CSPI04G10400 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G10400
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	Chr4 : 8524283 .. 8525507 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCTACCGTTCATCTATGTAGTTTAACAGCCCCAGCATTAGTAGATATATTGGTGTTCAAGGAAGAAGTGGAAGGGGATGAAAAGTTGAGCAAGATTATGACCGAATTGCAAACAGAGGAAAAAGACAAAGAAAGTAAATTTTCTATTCAACAAGGGATGCTAAGATACAAGGACATGTTAGTATTGTCGAAGACTTCAGCCTTGATTCCAACAATATTACACACCTATCACAACTCTGTGTTAGGAGGGCATTCTGGTCTTTTACATGCATATAAGAGGTTAACTGGTGAGCTGTACTGGAAAGGAATGAAATAAGATATTAAGAAATACTGTGATAAGTGTGTGGCATGTTAGAAAAAACAAGTCCTTGGCACAACTCCAGCAGGGCTATTGCTACCACTACAAATTCCAAATAGTATTTGAAGTGATATATCAATTGATTTTTTTGAAGGTCTACCAAGATCGAATGGGTTTGAAGTCATATTGGTGGTAGTTGATAGGTTCAGCAAATATGAACACTTCTTATCCCTGAAGCACCCTTTCATGGAAAAGACAGTGGCAGAGTTGTTTGTGAAAGAGATCATGCAGCTACATGGTTATCCCAAGTCAATAGTGTATGAACAGAGACTAGATATTCTTGAGCAATTTCTGGAACCAGATGTTTAAGATGTCTGGTACTAAATTGAATTGAAGTACAGCTTACCACCCACAAACAGAGGGCCAAACTAAAGTGGTCAACAAGGGAGTTAAAACCTATTTAAGGGGTTTCTATGGTGAAGGGCCGAAAGAATGGACAAGATGGTTACACTGGGATGAGTATTGGTATAATACTACATTCCAGAGATACCTAGGAATCACTCCTTTCTATGCAATGTAAGGTTAAATGCCTCCCCTATGAGTGTATTATGGTGATCGTTATACTCCTAACTCAGCTCTAGATGAGCAACTCTAGGCAAGAGATGACGCTTTGGGAGTATTAAAGAAGCATCTTCGAACTGCCTAAGATAAAATGAAAAAGAATGTAGACTTGAAGCATCGAGATGTGGAGTATGCAGTTGGAGATATGGTGTTTTTGAAGATTAGGCCTCGTAGACATATCTCCTTCCGGAAGAAAAAGAATGAGAAATTATCTCATAAATTCTTTGGGTCTTATAAGATTGTGGAAAGAAGCGTTGAGATATGGAGTATGCCGTTGGAGTATGGTGTTTTTGAAGATTAG

mRNA sequence

ATGCCTCCTACCGTTCATCTATGTAGTTTAACAGCCCCAGCATTAGTAGATATATTGGTGTTCAAGGAAGAAGTGGAAGGGGATGAAAAGTTGAGCAAGATTATGACCGAATTGCAAACAGAGGAAAAAGACAAAGAAAGTAAATTTTCTATTCAACAAGGGATGCTAAGATACAAGGACATGTTAGTATTGTCGAAGACTTCAGCCTTGATTCCAACAATATTACACACCTATCACAACTCTGTGTTAGGAGGGCATTCTGGTCTTTTACATGCATATAAGAGGTTAACTGGTCTACCAAGATCGAATGGGTTTGAAGTCATATTGGTGGTAGTTGATAGGTTCAGCAAATATGAACACTTCTTATCCCTGAAGCACCCTTTCATGGAAAAGACAGTGGCAGAGTTGTTTGTGAAAGAGATCATGCAGCTACATGGTTATCCCAAGTCAATAGTGTATGAACAGAGACTAGATATTCTTGAGCAATTTCTGGAACCAGATGGCCGAAAGAATGGACAAGATGGTTACACTGGGATGAGTATTGATAAAATGAAAAAGAATGTAGACTTGAAGCATCGAGATGTGGAGTATGCAGTTGGAGATATGGTGTTTTTGAAGATTAGGCCTCGTAGACATATCTCCTTCCGGAAGAAAAAGAATGAGAAATTATCTCATAAATTCTTTGGGTCTTATAAGATTGTGGAAAGAAGCGTTGAGATATGGAGTATGCCGTTGGAGTATGGTGTTTTTGAAGATTAG

Coding sequence (CDS)

