CSPI04G13930 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G13930
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Chaperonin-like RbcX protein
Location	Chr4 : 11832506 .. 11834744 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGAATGTTGCATGGATGATTTAAGACCTCAGAAAAATGTTTGGTTTACGTTGGCAGTTGACATGCATTTTCTTTTTGTACCAAAGAAAAAAGGAAATTAACGACAAACTTCCAACAATATGAAACCTTTCTTTCATCCTCTTTCTTGTACAATTCTAAATTGAATTCTCAAAGTTTGATCAGTTTCTTACGATAGCTGAATCTTTGACCCAATCTCCTATTCTCTCCCACTTTTCCTTTATATTCACTTCTTTCTCTTTCAATTCCTTTATTCCCACTTCATATATCCTCCTTCTCTCAACGGTTGGCTTGTGATCTTGGAATCTTTTTTTCCAAAATGGTGGGAGCCTTGTTTGTTGTTGGTGCACCTGTGGTCGACTCCCTGCCGCCGTGTTTGTCTTTCGACTCGTCGCCGGTTACCAATATGAGTCTTAGAAGTGGTGGGGATTTGGTTTTGCAAAGGAAATCCAAGGCTAAGAGTTATTTGACCGTGTCTAAATCGGTGGACTTGAGAAGTTCGTTTGTCAATCTTGGTGACGAGTGGCAGCTCTCGGCCGGTGGTGGCCGTCAGAGTAAGAGGAACCAACGAAGGAATCGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGGTAGGGATATTATATCACTCTCTTCTTCAATGCAAAATGCTTTGATCTGTCTTCTAATTTTTGGTTTAATTTAAAAAAAAATAAACGAAATGGTTACCAAACGGCATGAATTGTTATCAACTACTTGTCTCTTCTCCTGCTTCCTGAATGATCAATGTTCTTGGCACTTGGATTCTGCATTTAAAAAGGGAAGAAAAAACTGTTTAAGCTTACCAGAGGCTTTCTATTTGCAGCAAATACAGAATTATTTCACATACAAAGCTGTGAAGACAGTTTTGAATCAGCTTTATGAGATGAACCCAACACAGTACAGATGGTTTTATAAGTAAGTGAAGCCTTTTGCTTTAGTTTTTAAGAACTCATTATGACTGCCAATGTAAATGCTTATTCTGTGGAAATCAAAATAGTGTTTTTAGAACATTATTTCATTTCCCCATCTAATCTTGCATTTCACCTTTTTCTACATCAACAGCTTTGTTGTAAATCACAAGCCTGGGGAAGGGAAGCGTTTCATTCGAACTCTTGTAAAGGTAATATACCAATCTCTAAAAGATTGTAAACCTAAACCTAAACCTAAACATAACTCACTTGATTAAGACACAGTATCATCAACCAGCACATTAGGGGTTCAAATCCCTATGCATTCACGTGTTGAACTCAAAAGGGAAGGAAAAAGAAGTCTAAAGAGTCTATTTGAATTACATGAACGATATGTAAATGATTGAGTACTGAAACAAATTGGATGATTACCAGGAGAAGCAAGATTTGGCTGAGAGGGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGGTAAGAACAAACTTGGTATTTTGAGGGGTTTTTATTATTATTATTATTATATTGAATTGTGATTTGGTGTTGTTGGATAGAAATGTGATCATGCTGAAATATACAAAGGGATATCTGATGAGAACTTGGAGTTGATGCGAGAGAGGCTAATGGAGACTGTGATATGGCCTTCCGACGACTAGAGCTTTTAGGAGATTGGCAGACTAGGAGTTAGAAGATTTTTTTATCTTATTTATTTTCCTTTAGTGTCGACCAATCTGGTCCTGTTCCTAATTAGTTGTCATTCACATTCATATTATTTTCCCCCAACTAATAACAATTCTTACATCCACTACTACAAAAAAAATCAATGTAAATACTTTCAACATCTTATACCATGTTAAAAGTATCAATGTCATTGAATATGTTTCTATAAACAAAAGGCATTTTGGAGATTAGTCCAACCGTTTCATATCTGTTGTAATTGCAGTAATCAAACCTCACAGGATATCTCATTTTGTGCTAATCTAGGTACGATTCTATTGGTTTAGGCCTAAACCTTTGACTAAAAGGTCATAGGTTCGAAAATCACGAATCCCATATGTTGTTGAACTCAAAAACATATAATAATGTTTCACTTTCTGTGTCAACACCTTTCCAGTTGAAAGAGTAATAATTTCTCAATTTCTAAAGCAAAATCACGAAGGTGACATTTACTATCTTGAAGAGAAATTTATGCAGATCCACATCCACCACCATCATGAAGATGATAAAGGCGG

