CSPI04G10590 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G10590
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Exosome complex exonuclease rrp43, putative
Location	Chr4 : 8809516 .. 8811081 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATGATCAATGGTTATTTTATTATTTGAAAATTTTAATAATTTCTCTTTATAAGCTGAAAAATGTTAATGAGATTTTTTTTCCATCTTGTTTGGTAATTTGGTAGGTTGAACTACTTTTAAAACGATTAGTACCCTTTTTCTTTGTTGAGCCGTATTTTAAACTCCTTCCTGGTTTATATTTTTAGTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTGTCTGTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAATAAAGAGAACAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACGTGCCTACTCCACAAGAAGTACATCTTGGCCGATCCTACTGCAGAGGAGGAGTCCGTCATGGAAACTATTGTAACTGTGGTTTTGGATTCATCAGGTCAACTTGTTTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCTTATACATCAGCTGTTCAGGTTGGTCTTTCCTTTCTCCCACAACTTTATTGATGGATTGGTTCCGGATTTTGTCATTCTTCACACTTTCCCCGTCTCTTAAGTTTGGATTTTCATGAACAATCATTTAGGGCTCGTTTAGTAATTAATTGGTTTTGAAAATTAAACCTATTTTGTATCAATTTCTTACCATGGTTTCATATTTCTTGAGTAAAAGAGTGAATTTTGAACCAAATTTAAAAAGCAAGTACAAATTTTTAAATATTTTTTATTAGTTTTTAAAACTTAATTTGGCTTTTGGAAACATTGGCAGAAAGTAGATAAAAAAGCAACCGGTAGAAAGTAGATAAAAGAGCAAGAAATTTAGAACTGAAAGGGGTGTTTATAAGGTTAATATTTATAAACTAAAAACTAGGGTATTAAAGAGGACATTTTTAAGTGTTTAATTTTTTAAAAGTATCCTAGAAGATTTACAAAATGCTTGAGTCCATCTCTAATTTGTACTTGTCAGTTTACTCAGCAAAGGAACTCCAAAAATAAGAATTGACTTGATAATTATATTGTTATTATAATCATCATCAATTTTCCAATATATAACTTTTTTTTAATATAAAAAATACCATCCATAAGCAAAAATTTCTCTTTTGCTTGTCTTGCTTTAGGATCCACTTCTTTAATTCTTATAAACTAATGTTTGAATTTGGTTAAGGATGCCTTTGAGAGTGATTTTGATATGAGACTTTTGTCGAGTTTTCAGTCATTCAAGTTTGTTTGTTATTTTTTTATATATAAAATGCATAAAATCAAACATGAAATTGATTACTAATAATGAAAAAGTTATGTTTGTAAGTGATTTTGAACCCATCAAAAATCATTTTAACAATTTAAAAGGCTCTCAAACATGCTCTATCTAATAACTATATTATCATAGTTGTGATTTACTTGTCAAAGTTACGGTTTAAACGACAAGTCATTCCATATGCTCTAATCTTTGTCCGATGGCGTGGTTGCAGGATTGCATTGCATTGACCAGACAAAGATCGAAAGAACTACAGATAATTTTAGATGAAGCAATTTCTGGTATGGAAATCGACTAA

mRNA sequence

ATGCCAATGATCAATGTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTGTCTGTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAATAAAGAGAACAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACGTGCCTACTCCACAAGAAGTACATCTTGGCCGATCCTACTGCAGAGGAGGAGTCCGTCATGGAAACTATTGTAACTGTGGTTTTGGATTCATCAGGTCAACTTGTTTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCTTATACATCAGCTGTTCAGGATTGCATTGCATTGACCAGACAAAGATCGAAAGAACTACAGATAATTTTAGATGAAGCAATTTCTGGTATGGAAATCGACTAA

Coding sequence (CDS)

ATGCCAATGATCAATGTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTGTCTGTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAATAAAGAGAACAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACGTGCCTACTCCACAAGAAGTACATCTTGGCCGATCCTACTGCAGAGGAGGAGTCCGTCATGGAAACTATTGTAACTGTGGTTTTGGATTCATCAGGTCAACTTGTTTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCTTATACATCAGCTGTTCAGGATTGCATTGCATTGACCAGACAAAGATCGAAAGAACTACAGATAATTTTAGATGAAGCAATTTCTGGTATGGAAATCGACTAA

Homology

[Close]

BLAST of CSPI04G10590 vs. Swiss-Prot
Match: EXOS8_HUMAN (Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-08
Identity = 38/127 (29.92%), Postives = 67/127 (52.76%), Query Frame = 1


