CSPI04G17000 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G17000
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr4 : 14420870 .. 14421613 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACCTATTGGCAAATGGTATTGTTGAAGGTCAATCTACTTCTAGACCTCCTTATTTTGATGGTTCAAATTATGCATATTGGAAAGCTAGAATGAAATTTTGTTTGCAATCTATTGACTATAATTTGTGGTTAATTGTTGCTAAAGGTCCTTATGTACCCATGAAAAATGTTGATAATGTTGATACGCCTAAATTAGAAGAAGAGTATGATGAAAATGAAATGAAAAAGTGTTCTTTTAATGCTAAGTTTATTAATTGTTTGTATTATGCCTTGAGTAAAGATGAATTTAATATAATATCCATGTGTTCTTCCACTCAAGAAATTTGGAATACTCTTGAAATTACTCATGAAGGAACAAATCAAGTTAAAGAGTCTAAAATTAGCATGTTTGTTCATAATTATGAATTGTTTAAGATGGATGCTAATGAGACTATCACCGATATGTTTACTAGATTTACTAACATCATAAATGCTTTGAAGGGTCTTGGTAAAGTTTATACAACTTCCGAAAATGTTAGAAAAATTATAAGGTCTCTACCTAAGACTTGGGAAGCTAAGGTAACGACAATCCAATTAGCAAAGGATCTCACCAAACTTCCACTAGAGGAGCTTATTGGCTCACTCATGACTCATGAGATCATTATGAAGAAGCACTCGGAGGATGAGTCCAAAAAGAAGAAGAGCATTATTGTATTAAAGACTATCTCCTTGGAAGTTGATCCCGGAGATGAAGATTGA

mRNA sequence

ATGGCAAACCTATTGGCAAATGGTATTGTTGAAGGTCAATCTACTTCTAGACCTCCTTATTTTGATGGTTCAAATTATGCATATTGGAAAGCTAGAATGAAATTTTGTTTGCAATCTATTGACTATAATTTGTGGTTAATTGTTGCTAAAGGTCCTTATGTACCCATGAAAAATGTTGATAATGTTGATACGCCTAAATTAGAAGAAGAGTATGATGAAAATGAAATGAAAAAGTGTTCTTTTAATGCTAAGTTTATTAATTGTTTGTATTATGCCTTGAGTAAAGATGAATTTAATATAATATCCATGTGTTCTTCCACTCAAGAAATTTGGAATACTCTTGAAATTACTCATGAAGGAACAAATCAAGTTAAAGAGTCTAAAATTAGCATGTTTGTTCATAATTATGAATTGTTTAAGATGGATGCTAATGAGACTATCACCGATATGTTTACTAGATTTACTAACATCATAAATGCTTTGAAGGGTCTTGGTAAAGTTTATACAACTTCCGAAAATGTTAGAAAAATTATAAGGTCTCTACCTAAGACTTGGGAAGCTAAGGTAACGACAATCCAATTAGCAAAGGATCTCACCAAACTTCCACTAGAGGAGCTTATTGGCTCACTCATGACTCATGAGATCATTATGAAGAAGCACTCGGAGGATGAGTCCAAAAAGAAGAAGAGCATTATTGTATTAAAGACTATCTCCTTGGAAGTTGATCCCGGAGATGAAGATTGA

Coding sequence (CDS)

