CSPI04G12310 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G12310
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	Chr4 : 10639998 .. 10640609 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAAACCAGGGTTGGAAAACAAGGCAGCAGATGCCCTCTCGCGAATACCACCAACGGCCCATCTTAACCAACTAACCGCTCACACTTTGGTAGACATCAAAGTAATCAGAGAGGAAGTTGACAAAGATGAATATTTGAAGAATATCATCGACAGAATTCAGAGGGAGGAAGAGGTAAAGAACTACACTCTGCAACAAGGCATACTGAGATACAAAGGGAGGTTAGTAATCGCGAAGAACTCCTCATTAAGACCAGCCATTCTGCACACATATCATGATTCAGTCCTAGGGGGTCATTCATGATTCTTAAGAACATATAAACGAATGACAGGAGAGCTGTTTTGGGTGGGAATGAAGGCAGAAGTGCGAAGATATTGCGAAGAATGTATGACGTGCCAGCGGAATAAAACTTTAGCATTATCTCCAGCAGGATTATTGACTCCCCTCGAGGTCCCAAAGAGAGTATGGGAGGATATATCCATGGATTTTATTGAAGGACTGCCTAAATCAATGGGGTTTGATGTCATATTCGTAGTGGTGGATCGCTTCAGCAAATATGCGCATTTCCTCAGCCTTAAACATCCCTTTGACGCAAAGATGGTAGCTTAA

mRNA sequence

ATGTACAAACCAGGGTTGGAAAACAAGGCAGCAGATGCCCTCTCGCGAATACCACCAACGGCCCATCTTAACCAACTAACCGCTCACACTTTGGTAGACATCAAAGTAATCAGAGAGGAAGTTGACAAAGATGAATATTTGAAGAATATCATCGACAGAATTCAGAGGGAGGAAGAGGTAAAGAACTACACTCTGCAACAAGGCATACTGAGATACAAAGGGAGAACATATAAACGAATGACAGGAGAGCTGTTTTGGGTGGGAATGAAGGCAGAAGTGCGAAGATATTGCGAAGAATGTATGACGTGCCAGCGGAATAAAACTTTAGCATTATCTCCAGCAGGATTATTGACTCCCCTCGAGGTCCCAAAGAGAGTATGGGAGGATATATCCATGGATTTTATTGAAGGACTGCCTAAATCAATGGGGTTTGATGTCATATTCGTAGTGGTGGATCGCTTCAGCAAATATGCGCATTTCCTCAGCCTTAAACATCCCTTTGACGCAAAGATGGTAGCTTAA

Coding sequence (CDS)

ATGTACAAACCAGGGTTGGAAAACAAGGCAGCAGATGCCCTCTCGCGAATACCACCAACGGCCCATCTTAACCAACTAACCGCTCACACTTTGGTAGACATCAAAGTAATCAGAGAGGAAGTTGACAAAGATGAATATTTGAAGAATATCATCGACAGAATTCAGAGGGAGGAAGAGGTAAAGAACTACACTCTGCAACAAGGCATACTGAGATACAAAGGGAGAACATATAAACGAATGACAGGAGAGCTGTTTTGGGTGGGAATGAAGGCAGAAGTGCGAAGATATTGCGAAGAATGTATGACGTGCCAGCGGAATAAAACTTTAGCATTATCTCCAGCAGGATTATTGACTCCCCTCGAGGTCCCAAAGAGAGTATGGGAGGATATATCCATGGATTTTATTGAAGGACTGCCTAAATCAATGGGGTTTGATGTCATATTCGTAGTGGTGGATCGCTTCAGCAAATATGCGCATTTCCTCAGCCTTAAACATCCCTTTGACGCAAAGATGGTAGCTTAA

Homology

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BLAST of CSPI04G12310 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 65/218 (29.82%), Postives = 92/218 (42.20%), Query Frame = 1


Query: 2    YKPGLENKAADALSRI-------PPTAHLNQLTAHTLVDI-------------------- 61
            Y+PG  N  ADALSRI       P  +  N +     + I                    
Sbjct: 817  YRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLN 876