Query: 5   NVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLT-CLLHKKYILA 64
           NVQ+P V +N++  +  V       N +K+        L + + P + +  +     ++ 
Sbjct: 162 NVQLPEVTINEETALAEV-------NLKKKSY------LNIRTHPVATSFAVFDDTLLIV 221

Query: 65  DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD 124
           DPT EEE +    +T+V+D  G+L   +KPGGS L   + +QDC++    R KE++ ++D
Sbjct: 222 DPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMD 274

Query: 125 EAISGME 131
           E I  M+
Sbjct: 282 EVIKSMK 274

[Close]

BLAST of CSPI04G10590 vs. TrEMBL
Match: A0A0A0KYC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G165890 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.0e-66
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MPMINVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKY 60
           MPMINVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKY
Sbjct: 1   MPMINVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKY 60

Query: 61  ILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQI 120
           ILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQI
Sbjct: 61  ILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQI 120

Query: 121 ILDEAISGMEID 133
           ILDEAISGMEID
Sbjct: 121 ILDEAISGMEID 132

[Close]

BLAST of CSPI04G10590 vs. TrEMBL
Match: U5FN09_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05590g PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-49
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 1


Query: 5   NVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILAD 64
           ++QIP+V+LNDDGK+V V EE+ G   EKEPVNKE RKL L+SIPFSLTC+LHK YILAD
Sbjct: 196 HLQIPIVSLNDDGKIVLVSEEDEGAKLEKEPVNKEKRKLTLSSIPFSLTCILHKNYILAD 255

Query: 65  PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE 124
           PTAEEES+MET+VTVVLDSS +LVSFYKPGGSV AYTSAV+DC+ALTRQR KELQ ILDE
Sbjct: 256 PTAEEESIMETLVTVVLDSSARLVSFYKPGGSVFAYTSAVKDCVALTRQRVKELQEILDE 315

Query: 125 AISGMEID 133
           AISGME D
Sbjct: 316 AISGMETD 323

[Close]

BLAST of CSPI04G10590 vs. TrEMBL
Match: B9H9U8_POPTR (3' exoribonuclease domain 1-containing family protein OS=Populus trichocarpa GN=POPTR_0006s04970g PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 6.7e-49
Identity = 101/127 (79.53%), Postives = 112/127 (88.19%), Query Frame = 1


Query: 6   VQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADP 65
           VQIP+V+LNDDGK+V V EE+ G   E+EPVNKE RKL L+SIPFSLTC+LHK YILADP
Sbjct: 192 VQIPIVSLNDDGKIVLVSEEDDGTKLEEEPVNKEKRKLTLSSIPFSLTCILHKNYILADP 251

Query: 66  TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEA 125
           TAEEES+MET+VTVVLDSS +LVSFYKPGG VLA TSAVQDC+ALTRQR KELQ ILDE 
Sbjct: 252 TAEEESIMETLVTVVLDSSSRLVSFYKPGGPVLAQTSAVQDCVALTRQRVKELQDILDET 311

Query: 126 ISGMEID 133
           ISGMEID
Sbjct: 312 ISGMEID 318

[Close]

BLAST of CSPI04G10590 vs. TrEMBL
Match: U5G927_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04970g PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 8.7e-49
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 1


Query: 5   NVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILAD 64
           ++QIP+V+LNDDGK+V V EE+ G   E+EPVNKE RKL L+SIPFSLTC+LHK YILAD
Sbjct: 176 HLQIPIVSLNDDGKIVLVSEEDDGTKLEEEPVNKEKRKLTLSSIPFSLTCILHKNYILAD 235

Query: 65  PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE 124
           PTAEEES+MET+VTVVLDSS +LVSFYKPGG VLA TSAVQDC+ALTRQR KELQ ILDE
Sbjct: 236 PTAEEESIMETLVTVVLDSSSRLVSFYKPGGPVLAQTSAVQDCVALTRQRVKELQDILDE 295

Query: 125 AISGMEID 133
            ISGMEID
Sbjct: 296 TISGMEID 303

[Close]

BLAST of CSPI04G10590 vs. TrEMBL
Match: B9T1F1_RICCO (Exosome complex exonuclease rrp43, putative OS=Ricinus communis GN=RCOM_0374000 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.3e-48
Identity = 100/128 (78.12%), Postives = 112/128 (87.50%), Query Frame = 1


