CSPI04G11420 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G11420
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 9669165 .. 9669779 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAATTATTTAAGTCTGTAGAGGTCAAAAGCATAAAAAGTTTGAAGAACTAGATAACAAATAAACATCATTATTGAAGACATTAAGAGGCAGGAACCTAGTTCTTCAGATGCCCAAGATACAAACGAATATATAGTAAGCATGCGGTTTAAACTAAAATTTTATTTTCTAACTATGTGTACAAGTAATATACTGTCAAAATAGATTGTATTTGTAATGCATGGAGCAAGATCTTTCGAGGAGCACCTTGATAAGGTAGAAGAGAGCCAAGAAGAAGAAGAAGAAAAAGATGAAGATGCAGACCTGAACATGGAATCGATCAATCATAAAGTTCTTGAGAAAAAAGATGACCATGAAGACGGTGAAGGAAAGGAATGCATGACTGGAAGTGGGAACCAAATTTCTGGAAGGCCAGATGGTGGTCGAACGACATTGACCAAACTAGAAACACCTCCTCCTACCCAAACATGAGATGGAGAGCGATCATCGTATAAGGTAAATTAAAAAATCAATTATACTACAACATGTTGAAACAATGTAGAATACATCTTTAAAACTAAAATGTGTACATAACTGTAATAGGCCACATAGGATGCTGATGAAGAAATAAACCGGC

mRNA sequence

ATGCATGGAGCAAGATCTTTCGAGGAGCACCTTGATAAGGTAGAAGAGAGCCAAGAAGAAGAAGAAGAAAAAGATGAAGATGCAGACCTGAACATGGAATCGATCAATCATAAAGTTCTTGAGAAAAAAGATGACCATGAAGACGGTGAAGGAAAGGAATGCATGACTGGAAGTGGGAACCAAATTTCTGGAAGGCCAGATGGTGGTCGAACGACATTGACCAAACTAGAAACACCTCCTCCTACCCAAACATGA

Coding sequence (CDS)

ATGCATGGAGCAAGATCTTTCGAGGAGCACCTTGATAAGGTAGAAGAGAGCCAAGAAGAAGAAGAAGAAAAAGATGAAGATGCAGACCTGAACATGGAATCGATCAATCATAAAGTTCTTGAGAAAAAAGATGACCATGAAGACGGTGAAGGAAAGGAATGCATGACTGGAAGTGGGAACCAAATTTCTGGAAGGCCAGATGGTGGTCGAACGACATTGACCAAACTAGAAACACCTCCTCCTACCCAAACATGA
Homology
[Close]
BLAST of CSPI04G11420 vs. NCBI nr
Match: gi|778665228|ref|XP_011648518.1| (PREDICTED: uncharacterized protein LOC105434509 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 3   GARSFEEHLDKVEESQEEE-EEKDEDADLNMESINHKVLEKKDDHEDGEGKECMTGSGNQ 62
           GARSFE+HLDKVEE +EEE EE+DE A+LNMESIN K LEKKDDHED EG+  M  SGNQ
Sbjct: 78  GARSFEKHLDKVEEGKEEEDEEEDEAANLNMESINQKDLEKKDDHEDSEGRGGMAESGNQ 137

Query: 63  ISGRPDGGRTTLTK 76
            SG P GG+TTL K
Sbjct: 138 GSGEPVGGQTTLAK 151

[Close]
BLAST of CSPI04G11420 vs. NCBI nr
Match: gi|659125961|ref|XP_008462940.1| (PREDICTED: nucleolar protein 58-like [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 1 

Query: 4   ARSFEEHLDKVEESQEEEEEKDEDADLNMESINHKVLEKKDDHEDGEGKECMTGSGNQIS 63
           AR+FEEHLDKVEE QEE    D+  DLN++S N  VL K+DD+ED +GK  M  S ++  
Sbjct: 113 ARAFEEHLDKVEEDQEE----DDVEDLNLDSSNPTVLGKRDDNEDKDGKRIMDESRSESL 172

Query: 64  GRPDGGRTTLTKLETPP 81
              DGG++ + K ETPP
Sbjct: 173 RGQDGGQSKVAKSETPP 185

[Close]
BLAST of CSPI04G11420 vs. NCBI nr
Match: gi|659121360|ref|XP_008460620.1| (PREDICTED: FK506-binding protein 5-like [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-07
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1 

Query: 3   GARSFEEHLDKVEESQEEEEEKDEDADLNMESINHKVLEKKDDHEDGEGKECMTGSGNQI 62
           GAR+FEEHLDKVEE QEE    D+  DL ++S N  VL K+DD ED +GK  +  S  + 
Sbjct: 162 GARAFEEHLDKVEEDQEE----DDVEDLKLDSSNPTVLGKRDDDEDKDGKGLIDESRPES 221

Query: 63  SGRPDGGRTTLTKLETPP 81
           S   DGG++ + K ETPP
Sbjct: 222 SKGQDGGQSKMAKSETPP 235

The following BLAST results are available for this feature:
BLAST of CSPI04G11420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G11420 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI04G11420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G11420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665228|ref|XP_011648518.1|2.6e-1572.97PREDICTED: uncharacterized protein LOC105434509 [Cucumis sativus][more]
gi|659125961|ref|XP_008462940.1|2.0e-0751.95PREDICTED: nucleolar protein 58-like [Cucumis melo][more]
gi|659121360|ref|XP_008460620.1|5.8e-0751.28PREDICTED: FK506-binding protein 5-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G11420.1CSPI04G11420.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 4..27
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G11420Melon (DHL92) v3.6.1cpimedB314
CSPI04G11420Cucumber (Gy14) v2cgybcpiB168
CSPI04G11420Silver-seed gourdcarcpiB0314
CSPI04G11420Silver-seed gourdcarcpiB0661
CSPI04G11420Cucumber (Chinese Long) v3cpicucB213
CSPI04G11420Watermelon (97103) v2cpiwmbB309
CSPI04G11420Wax gourdcpiwgoB408
CSPI04G11420Cucumber (Gy14) v1cgycpiB009
CSPI04G11420Cucurbita maxima (Rimu)cmacpiB672
CSPI04G11420Cucurbita maxima (Rimu)cmacpiB877
CSPI04G11420Cucurbita moschata (Rifu)cmocpiB663
CSPI04G11420Cucurbita moschata (Rifu)cmocpiB857
CSPI04G11420Cucumber (Chinese Long) v2cpicuB183
CSPI04G11420Melon (DHL92) v3.5.1cpimeB323
CSPI04G11420Watermelon (Charleston Gray)cpiwcgB317
CSPI04G11420Watermelon (97103) v1cpiwmB346
CSPI04G11420Cucurbita pepo (Zucchini)cpecpiB076
CSPI04G11420Cucurbita pepo (Zucchini)cpecpiB498
CSPI04G11420Bottle gourd (USVL1VR-Ls)cpilsiB257