ATGGCAAACCTATTGGCAAATGGTATTGTTGAAGGTCAATCTACTTCTAGACCTCCTTATTTTGATGGTTCAAATTATGCATATTGGAAAGCTAGAATGAAATTTTGTTTGCAATCTATTGACTATAATTTGTGGTTAATTGTTGCTAAAGGTCCTTATGTACCCATGAAAAATGTTGATAATGTTGATACGCCTAAATTAGAAGAAGAGTATGATGAAAATGAAATGAAAAAGTGTTCTTTTAATGCTAAGTTTATTAATTGTTTGTATTATGCCTTGAGTAAAGATGAATTTAATATAATATCCATGTGTTCTTCCACTCAAGAAATTTGGAATACTCTTGAAATTACTCATGAAGGAACAAATCAAGTTAAAGAGTCTAAAATTAGCATGTTTGTTCATAATTATGAATTGTTTAAGATGGATGCTAATGAGACTATCACCGATATGTTTACTAGATTTACTAACATCATAAATGCTTTGAAGGGTCTTGGTAAAGTTTATACAACTTCCGAAAATGTTAGAAAAATTATAAGGTCTCTACCTAAGACTTGGGAAGCTAAGGTAACGACAATCCAATTAGCAAAGGATCTCACCAAACTTCCACTAGAGGAGCTTATTGGCTCACTCATGACTCATGAGATCATTATGAAGAAGCACTCGGAGGATGAGTCCAAAAAGAAGAAGAGCATTATTGTATTAAAGACTATCTCCTTGGAAGTTGATCCCGGAGATGAAGATTGA
Homology
[Close]
BLAST of CSPI04G17000 vs. TrEMBL
Match: A5AZ66_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004930 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.4e-61
Identity = 127/243 (52.26%), Postives = 162/243 (66.67%), Query Frame = 1 

Query: 11  EGQSTSRPPYFDGSNYAYWKARMKFCLQSIDYNLWLIVAKGPYVPMKNVDNVDTPKLEEE 70
           E  +  R P+F G+NY YWK RM + LQS D ++W ++  GP  P K VD +  PK ++E
Sbjct: 11  ENFTKHRAPFFTGTNYPYWKTRMTWYLQSTDLDVWDVIEDGPTFPTKLVDGILVPKPKQE 70

Query: 71  YDENEMKKCSFNAKFINCLYYALSKDEFNIISMCSSTQEIWNTLEITHEGTNQVKESKIS 130
           ++E + +    NAK    L  A+ ++E+NII  C S +EIW  LEITHE TNQVKESKI+
Sbjct: 71  WNELDRRIFQLNAKVAFTLQCAMDRNEYNIICQCKSAKEIWRLLEITHEETNQVKESKIN 130

Query: 131 MFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKIIRSLPKTWEAKVT 190
           + +HNYELF +  NETI +M TRFTNI+N L+ LGK Y  SE V KI+R LP  W  KVT
Sbjct: 131 LLIHNYELFLIKENETIVEMITRFTNIVNGLEALGKTYKESEKVMKILRLLPSKWHTKVT 190

Query: 191 TIQLAKDLTKLPLEELIGSLMTHEI-IMKKHSEDESKKKKSIIVLKTISLEVD-----PG 248
           TIQ AKDLTKLP+EELIGSLMT+EI + KK  E E KKKK+I +  T   + D     P 
Sbjct: 191 TIQEAKDLTKLPIEELIGSLMTYEINLAKKLQESEDKKKKNIALKATTKEKEDFEEEKPS 250

[Close]
BLAST of CSPI04G17000 vs. TrEMBL
Match: A5C8K0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.4e-60
Identity = 122/237 (51.48%), Postives = 159/237 (67.09%), Query Frame = 1 

Query: 11  EGQSTSRPPYFDGSNYAYWKARMKFCLQSIDYNLWLIVAKGPYVPMKNVDNVDTPKLEEE 70
           E  S  R P+F G++Y YWKARM + LQS D ++W ++  GP  P K VD V  PK ++E
Sbjct: 11  ENFSKHRAPFFTGTDYPYWKARMTWFLQSTDLDVWDVIEDGPTFPTKLVDGVLVPKPKKE 70

Query: 71  YDENEMKKCSFNAKFINCLYYALSKDEFNIISMCSSTQEIWNTLEITHEGTNQVKESKIS 130
           ++E + +    NAK +  L  A+ ++E+N I  C S +EIW  LEITHEGTNQVKESKI+
Sbjct: 71  WNELDRRNFQLNAKAVFTLQCAMDRNEYNRICQCKSAKEIWRLLEITHEGTNQVKESKIN 130