Query: 62   ------KVIREEVD-KDEYLKNIIDRIQREEE-------VKNY-----TLQQGILRYKGR 121
                  K + E +  KD  L N  D+I    +       +K Y      +  GI      
Sbjct: 877  LLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNI 936

Query: 122  TYKRMTGELFWVGMKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFI 174
              +R T    W G++ +++ Y + C TCQ NK+    P G L P+   +R WE +SMDFI
Sbjct: 937  ILRRFT----WKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFI 996

[Close]

BLAST of CSPI04G12310 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 65/218 (29.82%), Postives = 92/218 (42.20%), Query Frame = 1


Query: 2    YKPGLENKAADALSRI-------PPTAHLNQLTAHTLVDI-------------------- 61
            Y+PG  N  ADALSRI       P  +  N +     + I                    
Sbjct: 817  YRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLN 876

Query: 62   ------KVIREEVD-KDEYLKNIIDRIQREEE-------VKNY-----TLQQGILRYKGR 121
                  K + E +  KD  L N  D+I    +       +K Y      +  GI      
Sbjct: 877  LLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNI 936

Query: 122  TYKRMTGELFWVGMKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFI 174
              +R T    W G++ +++ Y + C TCQ NK+    P G L P+   +R WE +SMDFI
Sbjct: 937  ILRRFT----WKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFI 996

[Close]

BLAST of CSPI04G12310 vs. Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 65/218 (29.82%), Postives = 92/218 (42.20%), Query Frame = 1


Query: 2    YKPGLENKAADALSRI-------PPTAHLNQLTAHTLVDI-------------------- 61
            Y+PG  N  ADALSRI       P  +  N +     + I                    
Sbjct: 817  YRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLN 876

Query: 62   ------KVIREEVD-KDEYLKNIIDRIQREEE-------VKNY-----TLQQGILRYKGR 121
                  K + E +  KD  L N  D+I    +       +K Y      +  GI      
Sbjct: 877  LLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNI 936

Query: 122  TYKRMTGELFWVGMKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFI 174
              +R T    W G++ +++ Y + C TCQ NK+    P G L P+   +R WE +SMDFI
Sbjct: 937  ILRRFT----WKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFI 996

[Close]

BLAST of CSPI04G12310 vs. Swiss-Prot
Match: TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 65/218 (29.82%), Postives = 92/218 (42.20%), Query Frame = 1


Query: 2    YKPGLENKAADALSRI-------PPTAHLNQLTAHTLVDI-------------------- 61
            Y+PG  N  ADALSRI       P  +  N +     + I                    
Sbjct: 817  YRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLN 876

Query: 62   ------KVIREEVD-KDEYLKNIIDRIQREEE-------VKNY-----TLQQGILRYKGR 121
                  K + E +  KD  L N  D+I    +       +K Y      +  GI      
Sbjct: 877  LLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNI 936

Query: 122  TYKRMTGELFWVGMKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFI 174
              +R T    W G++ +++ Y + C TCQ NK+    P G L P+   +R WE +SMDFI
Sbjct: 937  ILRRFT----WKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFI 996

[Close]

BLAST of CSPI04G12310 vs. Swiss-Prot
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 65/218 (29.82%), Postives = 92/218 (42.20%), Query Frame = 1


Query: 2    YKPGLENKAADALSRI-------PPTAHLNQLTAHTLVDI-------------------- 61
            Y+PG  N  ADALSRI       P  +  N +     + I                    
Sbjct: 817  YRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLN 876

Query: 62   ------KVIREEVD-KDEYLKNIIDRIQREEE-------VKNY-----TLQQGILRYKGR 121
                  K + E +  KD  L N  D+I    +       +K Y      +  GI      
Sbjct: 877  LLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNI 936

Query: 122  TYKRMTGELFWVGMKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFI 174
              +R T    W G++ +++ Y + C TCQ NK+    P G L P+   +R WE +SMDFI
Sbjct: 937  ILRRFT----WKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFI 996

[Close]

