M  +D  KT F T  G YE+ VMPFGL
Sbjct: 689 PFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGL 748

Query: 834 TNAPSTFQALMNSIFRPYMRRFVLVFFDDILVAAED----WKNTSSI 877
            NAPSTF   M   FR    RFV V+ DDIL+ +E     WK+  ++
Sbjct: 749 VNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTV 793

[Close]

BLAST of CSPI04G20550 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-34
Identity = 75/167 (44.91%), Postives = 104/167 (62.28%), Query Frame = 1


Query: 714 HLKQGTNPEMERLVDEMLASGIIWPSTSPYSSPVLLVRRKDGSWRFYVDYRALNNVTIPD 773
           H+ +    E+ ++V ++L +  I PS SP SSPV+LV +KDG++R  VDYR LN  TI D
Sbjct: 603 HVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISD 662

Query: 774 KFPIPVIEELFNELNGANMFSKIDIKARYHQIRMNQEDVEKTTFRTHEGHYEFLVMPFGL 833
            FP+P I+ L + +  A +F+ +D+ + YHQI M  +D  KT F T  G YE+ VMPFGL
Sbjct: 663 PFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGL 722

Query: 834 TNAPSTFQALMNSIFRPYMRRFVLVFFDDILVAAED----WKNTSSI 877
            NAPSTF   M   FR    RFV V+ DDIL+ +E     WK+  ++
Sbjct: 723 VNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTV 767

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BLAST of CSPI04G20550 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.8e-34
Identity = 71/160 (44.38%), Postives = 101/160 (63.12%), Query Frame = 1


Query: 722 EMERLVDEMLASGIIWPSTSPYSSPVLLVRRK-----DGSWRFYVDYRALNNVTIPDKFP 781
           E+ER +DE+L  GII PS SPY+SP+ +V +K     +  +R  VD++ LN VTIPD +P
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197

Query: 782 IPVIEELFNELNGANMFSKIDIKARYHQIRMNQEDVEKTTFRTHEGHYEFLVMPFGLTNA 841
           IP I      L  A  F+ +D+ + +HQI M + D+ KT F T  G YEFL +PFGL NA
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA 257

Query: 842 PSTFQALMNSIFRPYMRRFVLVFFDDILVAAED----WKN 873
           P+ FQ +++ I R ++ +   V+ DDI+V +ED    WKN
Sbjct: 258 PAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKN 297

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BLAST of CSPI04G20550 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.8e-34
Identity = 70/154 (45.45%), Postives = 97/154 (62.99%), Query Frame = 1


Query: 717 QGTNPEMERLVDEMLASGIIWPSTSPYSSPVLLVRRKDGS-----WRFYVDYRALNNVTI 776
           Q    E+E  + +ML  GII  S SPY+SP+ +V +K  +     +R  +DYR LN +T+
Sbjct: 217 QAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITV 276

Query: 777 PDKFPIPVIEELFNELNGANMFSKIDIKARYHQIRMNQEDVEKTTFRTHEGHYEFLVMPF 836
            D+ PIP ++E+  +L   N F+ ID+   +HQI M+ E V KT F T  GHYE+L MPF
Sbjct: 277 GDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPF 336

Query: 837 GLTNAPSTFQALMNSIFRPYMRRFVLVFFDDILV 866
           GL NAP+TFQ  MN I RP + +  LV+ DDI+V
Sbjct: 337 GLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIV 370

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BLAST of CSPI04G20550 vs. TrEMBL
Match: A0A087HSH3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G340100 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.3e-100
Identity = 235/631 (37.24%), Postives = 340/631 (53.88%), Query Frame = 1


Query: 340 KKFEIPVFNGTDPDSWLFRADRFFKIHSFTDSEKLSVAIISFDGPAIDWYRFQDECEAFK 399
           ++ EIP+F+G + +SW+ R +++F++ +F+D EKL    + F   A  WY+++ +   F+
Sbjct: 120 RRIEIPLFSGENAESWVQRIEQYFELGNFSDLEKLQAVRVCFLEDAWSWYQWERDRNPFR 179

Query: 400 DWDGLKEKMLTCFP------------TIR-DGSL------------------TIVLEETF 459
            W  L+ ++L  F             T+R DGS+                     LE  F
Sbjct: 180 SWAQLRYRLLDEFSASPNSSAGERLLTLRQDGSVKDYCHEFIALATNAPEIQETTLELAF 239

Query: 460 MNGLYPWLKTEVSLLEPKGLAAMMKLALKIE---------------------HRDGSQRG 519
           M GL P + T     EP+ L  MM +  +++                       + +QR 
Sbjct: 240 MMGLTPAICTRTKTFEPQTLKQMMVVEQRVDCWIEVDDSPPPRVTPPYRKLTADEIAQRK 299

Query: 520 WNDNIERGYAGGELKGRANKKIELRMLVVHDNGEELEIIEDDPYDEELEVKPM-EVGADE 579
             +   R    G +     KK E  +LVV  +G  LE+ +DDP   E EV    E+ A  
Sbjct: 300 AANQCYRCDEVGHMHHMCPKK-EFGVLVVQADGSYLELADDDPVGTEEEVPTQTELAA-- 359

