CSPI04G10880 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G10880
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 9180996 .. 9181271 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATTTGCAGCTTTTTTTTATTGATTATCCTTGTGGCTCTTCCTGTAAATTTTGGAGATGGAAGTCAAGTAGGAGTTCTAGATTATGCTCAACTACTTTACTTTATCCATTGATTTTCCTGCTTGCGCTTTCAATTTATGGGAAGACGGGGGTAGTTTTTGTTGTTCGTAATGGCTTGGCCGATCCTCTTCTCCATGGAAAGTGCTTTGAGTATGAAGAAGACAAGAGGAACTCTGATTATGAGAGGGCAAATCTTCGTCTAAGCATTTGA

mRNA sequence

ATGGTGGATTTGCAGCTTTTTTTTATTGATTATCCTTGTGGCTCTTCCTGTAAATTTTGGAGATGGAAGTCAAGTAGGAGTTCTAGATTATGCTCAACTACTTTACTTTATCCATTGATTTTCCTGCTTGCGCTTTCAATTTATGGGAAGACGGGGGTAGTTTTTGTTGTTCGTAATGGCTTGGCCGATCCTCTTCTCCATGGAAAGTGCTTTGAGTATGAAGAAGACAAGAGGAACTCTGATTATGAGAGGGCAAATCTTCGTCTAAGCATTTGA

Coding sequence (CDS)

ATGGTGGATTTGCAGCTTTTTTTTATTGATTATCCTTGTGGCTCTTCCTGTAAATTTTGGAGATGGAAGTCAAGTAGGAGTTCTAGATTATGCTCAACTACTTTACTTTATCCATTGATTTTCCTGCTTGCGCTTTCAATTTATGGGAAGACGGGGGTAGTTTTTGTTGTTCGTAATGGCTTGGCCGATCCTCTTCTCCATGGAAAGTGCTTTGAGTATGAAGAAGACAAGAGGAACTCTGATTATGAGAGGGCAAATCTTCGTCTAAGCATTTGA
Homology
[Close]
BLAST of CSPI04G10880 vs. TrEMBL
Match: A0A0A0L189_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G187310 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.4e-45
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1 

Query: 1  MVDLQLFFIDYPCGSSCKFWRWKSSRSSRLCSTTLLYPLIFLLALSIYGKTGVVFVVRNG 60
          MVDLQLFFIDYPCGSSCKFWRWKSSRSSRLCSTTLLYPLIFLLALS+YGKTGVVFVVRNG
Sbjct: 1  MVDLQLFFIDYPCGSSCKFWRWKSSRSSRLCSTTLLYPLIFLLALSVYGKTGVVFVVRNG 60

Query: 61 LADPLLHGKCFEYEEDKRNSDYERANLRLSI 92
          LADPLLHGKC EYEEDKRNSDYERANLRLSI
Sbjct: 61 LADPLLHGKCSEYEEDKRNSDYERANLRLSI 91

[Close]
BLAST of CSPI04G10880 vs. TrEMBL
Match: A0A0A0L7R6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127200 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-18
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 38  PLIFLLALSIYGKTGVVFVVRNGLADPLLHGKCFEYEEDKRNSDYERANL 88
           PLIFLLALS+YGKTGVVFVVRNGLADPLLHGKC EYEEDKRNS YERANL
Sbjct: 187 PLIFLLALSVYGKTGVVFVVRNGLADPLLHGKCSEYEEDKRNSAYERANL 236

[Close]
BLAST of CSPI04G10880 vs. TrEMBL
Match: A0A0A0L3X9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127220 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.5e-07
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 36  LYPLIFLLALSIYGKTGVVFVVRNGLADPLLHGKCFEYEEDKRNSDYERANL 88
           + P IFL  LSIYG T VVF V NGL DPLL  KC + E D+++S Y RA L
Sbjct: 210 ILPSIFLFGLSIYGHTNVVFNVHNGLEDPLLPEKCLDQERDEKDSPYGRATL 261

[Close]
BLAST of CSPI04G10880 vs. TrEMBL
Match: A0A0A0L975_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127230 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-06
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 

Query: 36  LYPLIFLLALSIYGKTGVVFVVRNGLADPLLHGKCFEYEEDKRNSDYERA 86
           + P IFL  LSIYG+T +VF V NGL DPLL  KC   E D+++S Y RA
Sbjct: 198 ILPSIFLSGLSIYGRTNIVFNVHNGLEDPLLTEKCLNQERDEKDSPYGRA 247

[Close]
BLAST of CSPI04G10880 vs. NCBI nr
Match: gi|700198743|gb|KGN53901.1| (hypothetical protein Csa_4G187310 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 3.4e-45
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1 