Query: 5   NVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILAD 64
           N+QIP+V+LNDDGKVV V +E  G   EKE VNKE RKL L S+PFSLTC+LHK YILAD
Sbjct: 176 NLQIPIVSLNDDGKVVVVSDENEGGKREKEAVNKEKRKLTLRSLPFSLTCVLHKNYILAD 235

Query: 65  PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE 124
           PTAEEES+MET+VTVVLDSS +LVSFYKPGG VLAYTSAVQDC+ALTRQR KELQ ILDE
Sbjct: 236 PTAEEESIMETLVTVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQNILDE 295

Query: 125 AISGMEID 133
           A+SGM+ID
Sbjct: 296 ALSGMQID 303

[Close]

BLAST of CSPI04G10590 vs. TAIR10
Match: AT1G60080.1 (AT1G60080.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 157.9 bits (398), Expect = 4.3e-39
Identity = 82/131 (62.60%), Postives = 104/131 (79.39%), Query Frame = 1


Query: 5   NVQIPVVALNDDGKVVFVCEEEGGENF---EKEPVNKENRKLKLNSIPFSLTCLLHKKYI 64
           N+QIP+VALND+G++V V  E+  +N    EKE VNKE RKL L +IPFSLTC+LHK YI
Sbjct: 176 NLQIPIVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYI 235

Query: 65  LADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQII 124
           LADPT EEES+M+T+VTVVLDSS Q+VSFYK GG+ LAY+SA++ C+ L R+R+KEL+ I
Sbjct: 236 LADPTTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQI 295

Query: 125 LDEAISGMEID 133
           L E    M+ID
Sbjct: 296 LGE----MDID 302

[Close]

BLAST of CSPI04G10590 vs. NCBI nr
Match: gi|700198686|gb|KGN53844.1| (hypothetical protein Csa_4G165890 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 8.6e-66
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MPMINVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKY 60
           MPMINVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKY
Sbjct: 1   MPMINVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKY 60

Query: 61  ILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQI 120
           ILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQI
Sbjct: 61  ILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQI 120

Query: 121 ILDEAISGMEID 133
           ILDEAISGMEID
Sbjct: 121 ILDEAISGMEID 132

[Close]

BLAST of CSPI04G10590 vs. NCBI nr
Match: gi|449463354|ref|XP_004149399.1| (PREDICTED: exosome complex component RRP43 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 1.2e-62
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 5   NVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILAD 64
           ++QIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILAD
Sbjct: 177 HLQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILAD 236

Query: 65  PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE 124
           PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE
Sbjct: 237 PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE 296

Query: 125 AISGMEID 133
           AISGMEID
Sbjct: 297 AISGMEID 304

[Close]

BLAST of CSPI04G10590 vs. NCBI nr
Match: gi|659121683|ref|XP_008460773.1| (PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 2.4e-60
Identity = 122/128 (95.31%), Postives = 126/128 (98.44%), Query Frame = 1


Query: 5   NVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILAD 64
           ++QIPVVALNDDG+VVFV EEEGGENFEKEPVNKE RKLKLNS+PFSLTCLLHKKYILAD
Sbjct: 177 HLQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILAD 236

Query: 65  PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE 124
           PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE
Sbjct: 237 PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE 296

Query: 125 AISGMEID 133
           AISGMEID
Sbjct: 297 AISGMEID 304

[Close]

BLAST of CSPI04G10590 vs. NCBI nr
Match: gi|659121681|ref|XP_008460772.1| (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 2.4e-60
Identity = 122/128 (95.31%), Postives = 126/128 (98.44%), Query Frame = 1


Query: 5   NVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILAD 64
           ++QIPVVALNDDG+VVFV EEEGGENFEKEPVNKE RKLKLNS+PFSLTCLLHKKYILAD
Sbjct: 189 HLQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILAD 248

Query: 65  PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE 124
           PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE
Sbjct: 249 PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE 308

Query: 125 AISGMEID 133
           AISGMEID
Sbjct: 309 AISGMEID 316

[Close]

BLAST of CSPI04G10590 vs. NCBI nr
Match: gi|566208874|ref|XP_006373782.1| (hypothetical protein POPTR_0016s05590g [Populus trichocarpa])

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-49
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 1


Query: 5   NVQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILAD 64
           ++QIP+V+LNDDGK+V V EE+ G   EKEPVNKE RKL L+SIPFSLTC+LHK YILAD
Sbjct: 196 HLQIPIVSLNDDGKIVLVSEEDEGAKLEKEPVNKEKRKLTLSSIPFSLTCILHKNYILAD 255