BLAST of CSPI04G12310 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 97/203 (47.78%), Postives = 134/203 (66.01%), Query Frame = 1


Query: 2   YKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQRE-EEV 61
           Y+ G ENKAADALSRIP  A LN +   +++D+KV+ +EV +D+ LK+I +++ ++ + +
Sbjct: 779 YRAGPENKAADALSRIPGEAQLNAIAVPSILDVKVVEKEVQEDDKLKDIFEQLLKDPDSI 838

Query: 62  KNYTLQQGILRYKGR------------------------------TYKRMTGELFWVGMK 121
             Y+++QG L YKGR                              TYKR+  EL+W GMK
Sbjct: 839 PRYSIKQGRLFYKGRLVLPKTSSLLPTILHTFHDLVVGGHSGQLRTYKRIAAELYWEGMK 898

Query: 122 AEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVV 174
            +++ Y ++C  CQ+NKT ALSPAGLL PL +P R+WEDISMDFIEGLP+S  FD + VV
Sbjct: 899 NDIKIYVDQCPVCQQNKTQALSPAGLLQPLPIPSRIWEDISMDFIEGLPRSRTFDSVLVV 958

[Close]

BLAST of CSPI04G12310 vs. TrEMBL
Match: A2Q2C7_MEDTR (RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold OS=Medicago truncatula GN=MtrDRAFT_AC150244g37v2 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.5e-40
Identity = 93/205 (45.37%), Postives = 123/205 (60.00%), Query Frame = 1


Query: 1   MYKPGLENKAADALSRIPPTAHLNQ-LTAHTLVDIKVIREEVDKDEYLKNIIDRIQREEE 60
           +YKPG  NK ADALSR+     L Q +T+    D K++REE+ +D  L+ II  +QR+  
Sbjct: 776 IYKPGKLNKGADALSRVREDGELCQGITSVQWKDEKLLREELSRDSQLQKIIGDLQRDAS 835

Query: 61  VK-NYTLQQGILRYKG------------------------------RTYKRMTGELFWVG 120
            +  Y L+QG+L Y+G                              RTY+R+   ++WVG
Sbjct: 836 SRPGYMLKQGVLLYEGRLVVSSKSVMIPTLLAEFHSTPQGGHSGFYRTYRRLAANVYWVG 895

Query: 121 MKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIF 174
           MK  V+ Y   C TCQR K LA SP GLL PL VP R+WED+SMDFI GLPKS G++ + 
Sbjct: 896 MKNTVQEYVRSCDTCQRQKYLASSPGGLLQPLPVPDRIWEDLSMDFIMGLPKSKGYEAVL 955

[Close]

BLAST of CSPI04G12310 vs. TrEMBL
Match: A5CAG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-39
Identity = 90/203 (44.33%), Postives = 121/203 (59.61%), Query Frame = 1


Query: 2   YKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQRE-EEV 61
           ++PG++NKA DALSRIP +  L  L   + +D  +I  +V+ D  L  I  R+  + +  
Sbjct: 495 FRPGMKNKAVDALSRIPISMELAALMVPSRIDTSLISSQVEADPCLAKIKQRLLDDLDAY 554

Query: 62  KNYTLQQGILRYKGR------------------------------TYKRMTGELFWVGMK 121
             Y L  GIL YKG                               TYKR+T + FWVGMK
Sbjct: 555 PRYALDHGILIYKGCLVFPKASPLVPALLQEGHASVVGGHSGFLWTYKRLTRDFFWVGMK 614

Query: 122 AEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVV 174
            +++ + E+C+ CQ+NKTL LS AGLL PL +P ++W+D++MDFIEGLPKS G++ I VV
Sbjct: 615 NDIKEFVEKCLVCQQNKTLTLSLAGLLQPLPIPDKIWDDVTMDFIEGLPKSEGYNFILVV 674

[Close]

BLAST of CSPI04G12310 vs. TrEMBL
Match: A0A087FZI0_ARAAL (Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs71112U000100 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 91/203 (44.83%), Postives = 119/203 (58.62%), Query Frame = 1


