CSPI04G12990 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G12990
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 11215888 .. 11216191 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAATCCGAATGGAATTTTCGCGGGGCAAGTACGCAATGACGGCCGATTGCCGCCTCCATTATTTCTTTGCTCTTGAAGAAATGAAGTTTAACGAAATTATAAATGTCCCCCAGAAGGTTTGCTATTTTGCTGCCTTTGCCACACAATCACACAATGCAACTTCTTCCCATTTTTCTTTTCAATCATTTATTACAAAAATACACTTCTTATATAGCTTTTCTTTTTTAGTATCTTCTTATCCAACTTATTACTTTCGTTTCCATCGGTTTGGGTCCGATTGAGTTCGACTTTTCTTGA

mRNA sequence

ATGGGAGAAATCCGAATGGAATTTTCGCGGGGCAAGTACGCAATGACGGCCGATTGCCGCCTCCATTATTTCTTTGCTCTTGAAGAAATGAAGTTTAACGAAATTATAAATGTCCCCCAGAAGTATCTTCTTATCCAACTTATTACTTTCGTTTCCATCGGTTTGGGTCCGATTGAGTTCGACTTTTCTTGA

Coding sequence (CDS)

ATGGGAGAAATCCGAATGGAATTTTCGCGGGGCAAGTACGCAATGACGGCCGATTGCCGCCTCCATTATTTCTTTGCTCTTGAAGAAATGAAGTTTAACGAAATTATAAATGTCCCCCAGAAGTATCTTCTTATCCAACTTATTACTTTCGTTTCCATCGGTTTGGGTCCGATTGAGTTCGACTTTTCTTGA

Homology

[Close]

BLAST of CSPI04G12990 vs. TrEMBL
Match: A0A0A0KWU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280470 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.9e-27
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 1


Query: 1  MGEIRMEFSRGKYAMTADCRLHYFFALEEMKFNEIINVPQKYLLIQLITFVSIGLGPIEF 60
          MGEIRMEFSRGKYAMTADCRLHYFFALEEMKFNEIINVPQKYLLIQLITFVSI LGPIEF
Sbjct: 1  MGEIRMEFSRGKYAMTADCRLHYFFALEEMKFNEIINVPQKYLLIQLITFVSICLGPIEF 60

Query: 61 DFS 64
          DFS
Sbjct: 61 DFS 63

[Close]

BLAST of CSPI04G12990 vs. NCBI nr
Match: gi|700198912|gb|KGN54070.1| (hypothetical protein Csa_4G280470 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 8.5e-27
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 1


Query: 1  MGEIRMEFSRGKYAMTADCRLHYFFALEEMKFNEIINVPQKYLLIQLITFVSIGLGPIEF 60
          MGEIRMEFSRGKYAMTADCRLHYFFALEEMKFNEIINVPQKYLLIQLITFVSI LGPIEF
Sbjct: 1  MGEIRMEFSRGKYAMTADCRLHYFFALEEMKFNEIINVPQKYLLIQLITFVSICLGPIEF 60

Query: 61 DFS 64
          DFS
Sbjct: 61 DFS 63

The following BLAST results are available for this feature:

BLAST of CSPI04G12990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G12990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWU6_CUCSA	5.9e-27	98.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280470 PE=4 SV=1	[more]

BLAST of CSPI04G12990 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G12990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198912\|gb\|KGN54070.1\|	8.5e-27	98.41	hypothetical protein Csa_4G280470 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G12990.1	CSPI04G12990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G12990	Csa4G280470	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G12990	CsaV3_4G023340	Cucumber (Chinese Long) v3	cpicucB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G12990	Cucurbita moschata (Rifu)	cmocpiB543
CSPI04G12990	Cucurbita moschata (Rifu)	cmocpiB603
CSPI04G12990	Melon (DHL92) v3.5.1	cpimeB289
CSPI04G12990	Watermelon (Charleston Gray)	cpiwcgB303
CSPI04G12990	Watermelon (97103) v1	cpiwmB353
CSPI04G12990	Cucurbita pepo (Zucchini)	cpecpiB282
CSPI04G12990	Cucurbita pepo (Zucchini)	cpecpiB730
CSPI04G12990	Bottle gourd (USVL1VR-Ls)	cpilsiB245
CSPI04G12990	Melon (DHL92) v3.6.1	cpimedB283
CSPI04G12990	Cucumber (Gy14) v2	cgybcpiB170
CSPI04G12990	Silver-seed gourd	carcpiB0559
CSPI04G12990	Silver-seed gourd	carcpiB0958
CSPI04G12990	Watermelon (97103) v2	cpiwmbB294
CSPI04G12990	Wax gourd	cpiwgoB394
CSPI04G12990	Cucumber (Gy14) v1	cgycpiB225
CSPI04G12990	Cucumber (Gy14) v1	cgycpiB361
CSPI04G12990	Cucurbita maxima (Rimu)	cmacpiB554
CSPI04G12990	Cucurbita maxima (Rimu)	cmacpiB612