mRNA sequence

ATGGTGGGAGCCTTGTTTGTTGTTGGTGCACCTGTGGTCGACTCCCTGCCGCCGTGTTTGTCTTTCGACTCGTCGCCGGTTACCAATATGAGTCTTAGAAGTGGTGGGGATTTGGTTTTGCAAAGGAAATCCAAGGCTAAGAGTTATTTGACCGTGTCTAAATCGGTGGACTTGAGAAGTTCGTTTGTCAATCTTGGTGACGAGTGGCAGCTCTCGGCCGGTGGTGGCCGTCAGAGTAAGAGGAACCAACGAAGGAATCGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGCAAATACAGAATTATTTCACATACAAAGCTGTGAAGACAGTTTTGAATCAGCTTTATGAGATGAACCCAACACAGTACAGATGGTTTTATAACTTTGTTGTAAATCACAAGCCTGGGGAAGGGAAGCGTTTCATTCGAACTCTTGTAAAGGAGAAGCAAGATTTGGCTGAGAGGGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGGGATATCTGATGAGAACTTGGAGTTGATGCGAGAGAGGCTAATGGAGACTGTGATATGGCCTTCCGACGACTAG

Coding sequence (CDS)

ATGGTGGGAGCCTTGTTTGTTGTTGGTGCACCTGTGGTCGACTCCCTGCCGCCGTGTTTGTCTTTCGACTCGTCGCCGGTTACCAATATGAGTCTTAGAAGTGGTGGGGATTTGGTTTTGCAAAGGAAATCCAAGGCTAAGAGTTATTTGACCGTGTCTAAATCGGTGGACTTGAGAAGTTCGTTTGTCAATCTTGGTGACGAGTGGCAGCTCTCGGCCGGTGGTGGCCGTCAGAGTAAGAGGAACCAACGAAGGAATCGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGCAAATACAGAATTATTTCACATACAAAGCTGTGAAGACAGTTTTGAATCAGCTTTATGAGATGAACCCAACACAGTACAGATGGTTTTATAACTTTGTTGTAAATCACAAGCCTGGGGAAGGGAAGCGTTTCATTCGAACTCTTGTAAAGGAGAAGCAAGATTTGGCTGAGAGGGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGGGATATCTGATGAGAACTTGGAGTTGATGCGAGAGAGGCTAATGGAGACTGTGATATGGCCTTCCGACGACTAG

Homology

[Close]

BLAST of CSPI04G13930 vs. TrEMBL
Match: A0A0A0KX19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291920 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 2.4e-117
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1


Query: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60
           MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60

Query: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYKGISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CSPI04G13930 vs. TrEMBL
Match: B9GF05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26540g PE=4 SV=2)

HSP 1 Score: 292.0 bits (746), Expect = 6.0e-76
Identity = 148/218 (67.89%), Postives = 174/218 (79.82%), Query Frame = 1


Query: 1   MVGALFVVGAPVVDS-LPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60
           MVGAL V+G+ VVD    PCL  DS P TN+ L++ GDL LQR S  +  LT   S++L 
Sbjct: 1   MVGALSVMGSSVVDPHTSPCLCLDSLPTTNIGLKNSGDLALQRSSIKRKQLTRPGSLELG 60