Query: 2    YKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREEEVK 61
            YKPGLENKAADALSRI     L  L+ H  + +  I E ++KDE L  +   +  +    
Sbjct: 836  YKPGLENKAADALSRIDAVPQLCALSMHVAIQLSEIDEAIEKDEELSKLKQEVVTDATSH 895

Query: 62   -NYTLQQGILRYKGR------------------------------TYKRMTGELFWVGMK 121
             +Y++ QG L  KGR                              T +R++   FW GM 
Sbjct: 896  PDYSVVQGRLFMKGRLVLPAASPLVKLVLQEFHDGKMGGHGGVLKTQRRVSEMFFWKGML 955

Query: 122  AEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVV 174
            A++R+Y  EC  CQR+K   L+PAGLL PL VPK+VWEDISMDF+EGLPKS G+DV+ VV
Sbjct: 956  ADIRQYVVECQVCQRHKYSTLAPAGLLQPLPVPKQVWEDISMDFVEGLPKSDGYDVVMVV 1015

[Close]

BLAST of CSPI04G12310 vs. TrEMBL
Match: E2DMZ5_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37
Identity = 89/204 (43.63%), Postives = 119/204 (58.33%), Query Frame = 1


Query: 2    YKPGLENKAADALSRI-PPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQR-EEE 61
            YKPG  NK ADALSR  PP A  N LT+      ++I + + +D  L++++  +      
Sbjct: 1018 YKPGGHNKVADALSRKHPPEAEYNLLTSSHSPHQELIAQAIRQDADLQHLMAEVTAGRTP 1077

Query: 62   VKNYTLQQGILRYKGR------------------------------TYKRMTGELFWVGM 121
            ++ +T++ G+L+Y GR                              TYKR+ GE +W GM
Sbjct: 1078 LQGFTVEHGLLKYNGRLVIPKNVPLTTTLLEEYHSSPMGGHSGIFKTYKRLAGEWYWKGM 1137

Query: 122  KAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFV 174
            K +V  + + C  CQ+ KT  LSPAGLL PL +P  +WEDISMDF+EGLPKS G+D I V
Sbjct: 1138 KKDVTTFVQNCQICQQFKTSTLSPAGLLQPLPIPLAIWEDISMDFVEGLPKSQGWDTILV 1197

[Close]

BLAST of CSPI04G12310 vs. NCBI nr
Match: gi|307136175|gb|ADN34016.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 194.5 bits (493), Expect = 1.5e-46
Identity = 97/203 (47.78%), Postives = 134/203 (66.01%), Query Frame = 1


Query: 2   YKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQRE-EEV 61
           Y+ G ENKAADALSRIP  A LN +   +++D+KV+ +EV +D+ LK+I +++ ++ + +
Sbjct: 779 YRAGPENKAADALSRIPGEAQLNAIAVPSILDVKVVEKEVQEDDKLKDIFEQLLKDPDSI 838

Query: 62  KNYTLQQGILRYKGR------------------------------TYKRMTGELFWVGMK 121
             Y+++QG L YKGR                              TYKR+  EL+W GMK
Sbjct: 839 PRYSIKQGRLFYKGRLVLPKTSSLLPTILHTFHDLVVGGHSGQLRTYKRIAAELYWEGMK 898

Query: 122 AEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVV 174
            +++ Y ++C  CQ+NKT ALSPAGLL PL +P R+WEDISMDFIEGLP+S  FD + VV
Sbjct: 899 NDIKIYVDQCPVCQQNKTQALSPAGLLQPLPIPSRIWEDISMDFIEGLPRSRTFDSVLVV 958

[Close]

BLAST of CSPI04G12310 vs. NCBI nr
Match: gi|659118472|ref|XP_008459139.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103498341 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 1.5e-41
Identity = 97/195 (49.74%), Postives = 124/195 (63.59%), Query Frame = 1


Query: 10  AADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREEEVK-NYTLQQG 69
           AADALSR+   A LN L AH L+DI+++  EV+KDE L++II+ ++   E K NY  + G
Sbjct: 205 AADALSRVKLPAELNSLRAHGLLDIEIVTTEVEKDEELQDIINILKENPEGKANYQWKSG 264