Query: 131 MFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKIIRSLPKTWEAKVT 190
           + VHNYELF M   ETI +M TRFT I+N L+ LG+V   SE V KI+RSLP  W  KVT
Sbjct: 131 ILVHNYELFSMKETETIVEMITRFTEIVNGLEALGRVINESEKVMKILRSLPSKWHTKVT 190

Query: 191 TIQLAKDLTKLPLEELIGSLMTHEIIMKKHSEDESKKKKSIIVLKTISLEVDPGDED 248
            IQ AKDLTKLP+EEL+GSLMT+EI + K  ++   KKK  I LK  + E +  +E+
Sbjct: 191 AIQEAKDLTKLPMEELLGSLMTYEISLTKQPQESEDKKKKNIALKATTKEEEDVEEE 247

[Close]
BLAST of CSPI04G17000 vs. TrEMBL
Match: A5BKT6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006955 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.2e-60
Identity = 128/253 (50.59%), Postives = 163/253 (64.43%), Query Frame = 1 

Query: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKFCLQSIDYNLWLIVAKGPYVPMKNVD 60
           MA   ++ + +  S  R P+F G++Y YWK RM + LQS D ++W ++  GP  P K VD
Sbjct: 1   MAIPSSSSLAKNVSKHRAPFFTGTDYPYWKTRMTWYLQSTDLDVWDVIEDGPNFPTKLVD 60

Query: 61  NVDTPKLEEEYDENEMKKCSFNAKFINCLYYALSKDEFNIISMCSSTQEIWNTLEITHEG 120
            V  PK ++E++E + +    NAK +  L  A+ ++E+N I  C S +EIW  LEITHEG
Sbjct: 61  GVLVPKPKQEWNELDRRNFQLNAKVVFTLQCAMDRNEYNRICQCKSAKEIWRLLEITHEG 120

Query: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKIIRS 180
           TNQVKESKI++ VHNYELF M   ETI +M T FT+I+N L+ LGK Y  SE V KI+RS
Sbjct: 121 TNQVKESKINLLVHNYELFSMKEXETIVEMITGFTDIVNGLEALGKTYKESEKVMKILRS 180

Query: 181 LPKTWEAKVTTIQLAKDLTKLPLEELIGSLMTHEI-IMKKHSEDESKKKKSIIVLKTISL 240
           LP  W  KVT IQ AKDLTKLP+EE IGSLMT+EI + KK  E E K KKSI +      
Sbjct: 181 LPSKWHTKVTAIQEAKDLTKLPMEEXIGSLMTYEINLTKKLQEGEDKNKKSIALKARTKE 240

Query: 241 EVD-----PGDED 248
           E D     P DED
Sbjct: 241 EEDVEEEKPSDED 253

[Close]
BLAST of CSPI04G17000 vs. TrEMBL
Match: A5AQM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 127/243 (52.26%), Postives = 160/243 (65.84%), Query Frame = 1 

Query: 11  EGQSTSRPPYFDGSNYAYWKARMKFCLQSIDYNLWLIVAKGPYVPMKNVDNVDTPKLEEE 70
           E  S  R P+F G++Y YWK RM + LQS D  +W ++  GP  P K VD V  PK ++E
Sbjct: 11  ENCSKHRAPFFTGTDYPYWKDRMTWYLQSTDLEVWDVIEDGPTFPTKLVDGVLVPKPKQE 70

Query: 71  YDENEMKKCSFNAKFINCLYYALSKDEFNIISMCSSTQEIWNTLEITHEGTNQVKESKIS 130
           ++E + +    NAK +  L  A+ ++E+N I  C S +EIW  LEITHEGTNQVKESKI+
Sbjct: 71  WNELDRRNFQLNAKVVFTLQCAMDRNEYNRICQCKSIKEIWRLLEITHEGTNQVKESKIN 130