Query: 580 NLNIELSINSVVGLNNSGTMKVKGKVKNEDVVVLIDCGATHNFISEKLVTALNLPLKTTT 639
                LS+NS+VG+++  TMK+KG +++  VVV+ID GA+HNF+S KL+++L LP+  + 
Sbjct: 360 -----LSLNSIVGISSPRTMKLKGLIQSTPVVVMIDSGASHNFVSTKLISSLGLPIDRSN 419

Query: 640 TYGVILGPGTTIKGKG---------------------------------WLKSLGVTEVD 699
            YGV+ G    ++G G                                 WL+SLG   V+
Sbjct: 420 RYGVMTGTRMIVEGIGTCIELELQIQDVVVKAGFLPLELGSADVILGMQWLESLGDMLVN 479

Query: 700 WRKLIMTFQHYWKRITIKGDPSLMKIRVSLKHMMKTWDNEDQSYLIGCRALHSSLTIEEM 759
           W+   M F    ++  ++GD  L    +S K + K   ++ Q  L+    L + L I + 
Sbjct: 480 WKLQRMKFILNSEKAGLQGDVGLCCSEISFKALWKAVTDKGQGVLVEYNGLQAELGIHK- 539

Query: 760 YDEETKPTAENLLPSLLTKFDDVFSWPETLPPQRGIEHHIHLKQGTNP------------ 819
            + E  P     L  +L  F  VF+ P+ LPP RG EH I L+    P            
Sbjct: 540 -EREQIP---EQLQDVLAGFAGVFAEPQGLPPSRGKEHGITLEPNARPVSVCPFRYPQAQ 599

Query: 820 --EMERLVDEMLASGIIWPSTSPYSSPVLLVRRKDGSWRFYVDYRALNNVTIPDKFPIPV 871
             E+E+ V  MLA+GII  S SP+SSPVLLV++KDGSWRF VDYRALN VTIPD FPIP+
Sbjct: 600 REEIEKQVASMLAAGIIQASGSPFSSPVLLVKKKDGSWRFCVDYRALNKVTIPDSFPIPM 659

[Close]

BLAST of CSPI04G20550 vs. TrEMBL
Match: J3SDF5_BETVU (Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.0e-92
Identity = 190/431 (44.08%), Postives = 258/431 (59.86%), Query Frame = 1


Query: 483 GRANKKIELRMLVVHDNGEELEIIEDDPYDEELEVKPMEVGADENLNIELSINSVVGLNN 542
           G   ++ EL +L + DN       E+D  +  L          E +  E+S+NSV+GL+N
Sbjct: 427 GHQCRRKELSVLFMEDN-------EEDELEGALSGSEAPPSPTEEIPPEVSLNSVIGLSN 486

Query: 543 SGTMKVKGKVKNEDVVVLIDCGATHNFISEKLVTALNLPLKTTTTYGVILGPGTTIKGKG 602
             TMK+ G + N +VVV+ID GATHNF+S K +  L +P+  +  +GV LG G  ++G G
Sbjct: 487 PKTMKLSGLIDNHEVVVMIDPGATHNFLSLKAIDKLGIPVTESEEFGVSLGDGQAVRGTG 546

Query: 603 ----------------------------------WLKSLGVTEVDWRKLIMTFQHYWKRI 662
                                             WL++LG    +W+   M+FQ      
Sbjct: 547 ICRAVALYLDGGLVVVEDFLPLGLGNSDVILGVQWLETLGTVVSNWKTQKMSFQLGGVPY 606

Query: 663 TIKGDPSLMKIRVSLKHMMKTWDNEDQSYLIGCRALHSSLTIEEMYDEETKPTAENLLPS 722
           T+ GDP+L + +VSLK M++T   E     + C  + +      + D + +      L  
Sbjct: 607 TLTGDPTLARSKVSLKAMLRTLRKEGGGLWLECNQVEAG-GAGSIRDSKVEQEIPPFLQE 666

Query: 723 LLTKFDDVFSWPETLPPQRGIEHHIHLKQGTNPEM--------------ERLVDEMLASG 782
           L+ +F+ VF  P  LPP+RG EH I LK+G+NP                ERL+ EMLA+G
Sbjct: 667 LMRRFEGVFETPVGLPPRRGHEHAIVLKEGSNPVGVRPYRYPQFQKDEIERLIKEMLAAG 726

Query: 783 IIWPSTSPYSSPVLLVRRKDGSWRFYVDYRALNNVTIPDKFPIPVIEELFNELNGANMFS 842
           II PSTSP+SSPV+LV++KDGSWRF VDYRALN  T+PDK+PIPVI+EL +EL+GA +FS
Sbjct: 727 IIQPSTSPFSSPVILVKKKDGSWRFCVDYRALNKETVPDKYPIPVIDELLDELHGATVFS 786

Query: 843 KIDIKARYHQIRMNQEDVEKTTFRTHEGHYEFLVMPFGLTNAPSTFQALMNSIFRPYMRR 866
           K+D++A YHQI +  ED  KT FRTHEGHYEFLVMPFGLTNAP+TFQ+LMN +FRP++RR
Sbjct: 787 KLDLRAGYHQILVRPEDTHKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNEVFRPFLRR 846