Query: 70  ILRYKGR------------------------------TYKRMTGELFWVGMKAEVRRYCE 129
            L YKGR                              TYKRM GE+ W+GMK +V++Y E
Sbjct: 265 NLLYKGRLVMSKNFTLIPSLLHTFHDSVLGGHLGFLKTYKRMNGEIHWMGMKNDVKKYVE 324

Query: 130 ECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVVVDRFSKYA 174
           +C  CQRNKT AL+PAGLL PL +P  + ED +MDFIEGLPK+ G+D I V+VDR SK A
Sbjct: 325 QCEICQRNKTEALAPAGLLQPLPLPNLILEDWTMDFIEGLPKAGGYDSIMVIVDRLSKMA 384

[Close]

BLAST of CSPI04G12310 vs. NCBI nr
Match: gi|124359710|gb|ABN06064.1| (RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula])

HSP 1 Score: 173.3 bits (438), Expect = 3.7e-40
Identity = 93/205 (45.37%), Postives = 123/205 (60.00%), Query Frame = 1


Query: 1   MYKPGLENKAADALSRIPPTAHLNQ-LTAHTLVDIKVIREEVDKDEYLKNIIDRIQREEE 60
           +YKPG  NK ADALSR+     L Q +T+    D K++REE+ +D  L+ II  +QR+  
Sbjct: 776 IYKPGKLNKGADALSRVREDGELCQGITSVQWKDEKLLREELSRDSQLQKIIGDLQRDAS 835

Query: 61  VK-NYTLQQGILRYKG------------------------------RTYKRMTGELFWVG 120
            +  Y L+QG+L Y+G                              RTY+R+   ++WVG
Sbjct: 836 SRPGYMLKQGVLLYEGRLVVSSKSVMIPTLLAEFHSTPQGGHSGFYRTYRRLAANVYWVG 895

Query: 121 MKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIF 174
           MK  V+ Y   C TCQR K LA SP GLL PL VP R+WED+SMDFI GLPKS G++ + 
Sbjct: 896 MKNTVQEYVRSCDTCQRQKYLASSPGGLLQPLPVPDRIWEDLSMDFIMGLPKSKGYEAVL 955

[Close]

BLAST of CSPI04G12310 vs. NCBI nr
Match: gi|719968486|ref|XP_010264998.1| (PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera])

HSP 1 Score: 172.6 bits (436), Expect = 6.2e-40
Identity = 93/203 (45.81%), Postives = 116/203 (57.14%), Query Frame = 1


Query: 2    YKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREEEV- 61
            YKPG EN  ADALSR+P   HLN LT    +D   ++E+VD D +L NI + IQ +    
Sbjct: 1116 YKPGTENAVADALSRVPAEMHLNSLTVPIFLDFDDLKEQVDVDSFLANIKNVIQHDPAAY 1175

Query: 62   KNYTLQQGILRYKG------------------------------RTYKRMTGELFWVGMK 121
              Y+L    LRY G                              RTY+RM  E +W G+K
Sbjct: 1176 PAYSLVGDHLRYHGKLVLPASSPFIPLLLKEFHSGVVGGHTGIHRTYRRMVAEFYWWGIK 1235

Query: 122  AEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVV 174
              V+ + + C  CQR+K  A+SP GLL PL +P+++WEDI+MDFIE LPKS GFD I VV
Sbjct: 1236 CFVQEFVQACDVCQRSKYEAMSPVGLLQPLPIPEQIWEDIAMDFIEALPKSKGFDTIMVV 1295

[Close]

BLAST of CSPI04G12310 vs. NCBI nr
Match: gi|147807720|emb|CAN66553.1| (hypothetical protein VITISV_018166 [Vitis vinifera])

HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39
Identity = 90/203 (44.33%), Postives = 121/203 (59.61%), Query Frame = 1


