CSPI04G12150 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G12150
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 10477553 .. 10477852 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACTGGTCAGTGTGAAACCAGTCAGCCTAATACTCGAATAGTTGACAAAGGGGTGGGGGTTGATGTTGATGTTGATCTGAAGAACTTTCCTGTTCTTCTGGCTGAATTTACTCGACAGTTTTCGGGGAATGGGGTGTGGAGAGATGAGCTGAGGAGAATGGAAGAGAAGAATTTGAAGGATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGCTGAGCTTAAGGCAAGAAAGACTGCTTTATTAAAGCAGCAACTTAGAACTACAGAGACTAATGAAGATGTGAATTAG

mRNA sequence

ATGACAACTGGTCAGTGTGAAACCAGTCAGCCTAATACTCGAATAGTTGACAAAGGGGTGGGGGTTGATGTTGATGTTGATCTGAAGAACTTTCCTGTTCTTCTGGCTGAATTTACTCGACAGTTTTCGGGGAATGGGGTGTGGAGAGATGAGCTGAGGAGAATGGAAGAGAAGAATTTGAAGGATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGCTGAGCTTAAGGCAAGAAAGACTGCTTTATTAAAGCAGCAACTTAGAACTACAGAGACTAATGAAGATGTGAATTAG

Coding sequence (CDS)

ATGACAACTGGTCAGTGTGAAACCAGTCAGCCTAATACTCGAATAGTTGACAAAGGGGTGGGGGTTGATGTTGATGTTGATCTGAAGAACTTTCCTGTTCTTCTGGCTGAATTTACTCGACAGTTTTCGGGGAATGGGGTGTGGAGAGATGAGCTGAGGAGAATGGAAGAGAAGAATTTGAAGGATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGCTGAGCTTAAGGCAAGAAAGACTGCTTTATTAAAGCAGCAACTTAGAACTACAGAGACTAATGAAGATGTGAATTAG

Homology

[Close]

BLAST of CSPI04G12150 vs. TrEMBL
Match: A0A0A0LBY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G593690 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-44
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1


Query: 1   MTTGQCETSQPNTRIVDK--GVGVDVDVDLKNFPVLLAEFTRQFSGNGVWRDELRRMEEK 60
           MTTGQCETS+PNTRIVDK  GV VDVDVDLKNFPVLLAEF+RQF GNGVWRD LRRMEEK
Sbjct: 1   MTTGQCETSKPNTRIVDKRVGVDVDVDVDLKNFPVLLAEFSRQFPGNGVWRDGLRRMEEK 60

Query: 61  NLKDMNEKWVLLHIEGAELKARKTALLKQQLRTTETNEDVN 100
           NLKDMNEKWVLLHIEGAELKARKTALLKQQLRTTETNEDVN
Sbjct: 61  NLKDMNEKWVLLHIEGAELKARKTALLKQQLRTTETNEDVN 101

[Close]

BLAST of CSPI04G12150 vs. TrEMBL
Match: A0A0A0KAX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G148320 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.3e-32
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 14  RIVDKGVGVDVDVDLKNFPVLLAEFTRQFSGNGVWRDELRRMEEKNLKDMNEKWVLLHIE 73
           R + +  GV VDVDLKNFPVL+AEF+RQF GNGVWRD LRRM EKNLKDMNEKWVLLHIE
Sbjct: 143 RSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLHIE 202

Query: 74  GAELKARKTALLKQQLRTTETNEDVN 100
           GAELKAR+ ALLK+QLRTTETNEDVN
Sbjct: 203 GAELKARRAALLKEQLRTTETNEDVN 228

[Close]

BLAST of CSPI04G12150 vs. TrEMBL
Match: A0A0D2QP62_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G117300 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.3e-08
Identity = 31/81 (38.27%), Postives = 55/81 (67.90%), Query Frame = 1