Query: 61  SSFVNLGDEWQLSA----GGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFT 120
           SSFV+   +W+LS+    G   +S R QR++R LV+V+E AGQYEDSF+DVK Q+ NYFT
Sbjct: 61  SSFVDSWHDWRLSSKAISGIVSKSSRKQRKDRGLVIVSELAGQYEDSFEDVKTQLLNYFT 120

Query: 121 YKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLY 180
           YKAV+TVLNQLYEMNPTQY WFYNFV ++KPG+GKRF+R LVKEKQDLAERVM+TRLHLY
Sbjct: 121 YKAVRTVLNQLYEMNPTQYTWFYNFVAHNKPGDGKRFLRALVKEKQDLAERVMVTRLHLY 180

Query: 181 NKWVKKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
            KW+KKCDHAEIYK ISDENLELMRERL ETVIWPSDD
Sbjct: 181 GKWIKKCDHAEIYKEISDENLELMRERLKETVIWPSDD 218

[Close]

BLAST of CSPI04G13930 vs. TrEMBL
Match: A0A061GTI0_THECC (Chaperonin-like RbcX protein isoform 1 OS=Theobroma cacao GN=TCM_040706 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.3e-74
Identity = 145/218 (66.51%), Postives = 172/218 (78.90%), Query Frame = 1


Query: 1   MVGALFVVGAPVVDS-LPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60
           MVGAL V+G+ V+DS   PCL  D+ P TNM+L+ GG+LVLQR S  + ++    S++L 
Sbjct: 1   MVGALSVMGSSVIDSHTGPCLCLDALPSTNMNLKGGGELVLQRNSMKRKHVARPGSLELG 60

Query: 61  SSFVNLGDEWQLSA----GGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFT 120
           SSFV+   +W+LS     G   +  R QR++RRLVVVNE AGQYEDSF+DVK Q+ NYFT
Sbjct: 61  SSFVDSWQDWRLSGKMIPGIVNRCSRKQRKDRRLVVVNEVAGQYEDSFEDVKTQLLNYFT 120

Query: 121 YKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLY 180
           YKAV+TVLNQLYEMNP QY WFY FV  +KP EGKRFIR L KE+Q+LAERVMITRLHLY
Sbjct: 121 YKAVRTVLNQLYEMNPPQYTWFYQFVATNKPSEGKRFIRILGKERQELAERVMITRLHLY 180

Query: 181 NKWVKKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
            KWVKKCDHA+IYK ISDENLELMRERLM+TV+WPSDD
Sbjct: 181 GKWVKKCDHAQIYKEISDENLELMRERLMDTVVWPSDD 218

[Close]

BLAST of CSPI04G13930 vs. TrEMBL
Match: A0A0A0LXJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613600 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 9.6e-74
Identity = 144/215 (66.98%), Postives = 174/215 (80.93%), Query Frame = 1


Query: 1   MVGALFVVGAPVVDS-LPPCLSFDSSPVTNMSLRSGGDLVLQRK-SKAKSYLTVSKSVDL 60
           MVGAL +VG+ VVDS   PCL  D+ P T+++L+S GD V+++K SK +  L   K +DL
Sbjct: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60

Query: 61  RSSFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKA 120
            SSFV+ G EW LS     +S R Q +NRRL+VV+E  GQYED+FDDVKMQ+ NYFTYKA
Sbjct: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKW 180
           V+TV+NQLYEMNP QYRW Y+FV+N+KP +GK FIR LVKE+QDLAERVMITRLHLY KW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           VKKC+HAEIY+ ISDEN+ELMRERLM+TVIWPSDD
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDD 215

[Close]

BLAST of CSPI04G13930 vs. TrEMBL
Match: B9HNW9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05790g PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.3e-73
Identity = 148/217 (68.20%), Postives = 168/217 (77.42%), Query Frame = 1


Query: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60
           MVGAL VV         PCL  D+ P TN+ L+S GDLVLQR S  +  LT   S++L S
Sbjct: 1   MVGALSVVDPHT----SPCLCLDALPTTNIGLKSSGDLVLQRSSMKRKQLTRPGSLELGS 60