[Close]

BLAST of CSPI04G20550 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 6.1e-90
Identity = 189/431 (43.85%), Postives = 261/431 (60.56%), Query Frame = 1


Query: 488  KIELRMLVVHDNGEELEIIEDDPYDEELEVKPMEVGADENLNIELSINSVVGLNNSGTMK 547
            K ELR+L+VH++ EE    +D+ +D+    +P  +   +   +ELS+NSVVGL   GTMK
Sbjct: 1007 KKELRVLLVHEDEEE----DDNQFDDRATEEPALIELKDA--VELSLNSVVGLTTPGTMK 1066

Query: 548  VKGKVKNEDVVVLIDCGATHNFISEKLVTALNLPLKTTTTYGVILGPGTTIKGKG----- 607
            +KG + +++V++L+D GATHNF+S +LV  L LPL TTT+YGV++G G ++KGKG     
Sbjct: 1067 IKGTIGSKEVIILVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGTGISVKGKGICRGV 1126

Query: 608  ----------------------------WLKSLGVTEVDWRKLIMTFQHYWKRITIKGDP 667
                                        WL +LG  +V+W+ L M  +     + +KGDP
Sbjct: 1127 CISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVMVLKGDP 1186

Query: 668  SLMKIRVSLKHMMKTWDNEDQSYLIGCRALHSSLTIEEMYDEETKPTAENLLPSLLTKFD 727
            SL +   S                       ++  + E   E  K   E     +L +  
Sbjct: 1187 SLSRTETS-----------------------TTSDLSEGVQEVPKTVKE-----VLAQHQ 1246

Query: 728  DVFSWPETLPPQRGIEHHIHLKQGTNP--------------EMERLVDEMLASGIIWPST 787
             +F     LPP R I+H I L  G +P              E++RLV EML +GI+ PS 
Sbjct: 1247 QIFEPITGLPPSRDIDHAIQLILGASPVNVRPYRYPHILKNEIKRLVQEMLEAGIVRPSL 1306

Query: 788  SPYSSPVLLVRRKDGSWRFYVDYRALNNVTIPDKFPIPVIEELFNELNGANMFSKIDIKA 847
            SP+SSPVLLV++KDG WRF +DYRALN VT+PD+FPIPVI+EL ++L+GA +FSK+D+K+
Sbjct: 1307 SPFSSPVLLVKKKDGGWRFCIDYRALNKVTVPDRFPIPVIDELLDKLHGATIFSKLDLKS 1366

Query: 848  RYHQIRMNQEDVEKTTFRTHEGHYEFLVMPFGLTNAPSTFQALMNSIFRPYMRRFVLVFF 872
             YHQIR+ Q+D+ KT FRTHEGHYEFLVMPFGLTNAP+TFQ+LMN IF P++ +FVLVFF
Sbjct: 1367 GYHQIRVRQQDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNRIFWPHLWKFVLVFF 1403

[Close]

BLAST of CSPI04G20550 vs. TrEMBL
Match: A0A087G289_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48021U000700 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.1e-88
Identity = 187/423 (44.21%), Postives = 257/423 (60.76%), Query Frame = 1


Query: 490 ELRMLVVHDNGEELEIIEDDPYDEELEVKPMEVGADENLNIELSINSVVGLNNSGTMKVK 549
           E  +L+V D+G E+E  ED+  +E++E        D     ELS+NS+VG+++  T+K++
Sbjct: 273 EYAVLIVQDDGSEIEW-EDEGGEEKIEAI-----LDTAEVAELSLNSMVGISSPRTVKLR 332

Query: 550 GKVKNEDVVVLIDCGATHNFISEKLVTALNLPLKTTTTYGVILGPGTTIKGKG------- 609
           G +++E V+V+ID GA+HNF+SEK+V  L L    T  YGV+ G G T++G+G       
Sbjct: 333 GSIRDEPVIVMIDSGASHNFVSEKMVVKLGLTATETKGYGVVTGTGLTVQGRGVCKDVEL 392

Query: 610 --------------------------WLKSLGVTEVDWRKLIMTFQHYWKRITIKGDPSL 669
                                     WL SLG    +W+   + F    K + ++GDPS+
Sbjct: 393 HLQGLVVVAPFLPLELGSADVILGIQWLGSLGDMRCNWKLQKIAFMVEGKEVELQGDPSI 452

Query: 670 MKIRVSLKHMMKTWDNEDQSYLIGCRALHSSLTIEEMYDEETKPTAENLLPSLLTKFDDV 729
               V+LK + K  D E Q  ++     +  L  +    E+  P A   L ++L +F  V
Sbjct: 453 CCSPVTLKGLWKALDQEGQGVIVE----YGGLQAQNPRSEKPVPEA---LSTVLAEFTGV 512

Query: 730 FSWPETLPPQRGIEHHIHLKQGTNP--------------EMERLVDEMLASGIIWPSTSP 789
           F  P  LPP RG EH I LKQ  +P              E+ER V  MLA+GI   S SP
Sbjct: 513 FEEPRGLPPSRGKEHEITLKQEASPVCVRPFRYPQAQREELERQVATMLAAGITKESNSP 572

