CSPI04G11780 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G11780
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 10054773 .. 10055054 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACAGCGGATAAATTCTCTTTTCTAGGGCACCGTGAGCGACGTGTCGGCGATCTATTCGACAAAACAACTTCCGAACCTCTTTTTGTTATTTCCACTTCTTCTGGATTTGGTGCGTACGAGGAAACCTTTACTCCACGCCTCACAAAGCGCGTGAATTCAACGAGCTCTCAACTATTGACACGTATGGTAAATCGCGGACTCGGGATTCTGTGTCGAACGCTAACAAGTCTTCGATTGATTTACCATAGCGACATGTCCAGTGCAGAGAGCGAGTAG

mRNA sequence

ATGGCAACAGCGGATAAATTCTCTTTTCTAGGGCACCGTGAGCGACGTGTCGGCGATCTATTCGACAAAACAACTTCCGAACCTCTTTTTGTTATTTCCACTTCTTCTGGATTTGGTGCGTACGAGGAAACCTTTACTCCACGCCTCACAAAGCGCGTGAATTCAACGAGCTCTCAACTATTGACACGTATGGTAAATCGCGGACTCGGGATTCTGTGTCGAACGCTAACAAGTCTTCGATTGATTTACCATAGCGACATGTCCAGTGCAGAGAGCGAGTAG

Coding sequence (CDS)

ATGGCAACAGCGGATAAATTCTCTTTTCTAGGGCACCGTGAGCGACGTGTCGGCGATCTATTCGACAAAACAACTTCCGAACCTCTTTTTGTTATTTCCACTTCTTCTGGATTTGGTGCGTACGAGGAAACCTTTACTCCACGCCTCACAAAGCGCGTGAATTCAACGAGCTCTCAACTATTGACACGTATGGTAAATCGCGGACTCGGGATTCTGTGTCGAACGCTAACAAGTCTTCGATTGATTTACCATAGCGACATGTCCAGTGCAGAGAGCGAGTAG
Homology
[Close]
BLAST of CSPI04G11780 vs. TrEMBL
Match: A0A0A0KWH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181210 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.6e-41
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 1 

Query: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTSSGFGAYEETFTPRLTKRVNSTSSQL 60
          MATADKFSFLGHRERRVGDLFDKTTSEPLFVIST SGFGAYEET TPRL KRVNSTSSQL
Sbjct: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTPSGFGAYEETSTPRLIKRVNSTSSQL 60

Query: 61 LTRMVNRGLGILCRTLTSLRLIYHSDMSSAESE 94
          LTRMVNRGLGILCRTLTSLRLIYHSDMSS ESE
Sbjct: 61 LTRMVNRGLGILCRTLTSLRLIYHSDMSSGESE 93

[Close]
BLAST of CSPI04G11780 vs. NCBI nr
Match: gi|700198730|gb|KGN53888.1| (hypothetical protein Csa_4G181210 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 5.2e-41
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 1 

Query: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTSSGFGAYEETFTPRLTKRVNSTSSQL 60
          MATADKFSFLGHRERRVGDLFDKTTSEPLFVIST SGFGAYEET TPRL KRVNSTSSQL
Sbjct: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTPSGFGAYEETSTPRLIKRVNSTSSQL 60

Query: 61 LTRMVNRGLGILCRTLTSLRLIYHSDMSSAESE 94
          LTRMVNRGLGILCRTLTSLRLIYHSDMSS ESE
Sbjct: 61 LTRMVNRGLGILCRTLTSLRLIYHSDMSSGESE 93

The following BLAST results are available for this feature:
BLAST of CSPI04G11780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G11780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWH4_CUCSA3.6e-4195.70Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181210 PE=4 SV=1[more]
BLAST of CSPI04G11780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G11780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198730|gb|KGN53888.1|5.2e-4195.70hypothetical protein Csa_4G181210 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G11780.1CSPI04G11780.1mRNA