CSPI04G18930 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G18930
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionNuclease domain-containing protein 1
LocationChr4 : 16472524 .. 16472914 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTCTTCTTTCTTTTTTACCATTGTTTTATCTTTTGAGTCCATTTGTTATGTTGAAGGGGAGAACTATGTTGAAGGGGAGGAAGTGTCCAATCGTGCAACTGTTGAAAGCAAACAGAAAGAAGTGTTCAAGGTTTGCAACTTGGATGTGGATATTTCTGAGTAACTTTTACTTCTTGTTGTTTGCGACCCTTTTCTATTGTCACACTCAGGTAATTGTCACCGAGGTTTTGGATGGTGACAAGTTTTATGTTCAGACAATTCCGAACCAAACAGCCACTTCTCTACAGCAGCAACTAGAGACTTTGAATCTTCAAGAAGTCCCTTTAATTTGTGGTTTTAGTCCTAAAAAAGGTGATATCGTCCTAGCTCAATTTAGTTCAGACAAC

mRNA sequence

ATGTGTTCTTCTTTCTTTTTTACCATTGTTTTATCTTTTGAGTCCATTTGTTATGTTGAAGGGGAGAACTATGTTGAAGGGGAGGAAGTGTCCAATCGTGCAACTGTTGAAAGCAAACAGAAAGAAGTGTTCAAGGTAATTGTCACCGAGGTTTTGGATGGTGACAAGTTTTATGTTCAGACAATTCCGAACCAAACAGCCACTTCTCTACAGCAGCAACTAGAGACTTTGAATCTTCAAGAAGTCCCTTTAATTTGTGGTTTTAGTCCTAAAAAAGGTGATATCGTCCTAGCTCAATTTAGTTCAGACAAC

Coding sequence (CDS)

ATGTGTTCTTCTTTCTTTTTTACCATTGTTTTATCTTTTGAGTCCATTTGTTATGTTGAAGGGGAGAACTATGTTGAAGGGGAGGAAGTGTCCAATCGTGCAACTGTTGAAAGCAAACAGAAAGAAGTGTTCAAGGTAATTGTCACCGAGGTTTTGGATGGTGACAAGTTTTATGTTCAGACAATTCCGAACCAAACAGCCACTTCTCTACAGCAGCAACTAGAGACTTTGAATCTTCAAGAAGTCCCTTTAATTTGTGGTTTTAGTCCTAAAAAAGGTGATATCGTCCTAGCTCAATTTAGTTCAGACAAC
Homology
[Close]
BLAST of CSPI04G18930 vs. TrEMBL
Match: E5GBL0_CUCME (Short-chain dehydrogenase/reductase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.6e-28
Identity = 70/83 (84.34%), Postives = 72/83 (86.75%), Query Frame = 1 

Query: 22  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQE 81
           ENYVEGEEVSN A VESKQKEV KVIVTEVL G KFYVQTI +Q ATSLQQQL  LNLQE
Sbjct: 713 ENYVEGEEVSNGAAVESKQKEVLKVIVTEVLGGGKFYVQTIGDQKATSLQQQLAALNLQE 772

Query: 82  VPLICGFSPKKGDIVLAQFSSDN 105
           VPLI  FSPKKGDIVLAQFS+DN
Sbjct: 773 VPLIGAFSPKKGDIVLAQFSADN 795

[Close]
BLAST of CSPI04G18930 vs. TrEMBL
Match: A0A0A0LRJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000020 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27
Identity = 69/83 (83.13%), Postives = 72/83 (86.75%), Query Frame = 1 

Query: 22  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQE 81
           ENYVEGEEVSN A VESKQKEV KVIVTEVL G KFYVQTI +Q ATSLQQQL  LNLQE
Sbjct: 713 ENYVEGEEVSNGAAVESKQKEVLKVIVTEVLGGGKFYVQTIGDQKATSLQQQLAALNLQE 772

Query: 82  VPLICGFSPKKGDIVLAQFSSDN 105
           VPLI  F+PKKGDIVLAQFS+DN
Sbjct: 773 VPLIGAFNPKKGDIVLAQFSADN 795

[Close]
BLAST of CSPI04G18930 vs. TrEMBL
Match: D7TYP5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0283g00020 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-24
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 1 

Query: 22  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQE 81
           ENYVEGEEVSN +  ESKQKEV KV+VTE+L G +FYVQTI +Q   S+QQQL +LNLQE
Sbjct: 717 ENYVEGEEVSNGSATESKQKEVLKVVVTEILGGGRFYVQTIGDQRVASIQQQLASLNLQE 776

Query: 82  VPLICGFSPKKGDIVLAQFSSDN 105
            P+I  F+PKKGDIVLAQFS+DN
Sbjct: 777 APVIGAFNPKKGDIVLAQFSADN 799

[Close]
BLAST of CSPI04G18930 vs. TrEMBL
Match: A5BP89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034601 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-24
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 1 