ATGCCTCCTACCGTTCATCTATGTAGTTTAACAGCCCCAGCATTAGTAGATATATTGGTGTTCAAGGAAGAAGTGGAAGGGGATGAAAAGTTGAGCAAGATTATGACCGAATTGCAAACAGAGGAAAAAGACAAAGAAAGTAAATTTTCTATTCAACAAGGGATGCTAAGATACAAGGACATGTTAGTATTGTCGAAGACTTCAGCCTTGATTCCAACAATATTACACACCTATCACAACTCTGTGTTAGGAGGGCATTCTGGTCTTTTACATGCATATAAGAGGTTAACTGGTCTACCAAGATCGAATGGGTTTGAAGTCATATTGGTGGTAGTTGATAGGTTCAGCAAATATGAACACTTCTTATCCCTGAAGCACCCTTTCATGGAAAAGACAGTGGCAGAGTTGTTTGTGAAAGAGATCATGCAGCTACATGGTTATCCCAAGTCAATAGTGTATGAACAGAGACTAGATATTCTTGAGCAATTTCTGGAACCAGATGGCCGAAAGAATGGACAAGATGGTTACACTGGGATGAGTATTGATAAAATGAAAAAGAATGTAGACTTGAAGCATCGAGATGTGGAGTATGCAGTTGGAGATATGGTGTTTTTGAAGATTAGGCCTCGTAGACATATCTCCTTCCGGAAGAAAAAGAATGAGAAATTATCTCATAAATTCTTTGGGTCTTATAAGATTGTGGAAAGAAGCGTTGAGATATGGAGTATGCCGTTGGAGTATGGTGTTTTTGAAGATTAG

Homology

[Close]

BLAST of CSPI04G10400 vs. TrEMBL
Match: E5GBA8_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.6e-30
Identity = 88/232 (37.93%), Postives = 129/232 (55.60%), Query Frame = 1


Query: 10  LTAPALVDILVFKEEVEGDEKLSKIMTELQTEEKDKESKFSIQQGMLRYKDMLVLSKTSA 69
           +T P+L+DI V ++EV+ D+KL K M +      D    + ++QG   Y+  LVLSKTS+
Sbjct: 459 ITVPSLLDIKVVEKEVQEDKKL-KAMLDRIVANPDCIPHYMVRQGKQFYRGRLVLSKTSS 518

Query: 70  LIPTILHTYHNSVLGGHSGLLHAYKRL----------------TGLPRSN---------- 129
           LIPTILHT+++ V+GGHSG L  YKR+                T    S+          
Sbjct: 519 LIPTILHTFNDLVIGGHSGQLRTYKRIAAELFWERMKNDIKLWTATTSSHPQPYLGGYIH 578

Query: 130 ----GFEVILVVVDRFSKYEHFLSLKHPFMEKTVAELFVKEIMQLHGYPKSIVYEQRLDI 189
               GF+ +LVVVDR SK  HF++L HPF  KTVA +F+K++++LHGYP+ I   +    
Sbjct: 579 GFCTGFDTVLVVVDRVSKNAHFITLGHPFSAKTVAMVFIKKVVRLHGYPRLIASNRDRVF 638

Query: 190 LEQFLEPDGRKNGQDGYTGMSIDKMKKNVDLKHRDVEYAVGDMVFLKIRPRR 212
           L        R      +   + ++MKK  D+ HRDV + + D V+LK++P R
Sbjct: 639 LSHIWTELFRLQALKRHLQHAQEQMKKFADVHHRDVVFDIEDWVYLKLQPYR 689

[Close]

BLAST of CSPI04G10400 vs. TrEMBL
Match: A0A0B2Q8F5_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_017962 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.4e-25
Identity = 70/155 (45.16%), Postives = 98/155 (63.23%), Query Frame = 1


Query: 10  LTAPALVDILVFKEEVEGDEKLSKIMTELQTEEKDKESKFSIQQGMLRYKDMLVLSKTSA 69
           L+ P  +D     +EV  D  L K + ELQ    D ++ F++QQG+L Y+  LVLS  S 
Sbjct: 56  LSYPTWLDGEKLLQEVRQDTMLQKTVKELQMNP-DLKAGFTVQQGILFYQGRLVLSPNSP 115

