CSPI04G19430 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G19430
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCACTA en-spm transposon protein
LocationChr4 : 17205017 .. 17205684 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTTCCGAGCAATATTCATGAGGCACATGTGTACCTGAACTTGGACTATTTAGATAATGTTGGAGGATCGTCTTCGGCGTGGGTGACACTTCAGGTTAGTTTCATTAGTCAGTAATTAATTTTCTAGATCCGATAGTGTGTTTTTTTTATAGATGTCTCGCAACCCACTCCCACTCCCACTTTGAGGAGACGTCGGCACTCCTGGAACTTGGAGTTGGAAAGGTACATACTGTGAAATTGGAAGATCCTCATTTCAATCCCCCCATGAGGGGACAAGTGTGTCTCACCACATGCTGTTCATTTTAGCTGCACGATCGGTGTATTAACACGAGACACGTTTCTGATCGAGGCCCTAAAGTTGGCTCATGTACCTCGAGAGTACATCGAGGTTGTCAAGGGTGGCCTACGGGTAAATTTGTAAATTATTTAACATATATATATATTGAACCTACATATGTAAAATACTAATCTTTATGTATTGTTCTTTTGTAGCAATGGTTCATGCTAGATTTCGAAGATCCAACACTTACTCAGTTTGTTGAGCATCAAATGCTCAACGTGTGGAAGGAATTTAGGGAAGACAACCACCGACATTTCAAGCAATACAACGACCCTGAAGAAGCACGTGCAAACCCACCACCTAGATTGGTCGATCATGTGTAA

mRNA sequence

ATGTCATTTCCGAGCAATATTCATGAGGCACATGTGTACCTGAACTTGGACTATTTAGATAATGTTGGAGGATCGTCTTCGGCGTGGGTGACACTTCAGGAGACGTCGGCACTCCTGGAACTTGGAGTTGGAAAGGTACATACTGTGAAATTGGAAGATCCTCATTTCAATCCCCCCATGAGGGGACAAGCCCTAAAGTTGGCTCATGTACCTCGAGAGTACATCGAGGTTGTCAAGGGTGGCCTACGGCAATGGTTCATGCTAGATTTCGAAGATCCAACACTTACTCAGTTTGTTGAGCATCAAATGCTCAACGTGTGGAAGGAATTTAGGGAAGACAACCACCGACATTTCAAGCAATACAACGACCCTGAAGAAGCACGTGCAAACCCACCACCTAGATTGGTCGATCATGTGTAA

Coding sequence (CDS)

ATGTCATTTCCGAGCAATATTCATGAGGCACATGTGTACCTGAACTTGGACTATTTAGATAATGTTGGAGGATCGTCTTCGGCGTGGGTGACACTTCAGGAGACGTCGGCACTCCTGGAACTTGGAGTTGGAAAGGTACATACTGTGAAATTGGAAGATCCTCATTTCAATCCCCCCATGAGGGGACAAGCCCTAAAGTTGGCTCATGTACCTCGAGAGTACATCGAGGTTGTCAAGGGTGGCCTACGGCAATGGTTCATGCTAGATTTCGAAGATCCAACACTTACTCAGTTTGTTGAGCATCAAATGCTCAACGTGTGGAAGGAATTTAGGGAAGACAACCACCGACATTTCAAGCAATACAACGACCCTGAAGAAGCACGTGCAAACCCACCACCTAGATTGGTCGATCATGTGTAA
Homology
[Close]
BLAST of CSPI04G19430 vs. TrEMBL
Match: E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-18
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 63  QALKLAHVPREYIEVVKGGLRQWFMLDFEDPTLTQFVEHQMLNVWKEFREDNHRHFKQYN 122
           + LK   V REYIEVVKG L+++F+LDF D  + +FVEHQM+  +KEF+ D HRHFK+Y+
Sbjct: 94  RCLKWVDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYS 153

Query: 123 DPEEARANPPPRLV 137
           DPEEARANPP  LV
Sbjct: 154 DPEEARANPPNALV 167

[Close]
BLAST of CSPI04G19430 vs. NCBI nr
Match: gi|307136235|gb|ADN34071.1| (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 99.4 bits (246), Expect = 5.4e-18
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 63  QALKLAHVPREYIEVVKGGLRQWFMLDFEDPTLTQFVEHQMLNVWKEFREDNHRHFKQYN 122
           + LK   V REYIEVVKG L+++F+LDF D  + +FVEHQM+  +KEF+ D HRHFK+Y+
Sbjct: 94  RCLKWVDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYS 153

Query: 123 DPEEARANPPPRLV 137
           DPEEARANPP  LV
Sbjct: 154 DPEEARANPPNALV 167

[Close]
BLAST of CSPI04G19430 vs. NCBI nr
Match: gi|778665376|ref|XP_011648549.1| (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 7.1e-10
Identity = 59/138 (42.75%), Postives = 72/138 (52.17%), Query Frame = 1 

Query: 1   MSFPSNIHEAHVYLNLDYLDNVGGSS-------------SAWVTLQETSALLELGV---- 60
           MSFPS I E  VYLNLD LDN  G S             +A +  ++ S  LEL      
Sbjct: 686 MSFPSGIREGDVYLNLDTLDNAEGLSLVGETSDASQFTLTATLRRRQHSRNLELERYILQ 745

Query: 61  -GKVH-TVKLE-DPHFNP-PMRG--------------QALKLAHVPREYIEVVKGGLRQW 104
            GK+  ++ LE D   +P P+R               Q LK   VP+EYIEVVK    QW
Sbjct: 746 NGKILISIPLEGDKPISPHPIRFSCTIDVLTRDTFPIQILKWVDVPQEYIEVVK----QW 805

The following BLAST results are available for this feature:
BLAST of CSPI04G19430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G19430 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC72_CUCME3.8e-1862.16CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CSPI04G19430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G19430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136235|gb|ADN34071.1|5.4e-1862.16CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
gi|778665376|ref|XP_011648549.1|7.1e-1042.75PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G19430.1CSPI04G19430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G19430Melon (DHL92) v3.6.1cpimedB316
CSPI04G19430Cucumber (Gy14) v2cgybcpiB170
CSPI04G19430Silver-seed gourdcarcpiB0513
CSPI04G19430Cucumber (Chinese Long) v3cpicucB212
CSPI04G19430Watermelon (97103) v2cpiwmbB312
CSPI04G19430Cucumber (Gy14) v1cgycpiB267
CSPI04G19430Cucurbita maxima (Rimu)cmacpiB886
CSPI04G19430Cucurbita moschata (Rifu)cmocpiB867
CSPI04G19430Cucumber (Chinese Long) v2cpicuB181
CSPI04G19430Melon (DHL92) v3.5.1cpimeB325
CSPI04G19430Watermelon (Charleston Gray)cpiwcgB314
CSPI04G19430Watermelon (97103) v1cpiwmB341
CSPI04G19430Bottle gourd (USVL1VR-Ls)cpilsiB249