Query: 1  MVDLQLFFIDYPCGSSCKFWRWKSSRSSRLCSTTLLYPLIFLLALSIYGKTGVVFVVRNG 60
          MVDLQLFFIDYPCGSSCKFWRWKSSRSSRLCSTTLLYPLIFLLALS+YGKTGVVFVVRNG
Sbjct: 1  MVDLQLFFIDYPCGSSCKFWRWKSSRSSRLCSTTLLYPLIFLLALSVYGKTGVVFVVRNG 60

Query: 61 LADPLLHGKCFEYEEDKRNSDYERANLRLSI 92
          LADPLLHGKC EYEEDKRNSDYERANLRLSI
Sbjct: 61 LADPLLHGKCSEYEEDKRNSDYERANLRLSI 91

[Close]
BLAST of CSPI04G10880 vs. NCBI nr
Match: gi|778677623|ref|XP_011650823.1| (PREDICTED: putative ABC transporter C family member 15 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 4.6e-18
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 38  PLIFLLALSIYGKTGVVFVVRNGLADPLLHGKCFEYEEDKRNSDYERANL 88
           PLIFLLALS+YGKTGVVFVVRNGLADPLLHGKC EYEEDKRNS YERANL
Sbjct: 187 PLIFLLALSVYGKTGVVFVVRNGLADPLLHGKCSEYEEDKRNSAYERANL 236

[Close]
BLAST of CSPI04G10880 vs. NCBI nr
Match: gi|659075628|ref|XP_008438245.1| (PREDICTED: putative ABC transporter C family member 15 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 38  PLIFLLALSIYGKTGVVFVVRNGLADPLLHGKCFEYEEDKRNSDYERANL 88
           PLIFLLALS+YGKTGVVFV RN LADPLLHGKC EYEEDKRNS YERANL
Sbjct: 196 PLIFLLALSVYGKTGVVFVSRNRLADPLLHGKCSEYEEDKRNSAYERANL 245

[Close]
BLAST of CSPI04G10880 vs. NCBI nr
Match: gi|778677616|ref|XP_011650822.1| (PREDICTED: putative ABC transporter C family member 15 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 36  LYPLIFLLALSIYGKTGVVFVVRNGLADPLLHGKCFEYEEDKRNSDYERANL 88
           + P IFL  LSIYG T VVF V NGL DPLL  KC + E D+++S Y RA L
Sbjct: 210 ILPSIFLFGLSIYGHTNVVFNVHNGLEDPLLPEKCLDQERDEKDSPYGRATL 261

[Close]
BLAST of CSPI04G10880 vs. NCBI nr
Match: gi|659075616|ref|XP_008438239.1| (PREDICTED: putative ABC transporter C family member 15 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 36  LYPLIFLLALSIYGKTGVVFVVRNGLADPLLHGKCFEYEEDKRNSDYERANL 88
           + P IFL  LSIYG T +VF V NGL DPLL  KC + E D+++S Y RA L
Sbjct: 200 ILPSIFLFGLSIYGHTNIVFNVHNGLEDPLLTEKCLDQERDEKDSPYGRATL 251

The following BLAST results are available for this feature:
BLAST of CSPI04G10880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G10880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L189_CUCSA2.4e-4597.80Uncharacterized protein OS=Cucumis sativus GN=Csa_4G187310 PE=4 SV=1[more]
A0A0A0L7R6_CUCSA3.2e-1894.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127200 PE=4 SV=1[more]
A0A0A0L3X9_CUCSA7.5e-0757.69Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127220 PE=4 SV=1[more]
A0A0A0L975_CUCSA3.7e-0656.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127230 PE=4 SV=1[more]
BLAST of CSPI04G10880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G10880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198743|gb|KGN53901.1|3.4e-4597.80hypothetical protein Csa_4G187310 [Cucumis sativus][more]
gi|778677623|ref|XP_011650823.1|4.6e-1894.00PREDICTED: putative ABC transporter C family member 15 [Cucumis sativus][more]
gi|659075628|ref|XP_008438245.1|1.9e-1690.00PREDICTED: putative ABC transporter C family member 15 [Cucumis melo][more]
gi|778677616|ref|XP_011650822.1|1.1e-0657.69PREDICTED: putative ABC transporter C family member 15 [Cucumis sativus][more]
gi|659075616|ref|XP_008438239.1|1.4e-0655.77PREDICTED: putative ABC transporter C family member 15 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G10880.1CSPI04G10880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G10880Csa4G187310Cucumber (Chinese Long) v2cpicuB183
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G10880Melon (DHL92) v3.5.1cpimeB323
CSPI04G10880Watermelon (97103) v1cpiwmB344
CSPI04G10880Melon (DHL92) v3.6.1cpimedB314
CSPI04G10880Cucumber (Gy14) v2cgybcpiB168
CSPI04G10880Cucumber (Chinese Long) v3cpicucB213
CSPI04G10880Wax gourdcpiwgoB412
CSPI04G10880Cucumber (Gy14) v1cgycpiB499