Query: 12  NTRIVDKG---VGVDVDVDLKNFPVLLAEFTRQFSGNGVWRDELRRMEEKNLKDMNEKWV 71
           N++  D+G   +G D    L  FP L+AEF++    N VW+ +++R+EE+ L+ M+++WV
Sbjct: 111 NSKSEDQGAIEMGGDGVEKLDKFPYLVAEFSKVLPENEVWKQKMKRVEEEKLRKMDQEWV 170

Query: 72  LLHIEGAELKARKTALLKQQL 90
           +L +E A+L A+K  L++QQ+
Sbjct: 171 MLKVEEAKLVAKKAELIQQQI 191

[Close]

BLAST of CSPI04G12150 vs. TrEMBL
Match: A0A061GV42_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041581 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 24/62 (38.71%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 28  LKNFPVLLAEFTRQFSGNGVWRDELRRMEEKNLKDMNEKWVLLHIEGAELKARKTALLKQ 87
           L+ FP L+AEF+R    N VW++ ++ +EE+ L+ M+++W+ + +E A+L A+K  L++Q
Sbjct: 129 LEKFPYLVAEFSRVLPENEVWKERMKGLEEEKLRKMDQEWIFIKVEEAKLVAKKADLMQQ 188

Query: 88  QL 90
           Q+
Sbjct: 189 QI 190

[Close]

BLAST of CSPI04G12150 vs. TrEMBL
Match: A0A059DA76_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03921 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-06
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 27  DLKNFPVLLAEFTRQFSGNGVWRDELRRMEEKNLKDMNEKWVLLHIEGAELKARKTALLK 86
           DL +FP L+ E  R F GNGVWR+ L+R+EE  L+ +NE+ V L +E A L A+K  L +
Sbjct: 179 DLGSFPALVEECERCFPGNGVWREGLKRLEEGRLRKVNERVVWLRMEEATLMAKKAELTQ 238

Query: 87  QQLR 91
              R
Sbjct: 239 DLTR 242

[Close]

BLAST of CSPI04G12150 vs. NCBI nr
Match: gi|700203084|gb|KGN58217.1| (hypothetical protein Csa_3G593690 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.1e-44
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1


Query: 1   MTTGQCETSQPNTRIVDK--GVGVDVDVDLKNFPVLLAEFTRQFSGNGVWRDELRRMEEK 60
           MTTGQCETS+PNTRIVDK  GV VDVDVDLKNFPVLLAEF+RQF GNGVWRD LRRMEEK
Sbjct: 1   MTTGQCETSKPNTRIVDKRVGVDVDVDVDLKNFPVLLAEFSRQFPGNGVWRDGLRRMEEK 60

Query: 61  NLKDMNEKWVLLHIEGAELKARKTALLKQQLRTTETNEDVN 100
           NLKDMNEKWVLLHIEGAELKARKTALLKQQLRTTETNEDVN
Sbjct: 61  NLKDMNEKWVLLHIEGAELKARKTALLKQQLRTTETNEDVN 101

[Close]

BLAST of CSPI04G12150 vs. NCBI nr
Match: gi|700191686|gb|KGN46890.1| (hypothetical protein Csa_6G148320 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 4.7e-32
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 14  RIVDKGVGVDVDVDLKNFPVLLAEFTRQFSGNGVWRDELRRMEEKNLKDMNEKWVLLHIE 73
           R + +  GV VDVDLKNFPVL+AEF+RQF GNGVWRD LRRM EKNLKDMNEKWVLLHIE
Sbjct: 143 RSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLHIE 202

Query: 74  GAELKARKTALLKQQLRTTETNEDVN 100
           GAELKAR+ ALLK+QLRTTETNEDVN
Sbjct: 203 GAELKARRAALLKEQLRTTETNEDVN 228

[Close]

BLAST of CSPI04G12150 vs. NCBI nr
Match: gi|823123484|ref|XP_012475884.1| (PREDICTED: uncharacterized protein LOC105792056 [Gossypium raimondii])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 31/81 (38.27%), Postives = 55/81 (67.90%), Query Frame = 1