Query: 790 YSSPVLLVRRKDGSWRFYVDYRALNNVTIPDKFPIPVIEELFNELNGANMFSKIDIKARY 849
           +SSPVLLV++KDGSWRF VDYRALN VT+ D +PIP+I++L +EL+G+ +FSK+D++A Y
Sbjct: 573 FSSPVLLVKKKDGSWRFCVDYRALNKVTVGDSYPIPMIDQLLDELHGSVIFSKLDLRAGY 632

Query: 850 HQIRMNQEDVEKTTFRTHEGHYEFLVMPFGLTNAPSTFQALMNSIFRPYMRRFVLVFFDD 866
           HQIR+  EDV KT FRTH+GHYEFLVMPFGLTNAP TFQ+LMN +FR ++RRFVLVFFDD
Sbjct: 633 HQIRVKAEDVPKTAFRTHDGHYEFLVMPFGLTNAPGTFQSLMNEVFRKFLRRFVLVFFDD 682

[Close]

BLAST of CSPI04G20550 vs. TrEMBL
Match: A0A087G291_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48021U000700 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.1e-88
Identity = 187/423 (44.21%), Postives = 257/423 (60.76%), Query Frame = 1


Query: 490 ELRMLVVHDNGEELEIIEDDPYDEELEVKPMEVGADENLNIELSINSVVGLNNSGTMKVK 549
           E  +L+V D+G E+E  ED+  +E++E        D     ELS+NS+VG+++  T+K++
Sbjct: 355 EYAVLIVQDDGSEIEW-EDEGGEEKIEAI-----LDTAEVAELSLNSMVGISSPRTVKLR 414

Query: 550 GKVKNEDVVVLIDCGATHNFISEKLVTALNLPLKTTTTYGVILGPGTTIKGKG------- 609
           G +++E V+V+ID GA+HNF+SEK+V  L L    T  YGV+ G G T++G+G       
Sbjct: 415 GSIRDEPVIVMIDSGASHNFVSEKMVVKLGLTATETKGYGVVTGTGLTVQGRGVCKDVEL 474

Query: 610 --------------------------WLKSLGVTEVDWRKLIMTFQHYWKRITIKGDPSL 669
                                     WL SLG    +W+   + F    K + ++GDPS+
Sbjct: 475 HLQGLVVVAPFLPLELGSADVILGIQWLGSLGDMRCNWKLQKIAFMVEGKEVELQGDPSI 534

Query: 670 MKIRVSLKHMMKTWDNEDQSYLIGCRALHSSLTIEEMYDEETKPTAENLLPSLLTKFDDV 729
               V+LK + K  D E Q  ++     +  L  +    E+  P A   L ++L +F  V
Sbjct: 535 CCSPVTLKGLWKALDQEGQGVIVE----YGGLQAQNPRSEKPVPEA---LSTVLAEFTGV 594

Query: 730 FSWPETLPPQRGIEHHIHLKQGTNP--------------EMERLVDEMLASGIIWPSTSP 789
           F  P  LPP RG EH I LKQ  +P              E+ER V  MLA+GI   S SP
Sbjct: 595 FEEPRGLPPSRGKEHEITLKQEASPVCVRPFRYPQAQREELERQVATMLAAGITKESNSP 654

Query: 790 YSSPVLLVRRKDGSWRFYVDYRALNNVTIPDKFPIPVIEELFNELNGANMFSKIDIKARY 849
           +SSPVLLV++KDGSWRF VDYRALN VT+ D +PIP+I++L +EL+G+ +FSK+D++A Y
Sbjct: 655 FSSPVLLVKKKDGSWRFCVDYRALNKVTVGDSYPIPMIDQLLDELHGSVIFSKLDLRAGY 714

Query: 850 HQIRMNQEDVEKTTFRTHEGHYEFLVMPFGLTNAPSTFQALMNSIFRPYMRRFVLVFFDD 866
           HQIR+  EDV KT FRTH+GHYEFLVMPFGLTNAP TFQ+LMN +FR ++RRFVLVFFDD
Sbjct: 715 HQIRVKAEDVPKTAFRTHDGHYEFLVMPFGLTNAPGTFQSLMNEVFRKFLRRFVLVFFDD 764

[Close]

BLAST of CSPI04G20550 vs. TAIR10
Match: ATMG00850.1 (ATMG00850.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 6.3e-06
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1


Query: 713 IHLKQGTNPEMERLVDEMLASGIIWPSTSPYSSPVLLVRRKDGSW 758
           IH+ + T   ++  + EML + II PS SPYSSPVLLV++KDG W
Sbjct: 37  IHILRRTR--LKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

[Close]

BLAST of CSPI04G20550 vs. NCBI nr
Match: gi|674252310|gb|KFK45075.1| (hypothetical protein AALP_AA1G340100 [Arabis alpina])

HSP 1 Score: 375.9 bits (964), Expect = 1.9e-100
Identity = 235/631 (37.24%), Postives = 340/631 (53.88%), Query Frame = 1