Query: 61  SFVNLGDEWQLSA----GGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTY 120
           SFV+   +W+LS+    G   +S R QR++R LVVVNE  GQYEDSF+DVKMQ+ NYFTY
Sbjct: 61  SFVDSWHDWRLSSKAISGIVSKSSRKQRKDRGLVVVNELGGQYEDSFEDVKMQLINYFTY 120

Query: 121 KAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYN 180
           KAV+TVLNQLYEMNPTQY W YNFV  +KPG+GKRFIR+L KEKQDLAERVM+TRLHLY 
Sbjct: 121 KAVRTVLNQLYEMNPTQYTWLYNFVAQNKPGDGKRFIRSLGKEKQDLAERVMVTRLHLYG 180

Query: 181 KWVKKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KWVKKCDHAEIYK ISDENLELMRERLMETV WPSDD
Sbjct: 181 KWVKKCDHAEIYKEISDENLELMRERLMETVKWPSDD 213

[Close]

BLAST of CSPI04G13930 vs. TAIR10
Match: AT5G19855.1 (AT5G19855.1 Chaperonin-like RbcX protein)

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-57
Identity = 117/215 (54.42%), Postives = 151/215 (70.23%), Query Frame = 1


Query: 1   MVGALFVVGAPVVDSLP-PCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60
           MV A FVVG+PV+DS   PCL  D+     +              + K  L  +++++L 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTI--------------RRKKILGKARNLELG 60

Query: 61  SSFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNE-FAGQYEDSFDDVKMQIQNYFTYKA 120
           SSF      ++LS    R S+   R++++L++VNE  AG Y+D+F DV+ QI NYFTYKA
Sbjct: 61  SSFTGSRIVFRLSPK--RVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKA 120

Query: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKW 180
           V+TVL+QLYEMNP QY WFYN ++ ++P +GKRF+R L KE Q+LAERVMITRLHLY KW
Sbjct: 121 VRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKW 180

Query: 181 VKKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           +KKCDH +IY+ ISDENL LMRERLMETVIWPSDD
Sbjct: 181 IKKCDHGKIYQEISDENLALMRERLMETVIWPSDD 199

[Close]

BLAST of CSPI04G13930 vs. NCBI nr
Match: gi|449448719|ref|XP_004142113.1| (PREDICTED: uncharacterized protein LOC101203881 [Cucumis sativus])

HSP 1 Score: 429.5 bits (1103), Expect = 3.5e-117
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1


Query: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60
           MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60

Query: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYKGISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CSPI04G13930 vs. NCBI nr
Match: gi|659097603|ref|XP_008449714.1| (PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo])

HSP 1 Score: 411.4 bits (1056), Expect = 9.8e-112
Identity = 203/213 (95.31%), Postives = 206/213 (96.71%), Query Frame = 1


Query: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60
           MVGALFVVGAPV+DS PPC SFDSSPVTNMSLRSGGDLVLQRKSK KSY TVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVN GDEWQLSAGG RQS+RNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CSPI04G13930 vs. NCBI nr
Match: gi|566151127|ref|XP_002298402.2| (hypothetical protein POPTR_0001s26540g [Populus trichocarpa])

HSP 1 Score: 292.0 bits (746), Expect = 8.7e-76
Identity = 148/218 (67.89%), Postives = 174/218 (79.82%), Query Frame = 1


Query: 1   MVGALFVVGAPVVDS-LPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60
           MVGAL V+G+ VVD    PCL  DS P TN+ L++ GDL LQR S  +  LT   S++L 
Sbjct: 1   MVGALSVMGSSVVDPHTSPCLCLDSLPTTNIGLKNSGDLALQRSSIKRKQLTRPGSLELG 60

Query: 61  SSFVNLGDEWQLSA----GGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFT 120
           SSFV+   +W+LS+    G   +S R QR++R LV+V+E AGQYEDSF+DVK Q+ NYFT
Sbjct: 61  SSFVDSWHDWRLSSKAISGIVSKSSRKQRKDRGLVIVSELAGQYEDSFEDVKTQLLNYFT 120

