CSPI04G14880 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G14880
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	cofactor assembly, complex C (B6F)
Location	Chr4 : 12454427 .. 12454648 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTTGGCCGACCTCGACCCGGAAACAGCAAAGCTTGTAATCAACTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCTTGTGGGGAAGTTTCCATATGTCATAGCTTATGCCCCCATTGAACCACTTCTAATTGCAACAAGGAAGGTGATTCCTCCTCTAGCGGAGTTGACGTAA

mRNA sequence

ATGACCTTGGCCGACCTCGACCCGGAAACAGCAAAGCTTGTAATCAACTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCTTGTGGGGAAGTTTCCATATGTCATAGCTTATGCCCCCATTGAACCACTTCTAATTGCAACAAGGAAGGTGATTCCTCCTCTAGCGGAGTTGACGTAA

Coding sequence (CDS)

ATGACCTTGGCCGACCTCGACCCGGAAACAGCAAAGCTTGTAATCAACTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCTTGTGGGGAAGTTTCCATATGTCATAGCTTATGCCCCCATTGAACCACTTCTAATTGCAACAAGGAAGGTGATTCCTCCTCTAGCGGAGTTGACGTAA

Homology

[Close]

BLAST of CSPI04G14880 vs. Swiss-Prot
Match: CCB3_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidopsis thaliana GN=CCB3 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.6e-23
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           ++LADLDP TAKL I  LGP+LS F FLFI RIVMSWYPKL V KFPYV+AYAP EP+L+
Sbjct: 69  ISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSWYPKLPVDKFPYVLAYAPTEPILV 128

Query: 61  ATRKVIPPLA 71
            TRKVIPPLA
Sbjct: 129 QTRKVIPPLA 138

[Close]

BLAST of CSPI04G14880 vs. TrEMBL
Match: A0A0A0K9A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398190 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.8e-26
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           MTLADLDP TAKL I+FLGPSLSVFSFLFIARIVMSWYPKL VGKFPYVIAYAP EPLL+
Sbjct: 106 MTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLV 165

Query: 61  ATRKVIPPL 70
           ATRKVIPPL
Sbjct: 166 ATRKVIPPL 174

[Close]

BLAST of CSPI04G14880 vs. TrEMBL
Match: V7BCK6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G086000g PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-23
Identity = 60/70 (85.71%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           + LADLDP TAKLVI FLGP LSVF FLFI RIVMSWYPKL VGKFPYVIAYAP EPLLI
Sbjct: 136 LVLADLDPATAKLVIGFLGPFLSVFGFLFILRIVMSWYPKLPVGKFPYVIAYAPTEPLLI 195

Query: 61  ATRKVIPPLA 71
            TRKVIPPLA
Sbjct: 196 PTRKVIPPLA 205

[Close]

BLAST of CSPI04G14880 vs. TrEMBL
Match: I1NH75_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G172300 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-23
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           + LADLDP+TAKL I FLGP LSVF FLFI RIVMSWYPKL VGKFPYVIAYAP EPLLI
Sbjct: 114 LVLADLDPDTAKLAIGFLGPFLSVFGFLFILRIVMSWYPKLPVGKFPYVIAYAPTEPLLI 173

Query: 61  ATRKVIPPLA 71
            TRKVIPPLA
Sbjct: 174 PTRKVIPPLA 183

[Close]

BLAST of CSPI04G14880 vs. TrEMBL
Match: I1NH76_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G172300 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-23
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           + LADLDP+TAKL I FLGP LSVF FLFI RIVMSWYPKL VGKFPYVIAYAP EPLLI
Sbjct: 58  LVLADLDPDTAKLAIGFLGPFLSVFGFLFILRIVMSWYPKLPVGKFPYVIAYAPTEPLLI 117

Query: 61  ATRKVIPPLA 71
            TRKVIPPLA
Sbjct: 118 PTRKVIPPLA 127

[Close]

BLAST of CSPI04G14880 vs. TrEMBL
Match: A0A0B2NZB4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_000440 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-23
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           + LADLDP+TAKL I FLGP LSVF FLFI RIVMSWYPKL VGKFPYVIAYAP EPLLI
Sbjct: 114 LVLADLDPDTAKLAIGFLGPFLSVFGFLFILRIVMSWYPKLPVGKFPYVIAYAPTEPLLI 173

Query: 61  ATRKVIPPLA 71
            TRKVIPPLA
Sbjct: 174 PTRKVIPPLA 183

[Close]

BLAST of CSPI04G14880 vs. TAIR10
Match: AT5G36120.1 (AT5G36120.1 cofactor assembly, complex C (B6F))