Query: 70  LIPTILHTYHNSVLGGHSGLLHAYKRLTGLPRSNGFEVILVVVDRFSKYEHFLSLKHPFM 129
            IP +L  +H + + GHSG L  YKRL     + GFE +LVVVDR SKY HFL LKHP+ 
Sbjct: 116 SIPLLLKEFHETPMEGHSGFLRTYKRLAA---NLGFEAVLVVVDRLSKYSHFLLLKHPYT 175

Query: 130 EKTVAELFVKEIMQLHGYPKSIVYEQRLDILEQFL 165
            K+VAELFV+E+++LHG P SI+ ++    ++ +L
Sbjct: 176 AKSVAELFVREVVRLHGIPMSIISDRDPIFVKSYL 206

[Close]

BLAST of CSPI04G10400 vs. TrEMBL
Match: A0A0B2QIQ3_GLYSO (Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Glycine soja GN=glysoja_042549 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 64/156 (41.03%), Postives = 98/156 (62.82%), Query Frame = 1


Query: 8   CSLTAPALVDILVFKEEVEGDEKLSKIMTELQTEEKDKESKFSIQQGMLRYKDMLVLSKT 67
           C++T   + D   + EE++ D+KL KIM +L  +       ++++   L YK+ LVLSK+
Sbjct: 50  CAMTVLQIHDFEEWTEEIKQDDKLQKIMQDLIIDPASHMG-YTLRDQKLFYKEKLVLSKS 109

Query: 68  SALIPTILHTYHNSVLGGHSGLLHAYKRLT--------GLPRSNGFEVILVVVDRFSKYE 127
           S+ IP IL  +H+S++GGHSG+   YKR+         GLP+S   + ILVVVDR +KY 
Sbjct: 110 SSRIPIILKEFHSSLVGGHSGIFKTYKRIANISMDFIGGLPKSKEKDTILVVVDRLTKYA 169

Query: 128 HFLSLKHPFMEKTVAELFVKEIMQLHGYPKSIVYEQ 156
           HF+ L HPF    VA  F+++I++LHG+  SIV ++
Sbjct: 170 HFIPLGHPFTATEVATTFLQKIVRLHGFLPSIVSDR 204

[Close]

BLAST of CSPI04G10400 vs. TrEMBL
Match: A0A087HE47_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G368400 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.5e-22
Identity = 56/145 (38.62%), Postives = 90/145 (62.07%), Query Frame = 1


Query: 96  LTGLPRSNGFEVILVVVDRFSKYEHFLSLKHPFMEKTVAELFVKEIMQLHGYPKSIVYEQ 155
           + GLP+S G++VI+VVVD  +K  HF  LKHPF+   VA LF++E+++LHG+PK++V ++
Sbjct: 382 IEGLPKSEGYDVIMVVVDMLTKSAHFSRLKHPFVASEVALLFIQEVVRLHGFPKTLVSDR 441

Query: 156 RLDILEQFLEPDGRKNGQDGYTGMSIDKMKKNVDLKHRDVEYAVGDMVFLKIRPRRHISF 215
              IL+                  +   MK+  D   R+VE+ VGDMV+LK++P R  S 
Sbjct: 442 DKHILK------------------AQQAMKRQADKHRREVEFQVGDMVYLKLKPYRQKSL 501

Query: 216 RKKKNEKLSHKFFGSYKIVERSVEI 241
            ++ NEKLS +++  Y+++ R  E+
Sbjct: 502 ARRSNEKLSARYYSPYEVLARVGEV 508

[Close]

BLAST of CSPI04G10400 vs. TrEMBL
Match: A0A087G0A8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs43195U000200 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.6e-20
Identity = 64/174 (36.78%), Postives = 96/174 (55.17%), Query Frame = 1


Query: 7    LCSLTAPALVDILVFKEEVEGDEKLSKIMTELQTEEKDKESKFSIQQGMLRYKDMLVLSK 66
            L +L+ PA + + +   EV+ D +  KI  E+   + D    +S+ QG L  +  LV+ K
Sbjct: 1001 LFALSVPAAIQLEMITAEVDKDAESRKIKEEV-LGDVDAHPGYSVVQGRLLKQGKLVIPK 1060

Query: 67   TSALIPTILHTYHNSVLGGHSGLL-HAYKRLT------------------------GLPR 126
             S L+  +LH +H++ +GGH     H Y  L                         GLP+
Sbjct: 1061 ASPLVGVLLHEFHSTKMGGHGVCQKHKYSSLAPAGLLQPLPIPDKVWEDISLDFVEGLPK 1120