Query: 121 YKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLY 180
           YKAV+TVLNQLYEMNPTQY WFYNFV ++KPG+GKRF+R LVKEKQDLAERVM+TRLHLY
Sbjct: 121 YKAVRTVLNQLYEMNPTQYTWFYNFVAHNKPGDGKRFLRALVKEKQDLAERVMVTRLHLY 180

Query: 181 NKWVKKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
            KW+KKCDHAEIYK ISDENLELMRERL ETVIWPSDD
Sbjct: 181 GKWIKKCDHAEIYKEISDENLELMRERLKETVIWPSDD 218

[Close]

BLAST of CSPI04G13930 vs. NCBI nr
Match: gi|1009118521|ref|XP_015875902.1| (PREDICTED: uncharacterized protein LOC107412612 [Ziziphus jujuba])

HSP 1 Score: 291.6 bits (745), Expect = 1.1e-75
Identity = 151/222 (68.02%), Postives = 177/222 (79.73%), Query Frame = 1


Query: 1   MVGALFVVGAPVVDSLP-PCLSFDSSPVTNMSLRSGGDLVLQRKSKA----KSYLTVSKS 60
           MVGAL VVG+ VVDS   PCL  D+ P TNM+L+SGGDLVLQR   +    K  +  + S
Sbjct: 1   MVGALSVVGSSVVDSHSCPCLCLDALPTTNMNLKSGGDLVLQRNYNSSMGKKHIVKPAGS 60

Query: 61  VDLRSSFVNLGDEWQLSAGG----GRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQ 120
           ++L SSF++ G + +LS         +S R QR+NRRL +VNEFAGQYEDSFDDVK QI 
Sbjct: 61  LELSSSFIDSGHDRRLSVKALPRIASRSLRKQRKNRRLKIVNEFAGQYEDSFDDVKTQIL 120

Query: 121 NYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITR 180
           NYFTYKAV+TV+NQLYEMNPTQYRWFY FVV++KPG+GKRF+RTL KEK +LAERVM+TR
Sbjct: 121 NYFTYKAVRTVMNQLYEMNPTQYRWFYEFVVSNKPGDGKRFLRTLGKEKHELAERVMVTR 180

Query: 181 LHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
           LHLY KWVKKCDHA IYK ISDENLELMRERL++TVIWPSDD
Sbjct: 181 LHLYGKWVKKCDHAAIYKEISDENLELMRERLIQTVIWPSDD 222

[Close]

BLAST of CSPI04G13930 vs. NCBI nr
Match: gi|743904143|ref|XP_011045433.1| (PREDICTED: uncharacterized protein LOC105140338 [Populus euphratica])

HSP 1 Score: 287.3 bits (734), Expect = 2.1e-74
Identity = 145/218 (66.51%), Postives = 173/218 (79.36%), Query Frame = 1


Query: 1   MVGALFVVGAPVVDS-LPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60
           MVGAL V+G+ VVD    PCL  DS P TN+ L++ G+L LQR S  +  LT   S++L 
Sbjct: 1   MVGALSVMGSSVVDPHTSPCLCLDSLPTTNIGLKNSGELALQRSSMKRKQLTRPGSLELG 60

Query: 61  SSFVNLGDEWQLSA----GGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFT 120
           SSFV+   +W+LS+    G   +S R QR++R LV+V+E AGQYEDSF+DVK Q+ NYFT
Sbjct: 61  SSFVDSWHDWRLSSKAISGIVSKSSRKQRKDRGLVIVSELAGQYEDSFEDVKAQLLNYFT 120

Query: 121 YKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLY 180
           YKAV+TVLNQLYEMNPTQY WFYNFV ++KPG+GKRF+R L KEKQDLAERVM+TRLHLY
Sbjct: 121 YKAVRTVLNQLYEMNPTQYTWFYNFVAHNKPGDGKRFLRALGKEKQDLAERVMVTRLHLY 180

Query: 181 NKWVKKCDHAEIYKGISDENLELMRERLMETVIWPSDD 214
            KW+KKCDHAEIYK ISD+NLELMRERL ETVIWPSDD
Sbjct: 181 GKWIKKCDHAEIYKEISDDNLELMRERLKETVIWPSDD 218