Query: 340 KKFEIPVFNGTDPDSWLFRADRFFKIHSFTDSEKLSVAIISFDGPAIDWYRFQDECEAFK 399
           ++ EIP+F+G + +SW+ R +++F++ +F+D EKL    + F   A  WY+++ +   F+
Sbjct: 120 RRIEIPLFSGENAESWVQRIEQYFELGNFSDLEKLQAVRVCFLEDAWSWYQWERDRNPFR 179

Query: 400 DWDGLKEKMLTCFP------------TIR-DGSL------------------TIVLEETF 459
            W  L+ ++L  F             T+R DGS+                     LE  F
Sbjct: 180 SWAQLRYRLLDEFSASPNSSAGERLLTLRQDGSVKDYCHEFIALATNAPEIQETTLELAF 239

Query: 460 MNGLYPWLKTEVSLLEPKGLAAMMKLALKIE---------------------HRDGSQRG 519
           M GL P + T     EP+ L  MM +  +++                       + +QR 
Sbjct: 240 MMGLTPAICTRTKTFEPQTLKQMMVVEQRVDCWIEVDDSPPPRVTPPYRKLTADEIAQRK 299

Query: 520 WNDNIERGYAGGELKGRANKKIELRMLVVHDNGEELEIIEDDPYDEELEVKPM-EVGADE 579
             +   R    G +     KK E  +LVV  +G  LE+ +DDP   E EV    E+ A  
Sbjct: 300 AANQCYRCDEVGHMHHMCPKK-EFGVLVVQADGSYLELADDDPVGTEEEVPTQTELAA-- 359

Query: 580 NLNIELSINSVVGLNNSGTMKVKGKVKNEDVVVLIDCGATHNFISEKLVTALNLPLKTTT 639
                LS+NS+VG+++  TMK+KG +++  VVV+ID GA+HNF+S KL+++L LP+  + 
Sbjct: 360 -----LSLNSIVGISSPRTMKLKGLIQSTPVVVMIDSGASHNFVSTKLISSLGLPIDRSN 419

Query: 640 TYGVILGPGTTIKGKG---------------------------------WLKSLGVTEVD 699
            YGV+ G    ++G G                                 WL+SLG   V+
Sbjct: 420 RYGVMTGTRMIVEGIGTCIELELQIQDVVVKAGFLPLELGSADVILGMQWLESLGDMLVN 479

Query: 700 WRKLIMTFQHYWKRITIKGDPSLMKIRVSLKHMMKTWDNEDQSYLIGCRALHSSLTIEEM 759
           W+   M F    ++  ++GD  L    +S K + K   ++ Q  L+    L + L I + 
Sbjct: 480 WKLQRMKFILNSEKAGLQGDVGLCCSEISFKALWKAVTDKGQGVLVEYNGLQAELGIHK- 539

Query: 760 YDEETKPTAENLLPSLLTKFDDVFSWPETLPPQRGIEHHIHLKQGTNP------------ 819
            + E  P     L  +L  F  VF+ P+ LPP RG EH I L+    P            
Sbjct: 540 -EREQIP---EQLQDVLAGFAGVFAEPQGLPPSRGKEHGITLEPNARPVSVCPFRYPQAQ 599

Query: 820 --EMERLVDEMLASGIIWPSTSPYSSPVLLVRRKDGSWRFYVDYRALNNVTIPDKFPIPV 871
             E+E+ V  MLA+GII  S SP+SSPVLLV++KDGSWRF VDYRALN VTIPD FPIP+
Sbjct: 600 REEIEKQVASMLAAGIIQASGSPFSSPVLLVKKKDGSWRFCVDYRALNKVTIPDSFPIPM 659

[Close]

BLAST of CSPI04G20550 vs. NCBI nr
Match: gi|731338584|ref|XP_010680400.1| (PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 359.8 bits (922), Expect = 1.4e-95
Identity = 202/438 (46.12%), Postives = 270/438 (61.64%), Query Frame = 1


Query: 482 KGRANKKIELRMLVVHDNGEELEIIEDDPYDEELEVKPMEVGAD---ENLNIELSINSVV 541
           +G   +K E+ +LV+          E+DP  EE E +  +  AD   E   +ELS+NSVV
Sbjct: 374 QGHRCQKKEVSVLVMEG--------EEDPPPEEEEEEVNDASADVSAEVTTVELSLNSVV 433

Query: 542 GLNNSGTMKVKGKVKNEDVVVLIDCGATHNFISEKLVTALNLPLKTTTTYGVILGPGTTI 601
           GL +  TMK+ G +  ++VVV++D GATHNFIS + V  L +PL     +GV LG GT +
Sbjct: 434 GLTSPRTMKLTGVINGQEVVVMVDPGATHNFISLRAVEKLAIPLIGEANFGVSLGTGTMV 493

Query: 602 KGKGWLKS-------------------------LGV--------TEVDWRKLIMTFQHYW 661
           KGKG  +                          LGV           +W+  +M F+   
Sbjct: 494 KGKGECQGVMLEIQGLVIRENFLPLDLGNSDIILGVQWLEKLGSVTTNWKSQLMKFKIGR 553