Query: 2   YKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQRE-EEV 61
           ++PG++NKA DALSRIP +  L  L   + +D  +I  +V+ D  L  I  R+  + +  
Sbjct: 495 FRPGMKNKAVDALSRIPISMELAALMVPSRIDTSLISSQVEADPCLAKIKQRLLDDLDAY 554

Query: 62  KNYTLQQGILRYKGR------------------------------TYKRMTGELFWVGMK 121
             Y L  GIL YKG                               TYKR+T + FWVGMK
Sbjct: 555 PRYALDHGILIYKGCLVFPKASPLVPALLQEGHASVVGGHSGFLWTYKRLTRDFFWVGMK 614

Query: 122 AEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVV 174
            +++ + E+C+ CQ+NKTL LS AGLL PL +P ++W+D++MDFIEGLPKS G++ I VV
Sbjct: 615 NDIKEFVEKCLVCQQNKTLTLSLAGLLQPLPIPDKIWDDVTMDFIEGLPKSEGYNFILVV 674

The following BLAST results are available for this feature:

BLAST of CSPI04G12310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TF211_SCHPO	2.0e-14	29.82	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF212_SCHPO	2.0e-14	29.82	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF21_SCHPO	2.0e-14	29.82	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF22_SCHPO	2.0e-14	29.82	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF23_SCHPO	2.0e-14	29.82	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CSPI04G12310 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC18_CUCME	1.1e-46	47.78	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A2Q2C7_MEDTR	2.5e-40	45.37	RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-t...	[more]
A5CAG1_VITVI	1.6e-39	44.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1	[more]
A0A087FZI0_ARAAL	1.1e-38	44.83	Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs71112U000100 PE=4...	[more]
E2DMZ5_BETVU	1.5e-37	43.63	Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1	[more]

BLAST of CSPI04G12310 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G12310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136175\|gb\|ADN34016.1\|	1.5e-46	47.78	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659118472\|ref\|XP_008459139.1\|	1.5e-41	49.74	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103498341 [Cucumis me...	[more]
gi\|124359710\|gb\|ABN06064.1\|	3.7e-40	45.37	RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-t...	[more]
gi\|719968486\|ref\|XP_010264998.1\|	6.2e-40	45.81	PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]	[more]
gi\|147807720\|emb\|CAN66553.1\|	2.4e-39	44.33	hypothetical protein VITISV_018166 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G12310.1	CSPI04G12310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 122..167 score: 1.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 119..172 score: 4.
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..173 score: 7.8
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 1..173 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G12310	Melon (DHL92) v3.6.1	cpimedB298
CSPI04G12310	Melon (DHL92) v3.6.1	cpimedB321
CSPI04G12310	Cucumber (Gy14) v2	cgybcpiB171
CSPI04G12310	Silver-seed gourd	carcpiB0702
CSPI04G12310	Silver-seed gourd	carcpiB1081
CSPI04G12310	Cucumber (Chinese Long) v3	cpicucB216
CSPI04G12310	Watermelon (97103) v2	cpiwmbB292
CSPI04G12310	Wax gourd	cpiwgoB423
CSPI04G12310	Cucurbita maxima (Rimu)	cmacpiB023
CSPI04G12310	Cucurbita maxima (Rimu)	cmacpiB473
CSPI04G12310	Cucurbita moschata (Rifu)	cmocpiB014
CSPI04G12310	Cucurbita moschata (Rifu)	cmocpiB463
CSPI04G12310	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G12310	Melon (DHL92) v3.5.1	cpimeB304
CSPI04G12310	Melon (DHL92) v3.5.1	cpimeB339
CSPI04G12310	Watermelon (Charleston Gray)	cpiwcgB295
CSPI04G12310	Watermelon (97103) v1	cpiwmB361
CSPI04G12310	Cucurbita pepo (Zucchini)	cpecpiB578
CSPI04G12310	Cucurbita pepo (Zucchini)	cpecpiB787
CSPI04G12310	Bottle gourd (USVL1VR-Ls)	cpilsiB264
CSPI04G12310	Bottle gourd (USVL1VR-Ls)	cpilsiB295