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-24
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           ++LADLDP TAKL I  LGP+LS F FLFI RIVMSWYPKL V KFPYV+AYAP EP+L+
Sbjct: 69  ISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSWYPKLPVDKFPYVLAYAPTEPILV 128

Query: 61  ATRKVIPPLA 71
            TRKVIPPLA
Sbjct: 129 QTRKVIPPLA 138

[Close]

BLAST of CSPI04G14880 vs. NCBI nr
Match: gi|659101327|ref|XP_008451549.1| (PREDICTED: uncharacterized protein LOC103492796 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           MTLADLDP TAKL I+FLGPSLSVFSFLFIARIVMSWYPKL VGKFPYVIAYAP EPLLI
Sbjct: 88  MTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLI 147

Query: 61  ATRKVIPPL 70
           ATRKVIPPL
Sbjct: 148 ATRKVIPPL 156

[Close]

BLAST of CSPI04G14880 vs. NCBI nr
Match: gi|778728100|ref|XP_004136016.2| (PREDICTED: uncharacterized protein LOC101206020 isoform X1 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           MTLADLDP TAKL I+FLGPSLSVFSFLFIARIVMSWYPKL VGKFPYVIAYAP EPLL+
Sbjct: 106 MTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLV 165

Query: 61  ATRKVIPPL 70
           ATRKVIPPL
Sbjct: 166 ATRKVIPPL 174

[Close]

BLAST of CSPI04G14880 vs. NCBI nr
Match: gi|778728103|ref|XP_004136017.2| (PREDICTED: uncharacterized protein LOC101206020 isoform X2 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           MTLADLDP TAKL I+FLGPSLSVFSFLFIARIVMSWYPKL VGKFPYVIAYAP EPLL+
Sbjct: 87  MTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLV 146

Query: 61  ATRKVIPPL 70
           ATRKVIPPL
Sbjct: 147 ATRKVIPPL 155

[Close]

BLAST of CSPI04G14880 vs. NCBI nr
Match: gi|593685874|ref|XP_007143608.1| (hypothetical protein PHAVU_007G086000g [Phaseolus vulgaris])

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-23
Identity = 60/70 (85.71%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           + LADLDP TAKLVI FLGP LSVF FLFI RIVMSWYPKL VGKFPYVIAYAP EPLLI
Sbjct: 136 LVLADLDPATAKLVIGFLGPFLSVFGFLFILRIVMSWYPKLPVGKFPYVIAYAPTEPLLI 195

Query: 61  ATRKVIPPLA 71
            TRKVIPPLA
Sbjct: 196 PTRKVIPPLA 205

[Close]

BLAST of CSPI04G14880 vs. NCBI nr
Match: gi|947042027|gb|KRG91751.1| (hypothetical protein GLYMA_20G172300 [Glycine max])

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-23
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1   MTLADLDPETAKLVINFLGPSLSVFSFLFIARIVMSWYPKLLVGKFPYVIAYAPIEPLLI 60
           + LADLDP+TAKL I FLGP LSVF FLFI RIVMSWYPKL VGKFPYVIAYAP EPLLI
Sbjct: 58  LVLADLDPDTAKLAIGFLGPFLSVFGFLFILRIVMSWYPKLPVGKFPYVIAYAPTEPLLI 117

Query: 61  ATRKVIPPLA 71
            TRKVIPPLA
Sbjct: 118 PTRKVIPPLA 127

The following BLAST results are available for this feature:

BLAST of CSPI04G14880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCB3_ARATH	8.6e-23	75.71	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidop...	[more]

BLAST of CSPI04G14880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9A7_CUCSA	9.8e-26	91.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398190 PE=4 SV=1	[more]
V7BCK6_PHAVU	1.6e-23	85.71	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G086000g PE=4 SV=1	[more]
I1NH75_SOYBN	2.1e-23	84.29	Uncharacterized protein OS=Glycine max GN=GLYMA_20G172300 PE=4 SV=1	[more]
I1NH76_SOYBN	2.1e-23	84.29	Uncharacterized protein OS=Glycine max GN=GLYMA_20G172300 PE=4 SV=1	[more]
A0A0B2NZB4_GLYSO	2.1e-23	84.29	Uncharacterized protein OS=Glycine soja GN=glysoja_000440 PE=4 SV=1	[more]

BLAST of CSPI04G14880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G36120.1	4.8e-24	75.71	cofactor assembly, complex C (B6F)	[more]