Query: 131 MFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKIIRSLPKTWEAKVT 190
           + VHNYELF M   E+I +M TRFT I+N L+ LGKV   SE V KI+RSLP  W  KVT
Sbjct: 131 ILVHNYELFSMKETESIVEMITRFTEIVNGLEALGKVIXESEKVIKILRSLPSKWHTKVT 190

Query: 191 TIQLAKDLTKLPLEELIGSLMTHEI-IMKKHSEDESKKKKSIIVLKTISLEVD-----PG 248
            IQ AKDLTKLP+EEL+GSLMT+EI + K+  E E KKKKSI +  T   E D     P 
Sbjct: 191 AIQEAKDLTKLPMEELLGSLMTYEISLTKQLQESEDKKKKSIALKATTKEEEDVEEEKPS 250

[Close]
BLAST of CSPI04G17000 vs. TrEMBL
Match: A5BQ25_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002411 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.5e-59
Identity = 122/227 (53.74%), Postives = 155/227 (68.28%), Query Frame = 1 

Query: 11  EGQSTSRPPYFDGSNYAYWKARMKFCLQSIDYNLWLIVAKGPYVPMKNVDNVDTPKLEEE 70
           E  S  R P+F G++Y YWKARM + LQS D ++W ++  GP  P K VD    PK ++E
Sbjct: 11  ENFSKHRAPFFTGTDYPYWKARMTWFLQSTDLDVWDVIEDGPTFPTKLVDGFLVPKPKKE 70

Query: 71  YDENEMKKCSFNAKFINCLYYALSKDEFNIISMCSSTQEIWNTLEITHEGTNQVKESKIS 130
           ++E + +    NAK +  L  A+ ++E+N I  C S +EIW  LEITHEGTNQVKESKI+
Sbjct: 71  WNELDRRNFQLNAKAVFTLQCAMDRNEYNRICQCKSAKEIWRLLEITHEGTNQVKESKIN 130

Query: 131 MFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKIIRSLPKTWEAKVT 190
           + VHNYELF M   ETI +M TRFT I+N L+ LG+V   SE V KI+RSLP  W  KVT
Sbjct: 131 ILVHNYELFSMKETETIVEMITRFTEIVNGLESLGRVINESEKVMKILRSLPSKWHTKVT 190

Query: 191 TIQLAKDLTKLPLEELIGSLMTHEI-IMKKHSEDESKKKKSIIVLKT 237
            IQ AKDLTKLP+EEL+GSLMT+EI + K+  E E KKKKSI +  T
Sbjct: 191 AIQEAKDLTKLPMEELLGSLMTYEISLTKQLQESEDKKKKSIALKAT 237

[Close]
BLAST of CSPI04G17000 vs. NCBI nr
Match: gi|778665012|ref|XP_011648465.1| (PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus])

HSP 1 Score: 459.5 bits (1181), Expect = 3.6e-126
Identity = 233/247 (94.33%), Postives = 235/247 (95.14%), Query Frame = 1 

Query: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKFCLQSIDYNLWLIVAKGPYVPMKNVD 60
           MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMK  LQSIDYNLWLIVAKGPYVPMKNVD
Sbjct: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNVD 60

Query: 61  NVDTPKLEEEYDENEMKKCSFNAKFINCLYYALSKDEFNIISMCSSTQEIWNTLEITHEG 120
           NVDTPKLEEEYDENEMKKCSFNAK INCLY ALSKDEFN ISMCSS QEIWNTLEITHEG
Sbjct: 61  NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG 120

Query: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKIIRS 180
           TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKI+RS
Sbjct: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKILRS 180