Query: 22  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQE 81
           ENYVEGEEVSN +  ESKQKEV KV+VTE+L G +FYVQTI +Q   S+QQQL +LNLQE
Sbjct: 700 ENYVEGEEVSNGSATESKQKEVLKVVVTEILGGGRFYVQTIGDQRVASIQQQLASLNLQE 759

Query: 82  VPLICGFSPKKGDIVLAQFSSDN 105
            P+I  F+PKKGDIVLAQFS+DN
Sbjct: 760 APVIGAFNPKKGDIVLAQFSADN 782

[Close]
BLAST of CSPI04G18930 vs. TrEMBL
Match: A0A067JF85_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26343 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.9e-24
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 1 

Query: 22  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQE 81
           ENYVEGEEVSN   VESKQKEV KV+V+EVL G KFYVQ + +Q   S+QQQL +LNLQE
Sbjct: 713 ENYVEGEEVSNGPAVESKQKEVLKVVVSEVLGGGKFYVQAVGDQKVASIQQQLASLNLQE 772

Query: 82  VPLICGFSPKKGDIVLAQFSSDN 105
            P+I  F+PKKGDIVLAQFS+DN
Sbjct: 773 APVIGAFNPKKGDIVLAQFSADN 795

[Close]
BLAST of CSPI04G18930 vs. TAIR10
Match: AT5G61780.1 (AT5G61780.1 TUDOR-SN protein 2)

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-22
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 22  ENYVEGEEVSNRAT-VESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQ 81
           ENYVEGEEV N ++ VE++QKE  KV+VTEVL G +FYVQT+ +Q   S+Q QL  L+L+
Sbjct: 710 ENYVEGEEVVNGSSKVETRQKETLKVVVTEVLGGGRFYVQTVGDQKVASIQNQLAALSLK 769

Query: 82  EVPLICGFSPKKGDIVLAQFSSDN 105
           + P+I  F+PKKGDIVLAQFS DN
Sbjct: 770 DAPIIGSFNPKKGDIVLAQFSLDN 793

[Close]
BLAST of CSPI04G18930 vs. TAIR10
Match: AT5G07350.2 (AT5G07350.2 TUDOR-SN protein 1)

HSP 1 Score: 100.1 bits (248), Expect = 8.3e-22
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1 

Query: 22  ENYVEGEEVSN--RATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNL 81
           ENYVEGEEVSN    TVE++QKE  KV+VTEVL G +FYVQ+  +Q   S+Q QL +L++
Sbjct: 713 ENYVEGEEVSNGNTNTVETRQKETLKVVVTEVLGGGRFYVQSAGDQKIASIQNQLASLSI 772

Query: 82  QEVPLICGFSPKKGDIVLAQFSSDN 105
           ++ P+I  F+PK+GDIVLAQFS DN
Sbjct: 773 KDAPIIGSFNPKRGDIVLAQFSLDN 797

[Close]
BLAST of CSPI04G18930 vs. NCBI nr
Match: gi|659128761|ref|XP_008464356.1| (PREDICTED: staphylococcal nuclease domain-containing protein 1 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 9.5e-28
Identity = 70/83 (84.34%), Postives = 72/83 (86.75%), Query Frame = 1 

Query: 22  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQE 81
           ENYVEGEEVSN A VESKQKEV KVIVTEVL G KFYVQTI +Q ATSLQQQL  LNLQE
Sbjct: 713 ENYVEGEEVSNGAAVESKQKEVLKVIVTEVLGGGKFYVQTIGDQKATSLQQQLAALNLQE 772

Query: 82  VPLICGFSPKKGDIVLAQFSSDN 105
           VPLI  FSPKKGDIVLAQFS+DN
Sbjct: 773 VPLIGAFSPKKGDIVLAQFSADN 795

[Close]
BLAST of CSPI04G18930 vs. NCBI nr
Match: gi|449440482|ref|XP_004138013.1| (PREDICTED: staphylococcal nuclease domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-27
Identity = 69/83 (83.13%), Postives = 72/83 (86.75%), Query Frame = 1 

Query: 22  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQE 81
           ENYVEGEEVSN A VESKQKEV KVIVTEVL G KFYVQTI +Q ATSLQQQL  LNLQE
Sbjct: 713 ENYVEGEEVSNGAAVESKQKEVLKVIVTEVLGGGKFYVQTIGDQKATSLQQQLAALNLQE 772

Query: 82  VPLICGFSPKKGDIVLAQFSSDN 105
           VPLI  F+PKKGDIVLAQFS+DN
Sbjct: 773 VPLIGAFNPKKGDIVLAQFSADN 795

[Close]
BLAST of CSPI04G18930 vs. NCBI nr
Match: gi|147855642|emb|CAN83456.1| (hypothetical protein VITISV_034601 [Vitis vinifera])

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-24
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 1 

Query: 22  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQE 81
           ENYVEGEEVSN +  ESKQKEV KV+VTE+L G +FYVQTI +Q   S+QQQL +LNLQE
Sbjct: 700 ENYVEGEEVSNGSATESKQKEVLKVVVTEILGGGRFYVQTIGDQRVASIQQQLASLNLQE 759