Query: 662 KRITIKGDPSLMKIRVSLKHMMKTWDNEDQSYLIGCRALHSSLTIEEMYDEETKPTAENL 721
           + +T++GDPSL + R+SLK M++    E Q  L+    +         +D E +      
Sbjct: 554 EEVTLQGDPSLDRTRISLKAMLRALRIEGQGVLVEMNHIEREKEPPGKWDIEVE--VPRP 613

Query: 722 LPSLLTKFDDVFSWPETLPPQRGIEHHIHLKQGTNP--------------EMERLVDEML 781
           L  LL ++  VF+ P  LPP RG EH I LK+G+NP              E+ERLV +ML
Sbjct: 614 LQPLLNQYSQVFNMPSGLPPSRGREHSITLKEGSNPVSVRPYRYPHVQKGEIERLVKDML 673

Query: 782 ASGIIWPSTSPYSSPVLLVRRKDGSWRFYVDYRALNNVTIPDKFPIPVIEELFNELNGAN 841
           A+GII PSTSP+SSPVLLV++KDGSWRF VDYRALN  T+PDK+PIPVI+EL +EL G+ 
Sbjct: 674 AAGIIQPSTSPFSSPVLLVKKKDGSWRFCVDYRALNKETVPDKYPIPVIDELLDELYGSV 733

Query: 842 MFSKIDIKARYHQIRMNQEDVEKTTFRTHEGHYEFLVMPFGLTNAPSTFQALMNSIFRPY 870
           +FSK+D+K+ YHQIR+ +ED+ KT FRTHEGHYEFLVMPFGLTNAP+TFQ+LMN +FRP+
Sbjct: 734 VFSKLDLKSGYHQIRVRKEDIHKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNEVFRPF 793

[Close]

BLAST of CSPI04G20550 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 359.4 bits (921), Expect = 1.8e-95
Identity = 203/470 (43.19%), Postives = 282/470 (60.00%), Query Frame = 1


Query: 452 MKLALKIEHRDGSQRGWNDNIERGYAGGELKGRANKKIELRMLVVHDNGEELEIIEDDPY 511
           +K  L +E +    +G        Y+ G  + +   K EL + ++++     E +ED+  
Sbjct: 296 VKRLLDVEFKARLDKGLCFKCNERYSPGH-RCKMKDKRELMLFIMNEE----ESLEDEDR 355

Query: 512 DEELEVKPMEVGA---DENLNIELSINSVVGLNNSGTMKVKGKVKNEDVVVLIDCGATHN 571
            EE   + +E+     +E   IEL   ++ GL + GTMK+KG++K ++V++LID GATHN
Sbjct: 356 TEETNEEVLELNQLTLEEGTEIELK--AIHGLTSKGTMKIKGEIKGKEVLILIDSGATHN 415

Query: 572 FISEKLVTALNLPLKTTTTYGVILGPGTTIKGKG-------------------------- 631
           FI  K+V  + L L+  T +GV +G GT  +G+G                          
Sbjct: 416 FIHNKIVEEVGLELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSV 475

Query: 632 -------WLKSLGVTEVDWRKLIMTFQHYWKRITIKGDPSLMKIRVSLKHMMKTWDNEDQ 691
                  WL + G  ++ W  L MTF+   K+  +KGDPSL++   SLK + KTW+ +DQ
Sbjct: 476 DVILGMQWLNTTGTMKIHWPSLTMTFRMGKKQFILKGDPSLIRAECSLKTIEKTWEEDDQ 535

Query: 692 SYLIGCRALHSSLT--IEEMY----DEETKPTAENLLPSLLTKFDDVFSWPETLPPQRGI 751
            +L+  +   +     ++E+     DEE  P    ++  LL ++ D+F  P+ LPP+R  
Sbjct: 536 GFLLEMQNYEAEEDGELDEVQRVKGDEEESP----MIQVLLQQYTDLFEEPKGLPPKREC 595

Query: 752 EHHIHLKQGTNP--------------EMERLVDEMLASGIIWPSTSPYSSPVLLVRRKDG 811
           +H I L  G  P              E+E+L+ EML  GII PS SPYSSPVLLVR+KDG
Sbjct: 596 DHRILLVTGQKPINVRPYKYGHTQKEEIEKLISEMLQVGIIRPSHSPYSSPVLLVRKKDG 655

Query: 812 SWRFYVDYRALNNVTIPDKFPIPVIEELFNELNGANMFSKIDIKARYHQIRMNQEDVEKT 866
            WRF VDYR LN VTI DKFPIPVIEEL +EL+GA +FSK+D+K+ YHQIRM +EDVEKT
Sbjct: 656 GWRFCVDYRKLNQVTISDKFPIPVIEELLDELHGATVFSKLDLKSGYHQIRMKEEDVEKT 715

[Close]

BLAST of CSPI04G20550 vs. NCBI nr
Match: gi|729344250|ref|XP_010541181.1| (PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana])

HSP 1 Score: 358.2 bits (918), Expect = 4.0e-95
Identity = 197/433 (45.50%), Postives = 270/433 (62.36%), Query Frame = 1