Query: 181 LPKTWEAKVTTIQLAKDLTKLPLEELIGSLMTHEIIMKKHSEDESKKKKSIIVLKTISLE 240
           LPKTWEAKVT IQ AKDLTKLPLEELIGSLMTHEIIMK+H EDESKKKKS I LKTISLE
Sbjct: 181 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKS-IALKTISLE 240

Query: 241 VDPGDED 248
           VDP DED
Sbjct: 241 VDPEDED 246

[Close]
BLAST of CSPI04G17000 vs. NCBI nr
Match: gi|778730802|ref|XP_011659859.1| (PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus])

HSP 1 Score: 459.5 bits (1181), Expect = 3.6e-126
Identity = 233/247 (94.33%), Postives = 235/247 (95.14%), Query Frame = 1 

Query: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKFCLQSIDYNLWLIVAKGPYVPMKNVD 60
           MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMK  LQSIDYNLWLIVAKGPYVPMKNVD
Sbjct: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNVD 60

Query: 61  NVDTPKLEEEYDENEMKKCSFNAKFINCLYYALSKDEFNIISMCSSTQEIWNTLEITHEG 120
           NVDTPKLEEEYDENEMKKCSFNAK INCLY ALSKDEFN ISMCSS QEIWNTLEITHEG
Sbjct: 61  NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG 120

Query: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKIIRS 180
           TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKI+RS
Sbjct: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKILRS 180

Query: 181 LPKTWEAKVTTIQLAKDLTKLPLEELIGSLMTHEIIMKKHSEDESKKKKSIIVLKTISLE 240
           LPKTWEAKVT IQ AKDLTKLPLEELIGSLMTHEIIMK+H EDESKKKKS I LKTISLE
Sbjct: 181 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKS-IALKTISLE 240

Query: 241 VDPGDED 248
           VDP DED
Sbjct: 241 VDPEDED 246

[Close]
BLAST of CSPI04G17000 vs. NCBI nr
Match: gi|778688574|ref|XP_011652782.1| (PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus])

HSP 1 Score: 457.2 bits (1175), Expect = 1.8e-125
Identity = 232/247 (93.93%), Postives = 234/247 (94.74%), Query Frame = 1 

Query: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKFCLQSIDYNLWLIVAKGPYVPMKNVD 60
           MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMK  LQSIDYNLWLIVAKGPYVPMKNVD
Sbjct: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNVD 60

Query: 61  NVDTPKLEEEYDENEMKKCSFNAKFINCLYYALSKDEFNIISMCSSTQEIWNTLEITHEG 120
           NVDTPKLEEEYDENEMKKCSFNAK INCLY ALSKDEFN ISMCSS QEIWNTLEITHEG
Sbjct: 61  NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG 120

Query: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKIIRS 180
           TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIIN LKGLGKVYTTSENVRKI+RS
Sbjct: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINDLKGLGKVYTTSENVRKILRS 180

Query: 181 LPKTWEAKVTTIQLAKDLTKLPLEELIGSLMTHEIIMKKHSEDESKKKKSIIVLKTISLE 240
           LPKTWEAKVT IQ AKDLTKLPLEELIGSLMTHEIIMK+H EDESKKKKS I LKTISLE
Sbjct: 181 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKS-IALKTISLE 240

Query: 241 VDPGDED 248
           VDP DED
Sbjct: 241 VDPEDED 246

[Close]
BLAST of CSPI04G17000 vs. NCBI nr
Match: gi|778730824|ref|XP_011659862.1| (PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 2.7e-105
Identity = 206/247 (83.40%), Postives = 208/247 (84.21%), Query Frame = 1 

Query: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKFCLQSIDYNLWLIVAKGPYVPMKNVD 60
           MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMK  LQSIDYNLWLIVAKGPYVPMKNVD
Sbjct: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNVD 60

Query: 61  NVDTPKLEEEYDENEMKKCSFNAKFINCLYYALSKDEFNIISMCSSTQEIWNTLEITHEG 120
           NVDTPKLEEE                              ISMCSS QEIWNTLEITHEG
Sbjct: 61  NVDTPKLEEE------------------------------ISMCSSAQEIWNTLEITHEG 120

