CSPI04G10850 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G10850
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 9150915 .. 9151294 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCTTCCCGTATCATCTGCTTTGCTCTTATTTTTGCAGGTTCTTTTTCTCTAATTTCCTGCACAAATACTATATTACCATGTGTTACAAAATCAATTATTCATTACAACACATATTAGATTGCTCATTTGTCTACCTGTATATTTACCTTTTTATGTTTTTTTATATAGTTGCATTGATGTTGGTGCTTCAAGACGTCTCAGCTTCCCAAAGATGTCAAGATGTTTTGTATAACACTGGGTGCGATCTCAATGACTGTGGAAAGAAATGTTGGGAGAAGCATCATACTGTTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATCTATGCTTGTTATTGCTTCTATGATTGCGGTGGTCAAAAGAATTGA

mRNA sequence

ATGACTTCTTCCCGTATCATCTGCTTTGCTCTTATTTTTGCAGTTGCATTGATGTTGGTGCTTCAAGACGTCTCAGCTTCCCAAAGATGTCAAGATGTTTTGTATAACACTGGGTGCGATCTCAATGACTGTGGAAAGAAATGTTGGGAGAAGCATCATACTGTTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATCTATGCTTGTTATTGCTTCTATGATTGCGGTGGTCAAAAGAATTGA

Coding sequence (CDS)

ATGACTTCTTCCCGTATCATCTGCTTTGCTCTTATTTTTGCAGTTGCATTGATGTTGGTGCTTCAAGACGTCTCAGCTTCCCAAAGATGTCAAGATGTTTTGTATAACACTGGGTGCGATCTCAATGACTGTGGAAAGAAATGTTGGGAGAAGCATCATACTGTTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATCTATGCTTGTTATTGCTTCTATGATTGCGGTGGTCAAAAGAATTGA
Homology
[Close]
BLAST of CSPI04G10850 vs. TrEMBL
Match: A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-39
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 1 

Query: 1  MTSSRIICFALIFAVALMLVLQDVSASQRCQDVLYNTGCDLNDCGKKCWEKHHTVSHQCI 60
          M SSRIICFALIFAVAL+L  QDVSA+QRCQDVLYNTGC+LNDCGKKCWEKHHTVSHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACYCFYDCGGQKN 83
          PTNPSQTIYACYCF+DCGGQKN
Sbjct: 61 PTNPSQTIYACYCFFDCGGQKN 82

[Close]
BLAST of CSPI04G10850 vs. TrEMBL
Match: A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-21
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 3  SSRIICFALIFAVALMLVLQDVSASQRCQDVLYNTGCDLNDCGKKCWEKHHTVSHQCIPT 62
          SS I+   LI AVA++ + Q   A+ RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYACYCFYDCG 79
          +P QTIYACYCFY CG
Sbjct: 66 DPDQTIYACYCFYTCG 80

[Close]
BLAST of CSPI04G10850 vs. TrEMBL
Match: A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.9e-12
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 1  MTSSRIICFALIFAVALMLVLQDVSASQRCQDVLYNTGCDLNDCGKKCWEKHHTVSHQCI 60
          ++S R+    +IFAV+++LV Q  SA  +CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSAL-KCQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACYCFYDC 78
           T+P+ T YACYCFY+C
Sbjct: 81 STDPTFTKYACYCFYNC 96

[Close]
BLAST of CSPI04G10850 vs. NCBI nr
Match: gi|700199739|gb|KGN54897.1| (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.3e-39
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 1 

Query: 1  MTSSRIICFALIFAVALMLVLQDVSASQRCQDVLYNTGCDLNDCGKKCWEKHHTVSHQCI 60
          M SSRIICFALIFAVAL+L  QDVSA+QRCQDVLYNTGC+LNDCGKKCWEKHHTVSHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACYCFYDCGGQKN 83
          PTNPSQTIYACYCF+DCGGQKN
Sbjct: 61 PTNPSQTIYACYCFFDCGGQKN 82

