CSPI04G19790 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G19790
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionSNF1-related protein kinase 2.5
LocationChr4 : 17564972 .. 17565154 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAACATTCCAACCTTCTCTCATCAAAGTGTTGAAGAAATCATGAAGGTCGTGGGGGAGGCAAAGAAGAAACTGCCCTCATCATCGACAACCATCGTGGACTACAACTCAGAAACTGAAACGGAAGAAGAGACCAATACGGAAGAAAATGAGGAAGATGAAGAAGCTAAGTCTGAATGA

mRNA sequence

ATGAGGAACATTCCAACCTTCTCTCATCAAAGTGTTGAAGAAATCATGAAGGTCGTGGGGGAGGCAAAGAAGAAACTGCCCTCATCATCGACAACCATCGTGGACTACAACTCAGAAACTGAAACGGAAGAAGAGACCAATACGGAAGAAAATGAGGAAGATGAAGAAGCTAAGTCTGAATGA

Coding sequence (CDS)

ATGAGGAACATTCCAACCTTCTCTCATCAAAGTGTTGAAGAAATCATGAAGGTCGTGGGGGAGGCAAAGAAGAAACTGCCCTCATCATCGACAACCATCGTGGACTACAACTCAGAAACTGAAACGGAAGAAGAGACCAATACGGAAGAAAATGAGGAAGATGAAGAAGCTAAGTCTGAATGA
Homology
[Close]
BLAST of CSPI04G19790 vs. NCBI nr
Match: gi|778697758|ref|XP_011654392.1| (PREDICTED: serine/threonine-protein kinase SAPK7-like [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-19
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 1   MRNIPTFSHQSVEEIMKVVGEAKKKLPSSSTTIVDYNSETETEEETNTEENEEDEEAKSE 60
           MRNIPTFSHQSVEEIMKVVGEAKKKLPSSSTTIVDYNSETE EEETNTEENEEDEEA SE
Sbjct: 398 MRNIPTFSHQSVEEIMKVVGEAKKKLPSSSTTIVDYNSETEKEEETNTEENEEDEEAMSE 457

[Close]
BLAST of CSPI04G19790 vs. NCBI nr
Match: gi|659082864|ref|XP_008442071.1| (PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase SRK2J-like [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-07
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 1 

Query: 2   RNIPTFSHQSVEEIMKVVGEAKKKLPSSSTTIVDYNSETETEEE---TNTEENEEDEEAK 61
           RNI TFSHQS EEIMKV+ EA+KKLPS STTIV Y S+TE E+       EENEEDEE +
Sbjct: 395 RNIRTFSHQSDEEIMKVLREAEKKLPSXSTTIVGYKSKTEEEKXRPINYMEENEEDEEDE 454

The following BLAST results are available for this feature:
BLAST of CSPI04G19790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G19790 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI04G19790 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G19790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778697758|ref|XP_011654392.1|3.6e-1996.67PREDICTED: serine/threonine-protein kinase SAPK7-like [Cucumis sativus][more]
gi|659082864|ref|XP_008442071.1|5.4e-0767.74PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase SRK2J-like [Cucu... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G19790.1CSPI04G19790.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G19790Lsi01G020520Bottle gourd (USVL1VR-Ls)cpilsiB249
CSPI04G19790CsGy4G018650Cucumber (Gy14) v2cgybcpiB170
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G19790Cucurbita maxima (Rimu)cmacpiB673
CSPI04G19790Cucumber (Chinese Long) v2cpicuB181
CSPI04G19790Melon (DHL92) v3.5.1cpimeB324
CSPI04G19790Melon (DHL92) v3.5.1cpimeB334
CSPI04G19790Watermelon (Charleston Gray)cpiwcgB309
CSPI04G19790Watermelon (Charleston Gray)cpiwcgB322
CSPI04G19790Watermelon (97103) v1cpiwmB348
CSPI04G19790Cucurbita pepo (Zucchini)cpecpiB067
CSPI04G19790Bottle gourd (USVL1VR-Ls)cpilsiB250
CSPI04G19790Cucumber (Gy14) v2cgybcpiB176
CSPI04G19790Silver-seed gourdcarcpiB0552
CSPI04G19790Cucumber (Chinese Long) v3cpicucB212
CSPI04G19790Cucumber (Chinese Long) v3cpicucB214
CSPI04G19790Cucumber (Chinese Long) v3cpicucB222
CSPI04G19790Watermelon (97103) v2cpiwmbB300
CSPI04G19790Watermelon (97103) v2cpiwmbB312
CSPI04G19790Wax gourdcpiwgoB396
CSPI04G19790Wax gourdcpiwgoB403