Query: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKIIRS 180
           TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKI+RS
Sbjct: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKILRS 180

Query: 181 LPKTWEAKVTTIQLAKDLTKLPLEELIGSLMTHEIIMKKHSEDESKKKKSIIVLKTISLE 240
           LPKTWEAKVT IQ AKDLTKLPLEELIGSLMTHEIIMK+H EDESKKKKS I LKTISLE
Sbjct: 181 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKS-IALKTISLE 216

Query: 241 VDPGDED 248
           VDP DED
Sbjct: 241 VDPEDED 216

[Close]
BLAST of CSPI04G17000 vs. NCBI nr
Match: gi|778708527|ref|XP_011656224.1| (PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 2.3e-64
Identity = 150/247 (60.73%), Postives = 156/247 (63.16%), Query Frame = 1 

Query: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKFCLQSIDYNLWLIVAKGPYVPMKNVD 60
           MANLLANGIVEGQSTSRPPYFD                            GPYVPMKNVD
Sbjct: 1   MANLLANGIVEGQSTSRPPYFD----------------------------GPYVPMKNVD 60

Query: 61  NVDTPKLEEEYDENEMKKCSFNAKFINCLYYALSKDEFNIISMCSSTQEIWNTLEITHEG 120
           NVDTPKLEEEYDENEMKKCSFNAK INCLY  LSKDE N ISMCSS QEIWNTLEITHEG
Sbjct: 61  NVDTPKLEEEYDENEMKKCSFNAKAINCLYCTLSKDEVNRISMCSSAQEIWNTLEITHEG 120

Query: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKIIRS 180
           TNQ                       +  ++T   N+   L+ L K              
Sbjct: 121 TNQ----------------------GLGKVYTTSENVRKILRSLPKT------------- 179

Query: 181 LPKTWEAKVTTIQLAKDLTKLPLEELIGSLMTHEIIMKKHSEDESKKKKSIIVLKTISLE 240
               WEAKVT IQ AKDLTKLPLEELIGSLMTHEIIMK+H EDESKKKKS I LKTISLE
Sbjct: 181 ----WEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKS-IALKTISLE 179

Query: 241 VDPGDED 248
           VDP DED
Sbjct: 241 VDPEDED 179

The following BLAST results are available for this feature:
BLAST of CSPI04G17000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G17000 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AZ66_VITVI6.4e-6152.26Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004930 PE=4 SV=1[more]
A5C8K0_VITVI1.4e-6051.48Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1[more]
A5BKT6_VITVI3.2e-6050.59Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006955 PE=4 SV=1[more]
A5AQM5_VITVI1.2e-5952.26Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1[more]
A5BQ25_VITVI3.5e-5953.74Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002411 PE=4 SV=1[more]
BLAST of CSPI04G17000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G17000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665012|ref|XP_011648465.1|3.6e-12694.33PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus][more]
gi|778730802|ref|XP_011659859.1|3.6e-12694.33PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus][more]
gi|778688574|ref|XP_011652782.1|1.8e-12593.93PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus][more]
gi|778730824|ref|XP_011659862.1|2.7e-10583.40PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus][more]
gi|778708527|ref|XP_011656224.1|2.3e-6460.73PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G17000.1CSPI04G17000.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 9..235
score: 2.1
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 9..235
score: 2.1
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 82..218
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G17000Cucumber (Chinese Long) v3cpicucB212
CSPI04G17000Cucumber (Gy14) v1cgycpiB400
CSPI04G17000Cucumber (Chinese Long) v2cpicuB181
CSPI04G17000Watermelon (97103) v1cpiwmB351
CSPI04G17000Bottle gourd (USVL1VR-Ls)cpilsiB265
CSPI04G17000Cucumber (Gy14) v2cgybcpiB170