[Close]
BLAST of CSPI04G10850 vs. NCBI nr
Match: gi|700209891|gb|KGN64987.1| (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-21
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 3  SSRIICFALIFAVALMLVLQDVSASQRCQDVLYNTGCDLNDCGKKCWEKHHTVSHQCIPT 62
          SS I+   LI AVA++ + Q   A+ RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYACYCFYDCG 79
          +P QTIYACYCFY CG
Sbjct: 66 DPDQTIYACYCFYTCG 80

[Close]
BLAST of CSPI04G10850 vs. NCBI nr
Match: gi|700199652|gb|KGN54810.1| (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-11
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 1  MTSSRIICFALIFAVALMLVLQDVSASQRCQDVLYNTGCDLNDCGKKCWEKHHTVSHQCI 60
          ++S R+    +IFAV+++LV Q  SA  +CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSAL-KCQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACYCFYDC 78
           T+P+ T YACYCFY+C
Sbjct: 81 STDPTFTKYACYCFYNC 96

[Close]
BLAST of CSPI04G10850 vs. NCBI nr
Match: gi|802775625|ref|XP_012090834.1| (PREDICTED: defensin-like protein 156 [Jatropha curcas])

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1 

Query: 9  FALIFAVALMLVLQDVSASQRCQDVLYNTGCDLNDCGKKCWEKHHTVSHQCIPTNPSQTI 68
          F L   +++  ++    A ++CQ+VL+  GC L DC K+C+EKH+     CIP N ++  
Sbjct: 11 FILFLIISVSSMVPQARAQKKCQEVLHEIGCVLEDCKKECYEKHNENGGVCIP-NQAKED 70

Query: 69 YACYCFYDCG 79
          Y+CYCF+ CG
Sbjct: 71 YSCYCFWTCG 79

[Close]
BLAST of CSPI04G10850 vs. NCBI nr
Match: gi|743907321|ref|XP_011047085.1| (PREDICTED: putative defensin-like protein 165 [Populus euphratica])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 10 ALIFAVALM-------LVLQDVSASQRCQDVLYNTGCDLNDCGKKCWEKHHTV--SHQCI 69
          ALIF+V  M       +V    +  +RC+++LY  GC L +CGKKC+EK+     + +CI
Sbjct: 14 ALIFSVTTMAPPVSATVVTGKETEQRRCEEILYRKGCTLLECGKKCYEKYMNKGGNGKCI 73

Query: 70 PTNPSQTIYACYCFYDC 78
           +N   T YACYCF++C
Sbjct: 74 -SNAEMTRYACYCFWNC 89

The following BLAST results are available for this feature:
BLAST of CSPI04G10850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G10850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2R3_CUCSA2.3e-3991.46Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1[more]
A0A0A0LVZ5_CUCSA1.6e-2164.47Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1[more]
A0A0A0KYP7_CUCSA6.9e-1248.05Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1[more]
BLAST of CSPI04G10850 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G10850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199739|gb|KGN54897.1|3.3e-3991.46hypothetical protein Csa_4G576870 [Cucumis sativus][more]
gi|700209891|gb|KGN64987.1|2.4e-2164.47hypothetical protein Csa_1G172580 [Cucumis sativus][more]
gi|700199652|gb|KGN54810.1|1.0e-1148.05hypothetical protein Csa_4G507400 [Cucumis sativus][more]
gi|802775625|ref|XP_012090834.1|2.3e-0840.00PREDICTED: defensin-like protein 156 [Jatropha curcas][more]
gi|743907321|ref|XP_011047085.1|1.3e-0641.56PREDICTED: putative defensin-like protein 165 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010851SLR1_pollen-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G10850.1CSPI04G10850.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851S locus-related glycoprotein 1 binding pollen coat proteinPFAMPF07333SLR1-BPcoord: 27..77
score: 2.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G10850MELO3C033314.2Melon (DHL92) v3.6.1cpimedB315
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G10850Cucumber (Chinese Long) v3cpicucB213
CSPI04G10850Wax gourdcpiwgoB412
CSPI04G10850Watermelon (97103) v1cpiwmB344
CSPI04G10850Cucumber (Gy14) v2cgybcpiB168