Query: 82  VPLICGFSPKKGDIVLAQFSSDN 105
            P+I  F+PKKGDIVLAQFS+DN
Sbjct: 760 APVIGAFNPKKGDIVLAQFSADN 782

[Close]
BLAST of CSPI04G18930 vs. NCBI nr
Match: gi|225447723|ref|XP_002273150.1| (PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera])

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-24
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 1 

Query: 22  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQE 81
           ENYVEGEEVSN +  ESKQKEV KV+VTE+L G +FYVQTI +Q   S+QQQL +LNLQE
Sbjct: 717 ENYVEGEEVSNGSATESKQKEVLKVVVTEILGGGRFYVQTIGDQRVASIQQQLASLNLQE 776

Query: 82  VPLICGFSPKKGDIVLAQFSSDN 105
            P+I  F+PKKGDIVLAQFS+DN
Sbjct: 777 APVIGAFNPKKGDIVLAQFSADN 799

[Close]
BLAST of CSPI04G18930 vs. NCBI nr
Match: gi|802770122|ref|XP_012090546.1| (PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas])

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-23
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 1 

Query: 22  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQE 81
           ENYVEGEEVSN   VESKQKEV KV+V+EVL G KFYVQ + +Q   S+QQQL +LNLQE
Sbjct: 713 ENYVEGEEVSNGPAVESKQKEVLKVVVSEVLGGGKFYVQAVGDQKVASIQQQLASLNLQE 772

Query: 82  VPLICGFSPKKGDIVLAQFSSDN 105
            P+I  F+PKKGDIVLAQFS+DN
Sbjct: 773 APVIGAFNPKKGDIVLAQFSADN 795

The following BLAST results are available for this feature:
BLAST of CSPI04G18930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G18930 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBL0_CUCME6.6e-2884.34Short-chain dehydrogenase/reductase OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LRJ8_CUCSA1.5e-2783.13Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000020 PE=4 SV=1[more]
D7TYP5_VITVI3.4e-2471.08Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0283g00020 PE=4 SV=... [more]
A5BP89_VITVI3.4e-2471.08Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034601 PE=4 SV=1[more]
A0A067JF85_JATCU9.9e-2471.08Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26343 PE=4 SV=1[more]
BLAST of CSPI04G18930 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61780.11.7e-2261.90 TUDOR-SN protein 2[more]
AT5G07350.28.3e-2260.00 TUDOR-SN protein 1[more]
BLAST of CSPI04G18930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128761|ref|XP_008464356.1|9.5e-2884.34PREDICTED: staphylococcal nuclease domain-containing protein 1 [Cucumis melo][more]
gi|449440482|ref|XP_004138013.1|2.1e-2783.13PREDICTED: staphylococcal nuclease domain-containing protein 1 [Cucumis sativus][more]
gi|147855642|emb|CAN83456.1|4.9e-2471.08hypothetical protein VITISV_034601 [Vitis vinifera][more]
gi|225447723|ref|XP_002273150.1|4.9e-2471.08PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera][more]
gi|802770122|ref|XP_012090546.1|1.4e-2371.08PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0035194posttranscriptional gene silencing by RNA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035194 posttranscriptional gene silencing by RNA
biological_process GO:1903506 regulation of nucleic acid-templated transcription
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006401 RNA catabolic process
cellular_component GO:0016442 RISC complex
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003712 transcription cofactor activity
molecular_function GO:0004518 nuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G18930.1CSPI04G18930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12302EBNA2 BINDING PROTEIN P100coord: 22..104
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G18930Csa4G420710Cucumber (Chinese Long) v2cpicuB181
CSPI04G18930CsaV3_4G029310Cucumber (Chinese Long) v3cpicucB212
CSPI04G18930CsGy4G017930Cucumber (Gy14) v2cgybcpiB170
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G18930Cucurbita pepo (Zucchini)cpecpiB068
CSPI04G18930Cucurbita pepo (Zucchini)cpecpiB488
CSPI04G18930Bottle gourd (USVL1VR-Ls)cpilsiB248
CSPI04G18930Melon (DHL92) v3.6.1cpimedB323
CSPI04G18930Silver-seed gourdcarcpiB0615
CSPI04G18930Watermelon (97103) v2cpiwmbB310
CSPI04G18930Wax gourdcpiwgoB409
CSPI04G18930Cucumber (Gy14) v1cgycpiB530
CSPI04G18930Cucurbita maxima (Rimu)cmacpiB678
CSPI04G18930Cucurbita maxima (Rimu)cmacpiB883
CSPI04G18930Cucurbita moschata (Rifu)cmocpiB863
CSPI04G18930Melon (DHL92) v3.5.1cpimeB331
CSPI04G18930Watermelon (Charleston Gray)cpiwcgB318
CSPI04G18930Watermelon (97103) v1cpiwmB347