CSPI04G20520 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G20520
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 18720684 .. 18720926 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCAAAAACCGTCACAAACGCCGCTGCACCAGATGAGTGGGCGTGCAATGCGTGGGTCTTGGTATTTGGTTGGTGTTGCGTTGTCCCTGGAAAAGGAAACGCCGTGGGCGAGCGCCGGAAGGAAACGCTACCGGCCGAATCGTAGGTCTCAACGGAGAAACTCGCCGGTGTGGCCGTCGCGAGGAGAGGATGAGTGGCAGGAAGAGTCCGTCGGAGGACAGAAAATGGCGCTCGCTTAG

mRNA sequence

ATGCGTCAAAAACCGTCACAAACGCCGCTGCACCAGATGAGTGGGCGTGCAATGCGTGGGTCTTGGTATTTGGTTGGTGTTGCGTTGTCCCTGGAAAAGGAAACGCCGTGGGCGAGCGCCGGAAGGAAACGCTACCGGCCGAATCGTAGGTCTCAACGGAGAAACTCGCCGGTGTGGCCGTCGCGAGGAGAGGATGAGTGGCAGGAAGAGTCCGTCGGAGGACAGAAAATGGCGCTCGCTTAG

Coding sequence (CDS)

ATGCGTCAAAAACCGTCACAAACGCCGCTGCACCAGATGAGTGGGCGTGCAATGCGTGGGTCTTGGTATTTGGTTGGTGTTGCGTTGTCCCTGGAAAAGGAAACGCCGTGGGCGAGCGCCGGAAGGAAACGCTACCGGCCGAATCGTAGGTCTCAACGGAGAAACTCGCCGGTGTGGCCGTCGCGAGGAGAGGATGAGTGGCAGGAAGAGTCCGTCGGAGGACAGAAAATGGCGCTCGCTTAG

Homology

[Close]

BLAST of CSPI04G20520 vs. TrEMBL
Match: A0A0A0KYR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G526550 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.5e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MRQKPSQTPLHQMSGRAMRGSWYLVGVALSLEKETPWASAGRKRYRPNRRSQRRNSPVWP 60
          MRQKPSQTPLHQMSGRAMRGSWYLVGVALSLEKETPWASAGRKRYRPNRRSQRRNSPVWP
Sbjct: 1  MRQKPSQTPLHQMSGRAMRGSWYLVGVALSLEKETPWASAGRKRYRPNRRSQRRNSPVWP 60

Query: 61 SRGEDEWQEESVGGQKMALA 81
          SRGEDEWQEESVGGQKMALA
Sbjct: 61 SRGEDEWQEESVGGQKMALA 80

[Close]

BLAST of CSPI04G20520 vs. NCBI nr
Match: gi|700199677|gb|KGN54835.1| (hypothetical protein Csa_4G526550 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 9.3e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MRQKPSQTPLHQMSGRAMRGSWYLVGVALSLEKETPWASAGRKRYRPNRRSQRRNSPVWP 60
          MRQKPSQTPLHQMSGRAMRGSWYLVGVALSLEKETPWASAGRKRYRPNRRSQRRNSPVWP
Sbjct: 1  MRQKPSQTPLHQMSGRAMRGSWYLVGVALSLEKETPWASAGRKRYRPNRRSQRRNSPVWP 60

Query: 61 SRGEDEWQEESVGGQKMALA 81
          SRGEDEWQEESVGGQKMALA
Sbjct: 61 SRGEDEWQEESVGGQKMALA 80

The following BLAST results are available for this feature:

BLAST of CSPI04G20520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G20520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYR8_CUCSA	6.5e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G526550 PE=4 SV=1	[more]

BLAST of CSPI04G20520 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G20520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199677\|gb\|KGN54835.1\|	9.3e-39	100.00	hypothetical protein Csa_4G526550 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G20520.1	CSPI04G20520.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G20520	CsaV3_4G030960	Cucumber (Chinese Long) v3	cpicucB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G20520	Melon (DHL92) v3.6.1	cpimedB324
CSPI04G20520	Cucumber (Gy14) v2	cgybcpiB169
CSPI04G20520	Silver-seed gourd	carcpiB0315
CSPI04G20520	Watermelon (97103) v2	cpiwmbB308
CSPI04G20520	Watermelon (97103) v2	cpiwmbB314
CSPI04G20520	Wax gourd	cpiwgoB396
CSPI04G20520	Cucumber (Gy14) v1	cgycpiB529
CSPI04G20520	Cucurbita maxima (Rimu)	cmacpiB878
CSPI04G20520	Cucurbita moschata (Rifu)	cmocpiB670
CSPI04G20520	Cucurbita moschata (Rifu)	cmocpiB858
CSPI04G20520	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G20520	Cucumber (Chinese Long) v2	cpicuB187
CSPI04G20520	Melon (DHL92) v3.5.1	cpimeB333
CSPI04G20520	Watermelon (Charleston Gray)	cpiwcgB319
CSPI04G20520	Watermelon (97103) v1	cpiwmB349
CSPI04G20520	Cucurbita pepo (Zucchini)	cpecpiB500
CSPI04G20520	Bottle gourd (USVL1VR-Ls)	cpilsiB258