CSPI04G19560 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G19560
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 17334911 .. 17335300 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCAGAAGCTTCCTCTTCTTCAAAAGCTATGGAAACTAGGCTGACCAATGTCGAAAAAACTGTTGGTGAAATTCAAGGGGAATTAGGAGAAATCCATTCAATGTTAGGGGAGATTTTGCAGAACCTAACCATAACTTTTGAAACCCACAAAGAACCTGCCAAATTAGCCCTCATTCAAAGAAAACAAATACTAGAGAAGCAAGATTCTGGAGATGACATGGCTGCCAACATCAATTTTCCTCTAAATGAAGGCACAGACTTTGCAAGAAACCTAGGAAAAACCAAGATCACCCGAAATCCTTATCCAGAATTCCAAATGAAAAAAGAACACAATCCAAGAAACTTATATCAAGCAAGATTCAAACCTGAAGATCACCACAAGTAA

mRNA sequence

ATGGATGCAGAAGCTTCCTCTTCTTCAAAAGCTATGGAAACTAGGCTGACCAATGTCGAAAAAACTGTTGGTGAAATTCAAGGGGAATTAGGAGAAATCCATTCAATGTTAGGGGAGATTTTGCAGAACCTAACCATAACTTTTGAAACCCACAAAGAACCTGCCAAATTAGCCCTCATTCAAAGAAAACAAATACTAGAGAAGCAAGATTCTGGAGATGACATGGCTGCCAACATCAATTTTCCTCTAAATGAAGGCACAGACTTTGCAAGAAACCTAGGAAAAACCAAGATCACCCGAAATCCTTATCCAGAATTCCAAATGAAAAAAGAACACAATCCAAGAAACTTATATCAAGCAAGATTCAAACCTGAAGATCACCACAAGTAA

Coding sequence (CDS)

ATGGATGCAGAAGCTTCCTCTTCTTCAAAAGCTATGGAAACTAGGCTGACCAATGTCGAAAAAACTGTTGGTGAAATTCAAGGGGAATTAGGAGAAATCCATTCAATGTTAGGGGAGATTTTGCAGAACCTAACCATAACTTTTGAAACCCACAAAGAACCTGCCAAATTAGCCCTCATTCAAAGAAAACAAATACTAGAGAAGCAAGATTCTGGAGATGACATGGCTGCCAACATCAATTTTCCTCTAAATGAAGGCACAGACTTTGCAAGAAACCTAGGAAAAACCAAGATCACCCGAAATCCTTATCCAGAATTCCAAATGAAAAAAGAACACAATCCAAGAAACTTATATCAAGCAAGATTCAAACCTGAAGATCACCACAAGTAA

Homology

[Close]

BLAST of CSPI04G19560 vs. TrEMBL
Match: A0A0A0L2A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G441080 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-64
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MDAEASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALI 60
           MDAEASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALI
Sbjct: 1   MDAEASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALI 60

Query: 61  QRKQILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQA 120
           QRKQILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQA
Sbjct: 61  QRKQILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQA 120

Query: 121 RFKPEDHHK 130
           RFKPED+HK
Sbjct: 121 RFKPEDYHK 129

[Close]

BLAST of CSPI04G19560 vs. TrEMBL
Match: A0A0A0KQP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G494380 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 12  METRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALIQRKQILEKQDS 71
           METRLTNVEK+VGEIQGEL EI SM  EILQNL I  ET++E A+LA  ++ QI E+QD 
Sbjct: 1   METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60

Query: 72  GDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMK 110
           GDD A N N  LNE  + ARN  K KI + PY + +MK
Sbjct: 61  GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMK 98

[Close]

BLAST of CSPI04G19560 vs. NCBI nr
Match: gi|700199584|gb|KGN54742.1| (hypothetical protein Csa_4G441080 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 2.1e-64
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MDAEASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALI 60
           MDAEASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALI
Sbjct: 1   MDAEASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALI 60

Query: 61  QRKQILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQA 120
           QRKQILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQA
Sbjct: 61  QRKQILEKQDSGDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMKKEHNPRNLYQA 120

Query: 121 RFKPEDHHK 130
           RFKPED+HK
Sbjct: 121 RFKPEDYHK 129

[Close]

BLAST of CSPI04G19560 vs. NCBI nr
Match: gi|700196042|gb|KGN51219.1| (hypothetical protein Csa_5G494380 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 12  METRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALIQRKQILEKQDS 71
           METRLTNVEK+VGEIQGEL EI SM  EILQNL I  ET++E A+LA  ++ QI E+QD 
Sbjct: 1   METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60

Query: 72  GDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMK 110
           GDD A N N  LNE  + ARN  K KI + PY + +MK
Sbjct: 61  GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMK 98

The following BLAST results are available for this feature:

BLAST of CSPI04G19560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G19560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2A5_CUCSA	1.4e-64	99.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G441080 PE=4 SV=1	[more]
A0A0A0KQP4_CUCSA	1.7e-20	60.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G494380 PE=4 SV=1	[more]

BLAST of CSPI04G19560 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G19560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199584\|gb\|KGN54742.1\|	2.1e-64	99.22	hypothetical protein Csa_4G441080 [Cucumis sativus]	[more]
gi\|700196042\|gb\|KGN51219.1\|	2.4e-20	60.20	hypothetical protein Csa_5G494380 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G19560.1	CSPI04G19560.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G19560	Csa4G441080	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G19560	CsaV3_4G029920	Cucumber (Chinese Long) v3	cpicucB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G19560	Cucurbita maxima (Rimu)	cmacpiB673
CSPI04G19560	Cucurbita maxima (Rimu)	cmacpiB886
CSPI04G19560	Cucurbita moschata (Rifu)	cmocpiB673
CSPI04G19560	Cucurbita moschata (Rifu)	cmocpiB867
CSPI04G19560	Melon (DHL92) v3.5.1	cpimeB325
CSPI04G19560	Watermelon (Charleston Gray)	cpiwcgB322
CSPI04G19560	Cucurbita pepo (Zucchini)	cpecpiB067
CSPI04G19560	Cucurbita pepo (Zucchini)	cpecpiB492
CSPI04G19560	Bottle gourd (USVL1VR-Ls)	cpilsiB249
CSPI04G19560	Melon (DHL92) v3.6.1	cpimedB316
CSPI04G19560	Cucumber (Gy14) v2	cgybcpiB170
CSPI04G19560	Silver-seed gourd	carcpiB0513
CSPI04G19560	Silver-seed gourd	carcpiB0552
CSPI04G19560	Watermelon (97103) v2	cpiwmbB312
CSPI04G19560	Wax gourd	cpiwgoB403
CSPI04G19560	Cucumber (Gy14) v1	cgycpiB267