Query: 65  PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDE 124
           PTAEEES+MET+VTVVLDSS +LVSFYKPGGSV AYTSAV+DC+ALTRQR KELQ ILDE
Sbjct: 256 PTAEEESIMETLVTVVLDSSARLVSFYKPGGSVFAYTSAVKDCVALTRQRVKELQEILDE 315

Query: 125 AISGMEID 133
           AISGME D
Sbjct: 316 AISGMETD 323

The following BLAST results are available for this feature:

BLAST of CSPI04G10590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EXOS8_HUMAN	3.7e-08	29.92	Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1	[more]

BLAST of CSPI04G10590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYC2_CUCSA	6.0e-66	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G165890 PE=4 SV=1	[more]
U5FN09_POPTR	1.3e-49	78.91	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05590g PE=4 SV=1	[more]
B9H9U8_POPTR	6.7e-49	79.53	3' exoribonuclease domain 1-containing family protein OS=Populus trichocarpa GN=...	[more]
U5G927_POPTR	8.7e-49	78.13	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04970g PE=4 SV=1	[more]
B9T1F1_RICCO	4.3e-48	78.13	Exosome complex exonuclease rrp43, putative OS=Ricinus communis GN=RCOM_0374000 ...	[more]

BLAST of CSPI04G10590 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60080.1	4.3e-39	62.60	3'-5'-exoribonuclease family protein	[more]

BLAST of CSPI04G10590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198686\|gb\|KGN53844.1\|	8.6e-66	100.00	hypothetical protein Csa_4G165890 [Cucumis sativus]	[more]
gi\|449463354\|ref\|XP_004149399.1\|	1.2e-62	98.44	PREDICTED: exosome complex component RRP43 [Cucumis sativus]	[more]
gi\|659121683\|ref\|XP_008460773.1\|	2.4e-60	95.31	PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo]	[more]
gi\|659121681\|ref\|XP_008460772.1\|	2.4e-60	95.31	PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]	[more]
gi\|566208874\|ref\|XP_006373782.1\|	1.9e-49	78.91	hypothetical protein POPTR_0016s05590g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015847	ExoRNase_PH_dom2

Vocabulary: **Cellular Component**
Term	Definition
GO:0000178	exosome (RNase complex)

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing
GO:0006401	RNA catabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006401	RNA catabolic process
biological_process	GO:0006396	RNA processing
biological_process	GO:0009058	biosynthetic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0004527	exonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G10590.1	CSPI04G10590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 49..97 score: 9.
IPR015847	Exoribonuclease, phosphorolytic domain 2	unknown	SSF55666	Ribonuclease PH domain 2-like	coord: 43..126 score: 3.32
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 5..132 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G10590	Cla002766	Watermelon (97103) v1	cpiwmB340
CSPI04G10590	Csa4G165890	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G10590	ClCG04G000120	Watermelon (Charleston Gray)	cpiwcgB320
CSPI04G10590	Cla97C04G068550	Watermelon (97103) v2	cpiwmbB311
CSPI04G10590	Cucsa.374740	Cucumber (Gy14) v1	cgycpiB553
CSPI04G10590	Cp4.1LG10g11590	Cucurbita pepo (Zucchini)	cpecpiB077

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G10590	Melon (DHL92) v3.6.1	cpimedB315
CSPI04G10590	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G10590	Silver-seed gourd	carcpiB0221
CSPI04G10590	Silver-seed gourd	carcpiB0222
CSPI04G10590	Silver-seed gourd	carcpiB0318
CSPI04G10590	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G10590	Wax gourd	cpiwgoB397
CSPI04G10590	Cucurbita maxima (Rimu)	cmacpiB674
CSPI04G10590	Cucurbita maxima (Rimu)	cmacpiB681
CSPI04G10590	Cucurbita maxima (Rimu)	cmacpiB885
CSPI04G10590	Cucurbita moschata (Rifu)	cmocpiB665
CSPI04G10590	Cucurbita moschata (Rifu)	cmocpiB674
CSPI04G10590	Cucurbita moschata (Rifu)	cmocpiB865
CSPI04G10590	Melon (DHL92) v3.5.1	cpimeB332
CSPI04G10590	Cucurbita pepo (Zucchini)	cpecpiB069
CSPI04G10590	Cucurbita pepo (Zucchini)	cpecpiB490
CSPI04G10590	Bottle gourd (USVL1VR-Ls)	cpilsiB259