CSPI04G16950 (gene) Wild cucumber (PI 183967)

NameCSPI04G16950
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 14371328 .. 14372282 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGAGATGTAACGGCTAGCAAGGGGATTGCCAAATCAATGAGTAATTTAATATGGTTAGAGCAATTGAGACATTGCTATGACAGAGTAATTGGTGTTCAATGGATTGGTTGGAATTGGTGGGATTCGCCTTAGGGTATTTATGGAAAGATCATAGAAATATTTACCATAATTCCCAATTCCTAAATCTTTTCCTTTTTTATTCCCTTGTGTATTCTATTTATTCTTCCTTATTGTACCTATTGTAAAATTGATCAGAAAATAATAAGAAAAAATACCGTGGTTTTTCTCCTTGTACTCGGGTTTTTACATAAATTTGTCTGTTCTTGTTTCTACTTTCAATATGGTATCAAAGCGGGTCATTGAACAAACCCTAAACAACACAACTAGTGATGGAAATCAAACGGAGGAGACAAGCACCAGCTTTACTGTCGTTGCCGCCGCCGTCGATGCTTGGATCGGTGTTGCCATGGACAAATGGTTATGTCGCCTTCAGAAAATGTCGGAAAATGTATTCTCGTCAATTCCACCGTCATCTATGCCGTCAAAACTCTCTCACATGCCTCCACACGCCGCTGCCAAACTTCCACGTGCCGCCGCCAGAGCTATATGCGCCGGTCCATCTTCCTCAGACAGTTCTAACCATCCCATCTGTGCAACCGTCTTCTTCATTCGCGACCTATATTGTTCCCCATGCCCCGATTCACGGTCTGCCACCTAATTCCGACCGGCCACCACCACTTCTGCCATCAAATCGGAATGCCCTGCCACCCACTTACCTTAGTTATCATTTCGATGTTAGGAACCCTCAAATCCACTCAATATTTGAGGTTGGTGAATCTTTGGCACATTCCAACCCTAACGTGCAAGGTTCCTCTTTTTCTTCGAGAATAGCTCAACAGAAACTGAAAGGGCTTCATCAATAGAATGCAGCAATTGAGGCACCTGAGGGACGAC

mRNA sequence

ATGGAAATCAAACGGAGGAGACAAGCACCAGCTTTACTGTCGTTGCCGCCGCCGTCGATGCTTGGATCGGTGTTGCCATGGACAAATGGTTATGTCGCCTTCAGAAAATGTCGGAAAATGTATTCTCGTCAATTCCACCGTCATCTATGCCGTCAAAACTCTCTCACATGCCTCCACACGCCGCTGCCAAACTTCCACGTGCCGCCGCCAGAGCTATATGCGCCGGTCCATCTTCCTCAGACAGTTCTAACCATCCCATCTGTGCAACCGTCTTCTTCATTCGCGACCTATATTGTTCCCCATGCCCCGATTCACGGTCTGCCACCTAATTCCGACCGGCCACCACCACTTCTGCCATCAAATCGGAATGCCCTGCCACCCACTTACCTTAGTTATCATTTCGATGTTAGGAACCCTCAAATCCACTCAATATTTGAGGTTGGTGAATCTTTGGCACATTCCAACCCTAACGTGCAAGGTTCCTCTTTTTCTTCGAGAATAGCTCAACAGAAACTGAAAGGGCTTCATCAATAG

Coding sequence (CDS)

ATGGAAATCAAACGGAGGAGACAAGCACCAGCTTTACTGTCGTTGCCGCCGCCGTCGATGCTTGGATCGGTGTTGCCATGGACAAATGGTTATGTCGCCTTCAGAAAATGTCGGAAAATGTATTCTCGTCAATTCCACCGTCATCTATGCCGTCAAAACTCTCTCACATGCCTCCACACGCCGCTGCCAAACTTCCACGTGCCGCCGCCAGAGCTATATGCGCCGGTCCATCTTCCTCAGACAGTTCTAACCATCCCATCTGTGCAACCGTCTTCTTCATTCGCGACCTATATTGTTCCCCATGCCCCGATTCACGGTCTGCCACCTAATTCCGACCGGCCACCACCACTTCTGCCATCAAATCGGAATGCCCTGCCACCCACTTACCTTAGTTATCATTTCGATGTTAGGAACCCTCAAATCCACTCAATATTTGAGGTTGGTGAATCTTTGGCACATTCCAACCCTAACGTGCAAGGTTCCTCTTTTTCTTCGAGAATAGCTCAACAGAAACTGAAAGGGCTTCATCAATAG
BLAST of CSPI04G16950 vs. NCBI nr
Match: gi|778688605|ref|XP_004149788.2| (PREDICTED: kirola-like [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-08
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 1

Query: 97  YIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEV 148
           YI PH  I+ LPPN  +PPPLLPSN  A+PP   SYH DV+NPQ HS FEV
Sbjct: 160 YIAPHTRIYVLPPNFGQPPPLLPSNLYAMPPIDPSYHPDVKNPQNHSTFEV 210

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778688605|ref|XP_004149788.2|2.2e-0864.71PREDICTED: kirola-like [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G16950.1CSPI04G16950.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G16950Bottle gourd (USVL1VR-Ls)cpilsiB265
CSPI04G16950Cucumber (Gy14) v2cgybcpiB170
CSPI04G16950Cucumber (Chinese Long) v3cpicucB212
CSPI04G16950Cucumber (Gy14) v1cgycpiB400
CSPI04G16950Cucumber (Chinese Long) v2cpicuB181
CSPI04G16950Watermelon (97103) v1cpiwmB351