CSPI04G16800 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G16800
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 14175733 .. 14176794 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAACCAGCCCAACAAAACACCCCCATTAAAAGAACGGGGACTAACTAAGTAAAATGTTTCCTATGGAATAATTGCAAAAGCTCTTTGAAATCGAAGCCCAAAGGGACACCTGAAATCTGAGCAAAGACGAAATCTCACTATGCACCCTCTCCCTACCCCAAAAACACCTGTTCGTTTCTCACCCCAAATGTCCAGATAACCGCACCCTGACAAGTCATAAAAAGCCCAGTTTATCTTTGAAGGACTGATAGAGGAGGAACTCTTTGATTGTTGCTCTCACACTCCACATTACCAGCAAAGCTAATACTGAACAATGGAGGAAAGAGCTCCACACAGCTCGAGCATACTGGCAATCCCAAAAATGATGATCAAGATCTTCCTCTGCCTTTTGAAAAAGCATGCAACAAAAAGGCCCAAGAAGCGAAGTTCTCCTCCTAACAAGCTTGTCGATGGTATTAACCCGACCAAGCAACACTTGCCAAATGAAGAACCTAACTTTCTTAGGAACTTTAATCCTCCATACCACATAAAAAACAGACTCCTTAGGGGAATCCAACAACAAACTAAACAAGGATTTATAAGTATAACCCCGATTAGGATTAGGGTTCCAAACACGAGCATCGCTTCTCCCCTCCCTAGAAAAGCACCCCTCAAGCAAGGAAAGAAGAGAGGCTACCTCTATCATTTCCCTACTAGTCAAATTACAGCGGAACCCAAAATAAAAAGACACAAGATTCTCAGAACCAACCAAAAGATCTGTAATCGCACAATTTTTGGAAGTGGATAAATGATAAAGATGTGTAAATAAAGAACAAAGGGAATTCTCCCCCACCTGTTGATCCTCCTAGAAGTAATTTTCCTTACCATTCCCCACAAAACGACGTGTAAGATAGTAGTGAGCTCGAAAGAGATATCCTTCCAAGGATTTCAGAATGTGCCTTTAACCCCTTTCGTCGTCCACTCAAAGGGAAGGGAGCTATGATTGCTCACAACAATCCTATGCCATAAAGAATCAGGTTAGAGAGAAAAGTGCCAAAGCCACTTTGCCAACAACG

mRNA sequence

ATGGAGGAAAGAGCTCCACACAGCTCGAGCATACTGGCAATCCCAAAAATGATGATCAAGATCTTCCTCTGCCTTTTGAAAAAGCATGCAACAAAAAGGCCCAAGAAGCGAAGTTCTCCTCCTAACAAGCTTGTCGATGGTATTAACCCGACCAAGCAACACTTGCCAAATGAAGAACCTAACTTTCTTAGGAACTTTAATCCTCCATACCACATAAAAAACAGACTCCTTAGGGGAATCCAACAACAAACTAAACAAGGATTTATAAGTATAACCCCGATTAGGATTAGGGTTCCAAACACGAGCATCGCTTCTCCCCTCCCTAGAAAAGCACCCCTCAAGCAAGGAAAGAAGAGAGGCTACCTCTATCATTTCCCTACTAGTCAAATTACAGCGGAACCCAAAATAAAAAGACACAAGATTCTCAGAACCAACCAAAAGATCTGTAATCGCACAATTTTTGGAAGTGGATAA

Coding sequence (CDS)

ATGGAGGAAAGAGCTCCACACAGCTCGAGCATACTGGCAATCCCAAAAATGATGATCAAGATCTTCCTCTGCCTTTTGAAAAAGCATGCAACAAAAAGGCCCAAGAAGCGAAGTTCTCCTCCTAACAAGCTTGTCGATGGTATTAACCCGACCAAGCAACACTTGCCAAATGAAGAACCTAACTTTCTTAGGAACTTTAATCCTCCATACCACATAAAAAACAGACTCCTTAGGGGAATCCAACAACAAACTAAACAAGGATTTATAAGTATAACCCCGATTAGGATTAGGGTTCCAAACACGAGCATCGCTTCTCCCCTCCCTAGAAAAGCACCCCTCAAGCAAGGAAAGAAGAGAGGCTACCTCTATCATTTCCCTACTAGTCAAATTACAGCGGAACCCAAAATAAAAAGACACAAGATTCTCAGAACCAACCAAAAGATCTGTAATCGCACAATTTTTGGAAGTGGATAA
Homology
[Close]
BLAST of CSPI04G16800 vs. NCBI nr
Match: gi|659074561|ref|XP_008437670.1| (PREDICTED: uncharacterized protein LOC103483010 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-07
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1 

Query: 18  MIKIFLCLLKKHATKRPKKRSSPPNKLVDGINPTKQHLPNEEPNFLRNFNPPYHIKNRLL 77
           +IK+FLCL  K+  +RP K+ SP NK ++ +  +K +LP++E  FL N N P +IK RL 
Sbjct: 103 VIKVFLCLPTKNIAERPNKQGSPTNKRINSVRTSKLNLPDKEAQFLWNLNAPNNIKIRLS 162

Query: 78  --RGIQQQTKQG 88
             +GI+QQ ++G
Sbjct: 163 KGKGIEQQKEKG 174

The following BLAST results are available for this feature:
BLAST of CSPI04G16800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G16800 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI04G16800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G16800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074561|ref|XP_008437670.1|6.3e-0744.44PREDICTED: uncharacterized protein LOC103483010 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G16800.1CSPI04G16800.1mRNA