BLAST of CSPI04G14880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101327\|ref\|XP_008451549.1\|	1.1e-25	92.75	PREDICTED: uncharacterized protein LOC103492796 [Cucumis melo]	[more]
gi\|778728100\|ref\|XP_004136016.2\|	1.4e-25	91.30	PREDICTED: uncharacterized protein LOC101206020 isoform X1 [Cucumis sativus]	[more]
gi\|778728103\|ref\|XP_004136017.2\|	1.4e-25	91.30	PREDICTED: uncharacterized protein LOC101206020 isoform X2 [Cucumis sativus]	[more]
gi\|593685874\|ref\|XP_007143608.1\|	2.3e-23	85.71	hypothetical protein PHAVU_007G086000g [Phaseolus vulgaris]	[more]
gi\|947042027\|gb\|KRG91751.1\|	2.9e-23	84.29	hypothetical protein GLYMA_20G172300 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003425	CCB3/YggT

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0044723	single-organism carbohydrate metabolic process
biological_process	GO:0009893	positive regulation of metabolic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0016043	cellular component organization
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0044767	single-organism developmental process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0044763	single-organism cellular process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G14880.1	CSPI04G14880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 22..68 score: 1.
None	No IPR available	PANTHER	PTHR33219	FAMILY NOT NAMED	coord: 1..69 score: 4.8
None	No IPR available	PANTHER	PTHR33219:SF1	COFACTOR ASSEMBLY, COMPLEX C (B6F)	coord: 1..69 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G14880	CsaV3_4G025230	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G14880	Cucsa.066410	Cucumber (Gy14) v1	cgycpiB055
CSPI04G14880	CsGy4G014350	Cucumber (Gy14) v2	cgybcpiB170

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G14880	Wax gourd	cpiwgoB359
CSPI04G14880	Wax gourd	cpiwgoB395
CSPI04G14880	Wild cucumber (PI 183967)	cpicpiB107
CSPI04G14880	Wild cucumber (PI 183967)	cpicpiB153
CSPI04G14880	Cucumber (Gy14) v1	cgycpiB257
CSPI04G14880	Cucumber (Gy14) v1	cgycpiB279
CSPI04G14880	Cucurbita maxima (Rimu)	cmacpiB266
CSPI04G14880	Cucurbita maxima (Rimu)	cmacpiB677
CSPI04G14880	Cucurbita maxima (Rimu)	cmacpiB876
CSPI04G14880	Cucurbita moschata (Rifu)	cmocpiB254
CSPI04G14880	Cucurbita moschata (Rifu)	cmocpiB669
CSPI04G14880	Cucurbita moschata (Rifu)	cmocpiB856
CSPI04G14880	Cucumber (Chinese Long) v2	cpicuB178
CSPI04G14880	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G14880	Cucumber (Chinese Long) v2	cpicuB191
CSPI04G14880	Melon (DHL92) v3.5.1	cpimeB264
CSPI04G14880	Melon (DHL92) v3.5.1	cpimeB288
CSPI04G14880	Melon (DHL92) v3.5.1	cpimeB322
CSPI04G14880	Watermelon (Charleston Gray)	cpiwcgB282
CSPI04G14880	Watermelon (Charleston Gray)	cpiwcgB316
CSPI04G14880	Watermelon (97103) v1	cpiwmB292
CSPI04G14880	Watermelon (97103) v1	cpiwmB345
CSPI04G14880	Cucurbita pepo (Zucchini)	cpecpiB065
CSPI04G14880	Cucurbita pepo (Zucchini)	cpecpiB497
CSPI04G14880	Cucurbita pepo (Zucchini)	cpecpiB621
CSPI04G14880	Bottle gourd (USVL1VR-Ls)	cpilsiB247
CSPI04G14880	Bottle gourd (USVL1VR-Ls)	cpilsiB255
CSPI04G14880	Bottle gourd (USVL1VR-Ls)	cpilsiB276
CSPI04G14880	Melon (DHL92) v3.6.1	cpimedB260
CSPI04G14880	Melon (DHL92) v3.6.1	cpimedB282
CSPI04G14880	Melon (DHL92) v3.6.1	cpimedB313
CSPI04G14880	Cucumber (Gy14) v2	cgybcpiB124
CSPI04G14880	Cucumber (Gy14) v2	cgybcpiB220
CSPI04G14880	Silver-seed gourd	carcpiB0613
CSPI04G14880	Silver-seed gourd	carcpiB0970
CSPI04G14880	Silver-seed gourd	carcpiB1037
CSPI04G14880	Cucumber (Chinese Long) v3	cpicucB209
CSPI04G14880	Cucumber (Chinese Long) v3	cpicucB232
CSPI04G14880	Watermelon (97103) v2	cpiwmbB280
CSPI04G14880	Watermelon (97103) v2	cpiwmbB307