The following BLAST results are available for this feature:

BLAST of CSPI04G13930 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G13930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX19_CUCSA	2.4e-117	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291920 PE=4 SV=1	[more]
B9GF05_POPTR	6.0e-76	67.89	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26540g PE=4 SV=2	[more]
A0A061GTI0_THECC	3.3e-74	66.51	Chaperonin-like RbcX protein isoform 1 OS=Theobroma cacao GN=TCM_040706 PE=4 SV=...	[more]
A0A0A0LXJ9_CUCSA	9.6e-74	66.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613600 PE=4 SV=1	[more]
B9HNW9_POPTR	1.3e-73	68.20	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05790g PE=4 SV=1	[more]

BLAST of CSPI04G13930 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19855.1	1.5e-57	54.42	Chaperonin-like RbcX protein	[more]

BLAST of CSPI04G13930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448719\|ref\|XP_004142113.1\|	3.5e-117	100.00	PREDICTED: uncharacterized protein LOC101203881 [Cucumis sativus]	[more]
gi\|659097603\|ref\|XP_008449714.1\|	9.8e-112	95.31	PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo]	[more]
gi\|566151127\|ref\|XP_002298402.2\|	8.7e-76	67.89	hypothetical protein POPTR_0001s26540g [Populus trichocarpa]	[more]
gi\|1009118521\|ref\|XP_015875902.1\|	1.1e-75	68.02	PREDICTED: uncharacterized protein LOC107412612 [Ziziphus jujuba]	[more]
gi\|743904143\|ref\|XP_011045433.1\|	2.1e-74	66.51	PREDICTED: uncharacterized protein LOC105140338 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003435	Chaperonin_RcbX

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0061077	chaperone-mediated protein folding
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0044183	protein binding involved in protein folding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G13930.1	CSPI04G13930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 108..206 score: 2.3
None	No IPR available	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 52..213 score: 1.4E-111coord: 1..29 score: 1.4E
None	No IPR available	PANTHER	PTHR33791:SF4	CHAPERONIN-LIKE RBCX PROTEIN	coord: 52..213 score: 1.4E-111coord: 1..29 score: 1.4E
None	No IPR available	unknown	SSF158615	RbcX-like	coord: 98..213 score: 2.35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G13930	Cla008548	Watermelon (97103) v1	cpiwmB353
CSPI04G13930	Csa4G291920	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G13930	MELO3C014593	Melon (DHL92) v3.5.1	cpimeB289
CSPI04G13930	Lsi10G010640	Bottle gourd (USVL1VR-Ls)	cpilsiB245
CSPI04G13930	MELO3C014593.2	Melon (DHL92) v3.6.1	cpimedB283
CSPI04G13930	CsaV3_4G024270	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G13930	Cla97C02G049310	Watermelon (97103) v2	cpiwmbB294
CSPI04G13930	Bhi10G000232	Wax gourd	cpiwgoB394
CSPI04G13930	Cucsa.065580	Cucumber (Gy14) v1	cgycpiB055
CSPI04G13930	CmaCh02G012510	Cucurbita maxima (Rimu)	cmacpiB612
CSPI04G13930	CmaCh20G000860	Cucurbita maxima (Rimu)	cmacpiB554
CSPI04G13930	CmoCh20G000900	Cucurbita moschata (Rifu)	cmocpiB543
CSPI04G13930	CmoCh02G012890	Cucurbita moschata (Rifu)	cmocpiB603
CSPI04G13930	Cp4.1LG05g04830	Cucurbita pepo (Zucchini)	cpecpiB730
CSPI04G13930	Cp4.1LG16g08840	Cucurbita pepo (Zucchini)	cpecpiB282
CSPI04G13930	Carg02709	Silver-seed gourd	carcpiB0958
CSPI04G13930	Carg06903	Silver-seed gourd	carcpiB0559

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G13930	Watermelon (Charleston Gray)	cpiwcgB303
CSPI04G13930	Cucumber (Gy14) v2	cgybcpiB170