Query: 483  GRANKKIELRMLV---VHDNGEELEIIEDDPYDEELEVKPMEVGADENLNIELSINSVVG 542
            G   K+ EL++++   + + GEELE  +D+               DE    ELS+NSVVG
Sbjct: 593  GHRCKQKELQVILAEEITETGEELEEEQDNEAGNR---------EDEGEFAELSLNSVVG 652

Query: 543  LNNSGTMKVKGKVKNEDVVVLIDCGATHNFISEKLVTALNLPLKTTTTYGVILGPGTTIK 602
            L +  T+K++G ++ ++VVVLID GATHNFIS KL+  L L  +  T +GV LG G  +K
Sbjct: 653  LTSPKTLKIRGSIEGQEVVVLIDSGATHNFISLKLMKKLKLRPEGNTQFGVSLGTGMKVK 712

Query: 603  GKG---------------------------------WLKSLGVTEVDWRKLIMTFQHYWK 662
            GKG                                 WL+ LG  ++D++ L + F     
Sbjct: 713  GKGICKAVHLQLQQIEVVEDFLPLELGSADLILGVQWLQKLGKVQMDFQDLELKFNQGTS 772

Query: 663  RITIKGDPSLMKIRVSLKHMMKTWDNEDQSYLIGCRALHSSLTIEEMYDEETKPTAENLL 722
             +T+ GDP+L    V+L+ ++K+  + DQSYL+    L   + ++    E+        L
Sbjct: 773  WVTVTGDPTLHSSLVTLRSLIKSVCDGDQSYLVKLETLEEQVGVDSNLPEK--------L 832

Query: 723  PSLLTKFDDVFSWPETLPPQRGIEHHIHLKQGTNP--------------EMERLVDEMLA 782
             ++L +F  VF  P  LPP+RG EH I+LK+GT P              E+E+LV +ML 
Sbjct: 833  QAVLEEFGPVFEIPTELPPERGREHPINLKEGTGPVSVRPYRYPHAHKEEIEKLVKDMLK 892

Query: 783  SGIIWPSTSPYSSPVLLVRRKDGSWRFYVDYRALNNVTIPDKFPIPVIEELFNELNGANM 842
            +GI+ PS SP+SSPVLLV++KDGSWRF +DYRALN VT+ DKFPIP+I++L +EL+GA +
Sbjct: 893  AGIVRPSQSPFSSPVLLVKKKDGSWRFCIDYRALNKVTVLDKFPIPMIDQLLDELHGARV 952

Query: 843  FSKIDIKARYHQIRMNQEDVEKTTFRTHEGHYEFLVMPFGLTNAPSTFQALMNSIFRPYM 866
            FSK+D+++ YHQIRM  ED+ KT FRTH+GHYEFLVMPFGLTNAP+TFQALMN IFRPY+
Sbjct: 953  FSKLDLRSGYHQIRMKTEDIPKTAFRTHDGHYEFLVMPFGLTNAPATFQALMNEIFRPYL 1008

[Close]

BLAST of CSPI04G20550 vs. NCBI nr
Match: gi|922423376|ref|XP_013617706.1| (PREDICTED: uncharacterized protein LOC106324252 [Brassica oleracea var. oleracea])

HSP 1 Score: 350.5 bits (898), Expect = 8.4e-93
Identity = 194/427 (45.43%), Postives = 264/427 (61.83%), Query Frame = 1


Query: 488 KIELRMLVVHDNGEELEIIEDDPYDEELEVKPMEVGADENLNIELSINSVVGLNNSGTMK 547
           + E+ +++V ++G E+E+ E+   D E +   M+         ELS+NSVVGL++  TMK
Sbjct: 404 RAEMLVVMVMEDGTEIEMAEEQWGDGEDDPTKMQAEV-----AELSLNSVVGLSSPKTMK 463

Query: 548 VKGKVKNEDVVVLIDCGATHNFISEKLVTALNLPLKTTTTYGVILGPGTTIKGKG----- 607
           V+G +  E VV+LID GA+HNFISEK+VT LNL  +   +YGV++  G T++G+G     
Sbjct: 464 VRGTIHGEAVVILIDNGASHNFISEKIVTKLNLQKRAVASYGVMVAGGATLEGQGVIIGL 523

Query: 608 ----------------------------WLKSLGVTEVDWRKLIMTFQHYWKRITIKGDP 667
                                       WL +LG   V+W+   M +    + I ++GDP
Sbjct: 524 ELRLPGYVVVTDFLPLELGIADVILGVQWLDTLGDVNVNWKLQCMRYHDGEEEIILQGDP 583

Query: 668 SLMKIRVSLKHMMKTWDNEDQSYLIGCRALHSS--LTIEEMYDEETKPTAENLLPSLLTK 727
           SL    VSLK M KT   E +  L+    L +S  + +   + EE K         +L +
Sbjct: 584 SLHSASVSLKSMWKTLQKEGEGVLLEFGGLRASEDVVLPVAWPEELK--------EVLEQ 643

