CSPI04G17090 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G17090
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 14503518 .. 14503703 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTATATCAAATCAAACACTTTTGGATCCTTCATTGGCAAAGCAAAAGAGAACGAACAGAAAATTTTGACCAAGAAGGAAGATGAAGAAGATTACTTGACTGACAAGGGAAATAAGTGGAAGACAGCTGACATCCCCTTCAAAATCGTTCACAAGACTGAAGAAGATGAAGCAACAGTGTGA

mRNA sequence

ATGCCGTATATCAAATCAAACACTTTTGGATCCTTCATTGGCAAAGCAAAAGAGAACGAACAGAAAATTTTGACCAAGAAGGAAGATGAAGAAGATTACTTGACTGACAAGGGAAATAAGTGGAAGACAGCTGACATCCCCTTCAAAATCGTTCACAAGACTGAAGAAGATGAAGCAACAGTGTGA

Coding sequence (CDS)

ATGCCGTATATCAAATCAAACACTTTTGGATCCTTCATTGGCAAAGCAAAAGAGAACGAACAGAAAATTTTGACCAAGAAGGAAGATGAAGAAGATTACTTGACTGACAAGGGAAATAAGTGGAAGACAGCTGACATCCCCTTCAAAATCGTTCACAAGACTGAAGAAGATGAAGCAACAGTGTGA
Homology
[Close]
BLAST of CSPI04G17090 vs. TrEMBL
Match: A0A0A0L0D9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338970 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1 

Query: 1  MPYIKSNTFGSFIGKAKENEQKILTKKEDEEDYLTDKGNKWKTADIPFKIVHKTEEDEAT 60
          MPYIKSNTFGSFIGKAKENEQKILTKKEDEEDYLTDKGNKWKTADIPFKIVHK EEDEAT
Sbjct: 1  MPYIKSNTFGSFIGKAKENEQKILTKKEDEEDYLTDKGNKWKTADIPFKIVHKIEEDEAT 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]
BLAST of CSPI04G17090 vs. NCBI nr
Match: gi|700199336|gb|KGN54494.1| (hypothetical protein Csa_4G338970 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1 

Query: 1  MPYIKSNTFGSFIGKAKENEQKILTKKEDEEDYLTDKGNKWKTADIPFKIVHKTEEDEAT 60
          MPYIKSNTFGSFIGKAKENEQKILTKKEDEEDYLTDKGNKWKTADIPFKIVHK EEDEAT
Sbjct: 1  MPYIKSNTFGSFIGKAKENEQKILTKKEDEEDYLTDKGNKWKTADIPFKIVHKIEEDEAT 60

Query: 61 V 62
          V
Sbjct: 61 V 61

The following BLAST results are available for this feature:
BLAST of CSPI04G17090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G17090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0D9_CUCSA2.2e-2698.36Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338970 PE=4 SV=1[more]
BLAST of CSPI04G17090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G17090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199336|gb|KGN54494.1|3.1e-2698.36hypothetical protein Csa_4G338970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G17090.1CSPI04G17090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G17090Csa4G338970Cucumber (Chinese Long) v2cpicuB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G17090Watermelon (97103) v1cpiwmB351
CSPI04G17090Cucumber (Gy14) v2cgybcpiB170
CSPI04G17090Cucumber (Chinese Long) v3cpicucB212
CSPI04G17090Cucumber (Gy14) v1cgycpiB400