Query: 12  NTRIVDKG---VGVDVDVDLKNFPVLLAEFTRQFSGNGVWRDELRRMEEKNLKDMNEKWV 71
           N++  D+G   +G D    L  FP L+AEF++    N VW+ +++R+EE+ L+ M+++WV
Sbjct: 111 NSKSEDQGAIEMGGDGVEKLDKFPYLVAEFSKVLPENEVWKQKMKRVEEEKLRKMDQEWV 170

Query: 72  LLHIEGAELKARKTALLKQQL 90
           +L +E A+L A+K  L++QQ+
Sbjct: 171 MLKVEEAKLVAKKAELIQQQI 191

[Close]

BLAST of CSPI04G12150 vs. NCBI nr
Match: gi|590587789|ref|XP_007016056.1| (Uncharacterized protein TCM_041581 [Theobroma cacao])

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 24/62 (38.71%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 28  LKNFPVLLAEFTRQFSGNGVWRDELRRMEEKNLKDMNEKWVLLHIEGAELKARKTALLKQ 87
           L+ FP L+AEF+R    N VW++ ++ +EE+ L+ M+++W+ + +E A+L A+K  L++Q
Sbjct: 129 LEKFPYLVAEFSRVLPENEVWKERMKGLEEEKLRKMDQEWIFIKVEEAKLVAKKADLMQQ 188

Query: 88  QL 90
           Q+
Sbjct: 189 QI 190

[Close]

BLAST of CSPI04G12150 vs. NCBI nr
Match: gi|629122962|gb|KCW87452.1| (hypothetical protein EUGRSUZ_B03921 [Eucalyptus grandis])

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-06
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 27  DLKNFPVLLAEFTRQFSGNGVWRDELRRMEEKNLKDMNEKWVLLHIEGAELKARKTALLK 86
           DL +FP L+ E  R F GNGVWR+ L+R+EE  L+ +NE+ V L +E A L A+K  L +
Sbjct: 179 DLGSFPALVEECERCFPGNGVWREGLKRLEEGRLRKVNERVVWLRMEEATLMAKKAELTQ 238

Query: 87  QQLR 91
              R
Sbjct: 239 DLTR 242

The following BLAST results are available for this feature:

BLAST of CSPI04G12150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G12150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBY9_CUCSA	2.2e-44	93.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G593690 PE=4 SV=1	[more]
A0A0A0KAX7_CUCSA	3.3e-32	82.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G148320 PE=4 SV=1	[more]
A0A0D2QP62_GOSRA	7.3e-08	38.27	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G117300 PE=4 SV=1	[more]
A0A061GV42_THECC	1.1e-06	38.71	Uncharacterized protein OS=Theobroma cacao GN=TCM_041581 PE=4 SV=1	[more]
A0A059DA76_EUCGR	4.0e-06	46.88	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03921 PE=4 SV=1	[more]

BLAST of CSPI04G12150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G12150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203084\|gb\|KGN58217.1\|	3.1e-44	93.07	hypothetical protein Csa_3G593690 [Cucumis sativus]	[more]
gi\|700191686\|gb\|KGN46890.1\|	4.7e-32	82.56	hypothetical protein Csa_6G148320 [Cucumis sativus]	[more]
gi\|823123484\|ref\|XP_012475884.1\|	1.1e-07	38.27	PREDICTED: uncharacterized protein LOC105792056 [Gossypium raimondii]	[more]
gi\|590587789\|ref\|XP_007016056.1\|	1.5e-06	38.71	Uncharacterized protein TCM_041581 [Theobroma cacao]	[more]
gi\|629122962\|gb\|KCW87452.1\|	5.8e-06	46.88	hypothetical protein EUGRSUZ_B03921 [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G12150.1	CSPI04G12150.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G12150	Bottle gourd (USVL1VR-Ls)	cpilsiB264
CSPI04G12150	Melon (DHL92) v3.6.1	cpimedB321
CSPI04G12150	Wax gourd	cpiwgoB423
CSPI04G12150	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G12150	Melon (DHL92) v3.5.1	cpimeB339