Query: 728 FDDVFSWPETLPPQRGIEHHIHLKQGTNP--------------EMERLVDEMLASGIIWP 787
           +  VFS P  LPP RG EH I L+ G  P              E+E+ +  MLA+GII  
Sbjct: 644 YTQVFSEPRGLPPSRGREHTIILENGAKPVSIRPFRYPHAQKEEIEQQIASMLAAGIIQE 703

Query: 788 STSPYSSPVLLVRRKDGSWRFYVDYRALNNVTIPDKFPIPVIEELFNELNGANMFSKIDI 847
           ++SP+SSPVLLVR+KDGSWRF VDYRALN  T+ DK+PIP+I++L +EL+GA +FSKID+
Sbjct: 704 TSSPFSSPVLLVRKKDGSWRFCVDYRALNKYTVADKYPIPMIDQLLDELHGATIFSKIDL 763

Query: 848 KARYHQIRMNQEDVEKTTFRTHEGHYEFLVMPFGLTNAPSTFQALMNSIFRPYMRRFVLV 866
           ++ YHQIR+  EDV KT FRTH+GHYEFLVMPFGL+NAP+TFQALMN IFRPY+R+FVLV
Sbjct: 764 RSGYHQIRVRAEDVPKTAFRTHDGHYEFLVMPFGLSNAPATFQALMNDIFRPYLRKFVLV 817

The following BLAST results are available for this feature:

BLAST of CSPI04G20550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POL2_DROME	1.0e-34	45.51	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
YI31B_YEAST	1.4e-34	44.91	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YG31B_YEAST	1.4e-34	44.91	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
POL5_DROME	6.8e-34	44.38	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
POL3_DROME	8.8e-34	45.45	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of CSPI04G20550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A087HSH3_ARAAL	1.3e-100	37.24	Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G340100 PE=4 SV=1	[more]
J3SDF5_BETVU	1.0e-92	44.08	Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1	[more]
A5B2I6_VITVI	6.1e-90	43.85	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1	[more]
A0A087G289_ARAAL	1.1e-88	44.21	Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48021U000700 PE=4 SV=1	[more]
A0A087G291_ARAAL	1.1e-88	44.21	Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48021U000700 PE=4 SV=1	[more]

BLAST of CSPI04G20550 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00850.1	6.3e-06	53.33	ATMG00850.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CSPI04G20550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|674252310\|gb\|KFK45075.1\|	1.9e-100	37.24	hypothetical protein AALP_AA1G340100 [Arabis alpina]	[more]
gi\|731338584\|ref\|XP_010680400.1\|	1.4e-95	46.12	PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Beta vulgaris subsp. vulgari...	[more]
gi\|778697580\|ref\|XP_011654353.1\|	1.8e-95	43.19	PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus]	[more]
gi\|729344250\|ref\|XP_010541181.1\|	4.0e-95	45.50	PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana]	[more]
gi\|922423376\|ref\|XP_013617706.1\|	8.4e-93	45.43	PREDICTED: uncharacterized protein LOC106324252 [Brassica oleracea var. oleracea...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G20550.1	CSPI04G20550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 752..869 score: 2.3
IPR000477	Reverse transcriptase domain	PROFILE	PS50878	RT_POL	coord: 731..876 score: 1
None	No IPR available	unknown	Coil	Coil	coord: 316..336 scor
None	No IPR available	GENE3D	G3DSA:3.10.10.10		coord: 713..844 score: 2.0
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 743..870 score: 2.0
None	No IPR available	PANTHER	PTHR24559:SF202	SUBFAMILY NOT NAMED	coord: 743..870 score: 2.0
None	No IPR available	PFAM	PF13975	gag-asp_proteas	coord: 548..618 score: 1.
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 689..872 score: 3.22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G20550	CsaV3_4G030990	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G20550	Cla97C04G069640	Watermelon (97103) v2	cpiwmbB314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G20550	Melon (DHL92) v3.6.1	cpimedB324
CSPI04G20550	Cucumber (Gy14) v2	cgybcpiB169
CSPI04G20550	Silver-seed gourd	carcpiB0315
CSPI04G20550	Silver-seed gourd	carcpiB0894
CSPI04G20550	Watermelon (97103) v2	cpiwmbB308
CSPI04G20550	Wax gourd	cpiwgoB396
CSPI04G20550	Wax gourd	cpiwgoB400
CSPI04G20550	Cucumber (Gy14) v1	cgycpiB529
CSPI04G20550	Cucurbita maxima (Rimu)	cmacpiB679
CSPI04G20550	Cucurbita maxima (Rimu)	cmacpiB878
CSPI04G20550	Cucurbita moschata (Rifu)	cmocpiB670
CSPI04G20550	Cucurbita moschata (Rifu)	cmocpiB858
CSPI04G20550	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G20550	Cucumber (Chinese Long) v2	cpicuB187
CSPI04G20550	Melon (DHL92) v3.5.1	cpimeB333
CSPI04G20550	Watermelon (Charleston Gray)	cpiwcgB319
CSPI04G20550	Watermelon (97103) v1	cpiwmB349
CSPI04G20550	Cucurbita pepo (Zucchini)	cpecpiB066
CSPI04G20550	Cucurbita pepo (Zucchini)	cpecpiB500
CSPI04G20550	Bottle gourd (USVL1VR-Ls)	cpilsiB258