Query: 127  SNGFEVILVVVDRFSKYEHFLSLKHPFMEKTVAELFVKEIMQLHGYPKSIVYEQ 156
            S GF+V++VVVDR SKY HFL LKHP+    VA LFV+EI++LHG+P++IV ++
Sbjct: 1121 SEGFDVVMVVVDRLSKYAHFLKLKHPYEASAVALLFVQEIVRLHGFPRTIVSDR 1173

[Close]

BLAST of CSPI04G10400 vs. NCBI nr
Match: gi|307135885|gb|ADN33750.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 141.4 bits (355), Expect = 2.2e-30
Identity = 88/232 (37.93%), Postives = 129/232 (55.60%), Query Frame = 1


Query: 10  LTAPALVDILVFKEEVEGDEKLSKIMTELQTEEKDKESKFSIQQGMLRYKDMLVLSKTSA 69
           +T P+L+DI V ++EV+ D+KL K M +      D    + ++QG   Y+  LVLSKTS+
Sbjct: 459 ITVPSLLDIKVVEKEVQEDKKL-KAMLDRIVANPDCIPHYMVRQGKQFYRGRLVLSKTSS 518

Query: 70  LIPTILHTYHNSVLGGHSGLLHAYKRL----------------TGLPRSN---------- 129
           LIPTILHT+++ V+GGHSG L  YKR+                T    S+          
Sbjct: 519 LIPTILHTFNDLVIGGHSGQLRTYKRIAAELFWERMKNDIKLWTATTSSHPQPYLGGYIH 578

Query: 130 ----GFEVILVVVDRFSKYEHFLSLKHPFMEKTVAELFVKEIMQLHGYPKSIVYEQRLDI 189
               GF+ +LVVVDR SK  HF++L HPF  KTVA +F+K++++LHGYP+ I   +    
Sbjct: 579 GFCTGFDTVLVVVDRVSKNAHFITLGHPFSAKTVAMVFIKKVVRLHGYPRLIASNRDRVF 638

Query: 190 LEQFLEPDGRKNGQDGYTGMSIDKMKKNVDLKHRDVEYAVGDMVFLKIRPRR 212
           L        R      +   + ++MKK  D+ HRDV + + D V+LK++P R
Sbjct: 639 LSHIWTELFRLQALKRHLQHAQEQMKKFADVHHRDVVFDIEDWVYLKLQPYR 689

[Close]

BLAST of CSPI04G10400 vs. NCBI nr
Match: gi|659113889|ref|XP_008456800.1| (PREDICTED: uncharacterized protein LOC103496640 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 6.7e-27
Identity = 86/244 (35.25%), Postives = 135/244 (55.33%), Query Frame = 1


Query: 20  VFKEEVEGDEK-----LSKIMTELQTEEKDKESKFSIQQGML-RYKDMLVLSKTSALIPT 79
           +F + V G          ++ +EL  E    + K   +  ++ ++   L LS    L+P 
Sbjct: 595 IFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLLVPQ 654

Query: 80  -ILHTYHNSVLGGHSGLLHAYKRLTGLPRSNGFEVILVVVDRFSKYEHFLSLKHPFMEKT 139
            ILH   + +         +   + GLP++ G +VILVVVDRFS+Y H L+LKHP+  K+
Sbjct: 655 EILHQVWSDI---------SMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKS 714

Query: 140 VAELFVKEIMQLHGYPKSIVYEQ------RLDILEQFLEPDGRKNGQDGYTGMSIDKMKK 199
           VA++FVKEI++LHG P SIVY++      +  I EQ  E D        +  ++  +MK 
Sbjct: 715 VADIFVKEIVKLHGSPSSIVYDKDKGGTSKSSIDEQLREQDITLAALREHLLLAQQQMKL 774

Query: 200 NVDLKHRDVEYAVGDMVFLKIRPRRHISFRKKKNEKLSHKFFGSYKIVERSVEI-WSMPL 250
             D K   VE+ +G++V LKI P + ++ R K+NEKLS ++FG YKI+E+  E+ + + L
Sbjct: 775 YADRKRCQVEFKIGELVLLKICPYQQVTLRSKRNEKLSSRYFGPYKILEKIGEVAYKLEL 829

[Close]

BLAST of CSPI04G10400 vs. NCBI nr
Match: gi|734365975|gb|KHN17911.1| (hypothetical protein glysoja_017962, partial [Glycine soja])

HSP 1 Score: 123.2 bits (308), Expect = 6.3e-25
Identity = 70/155 (45.16%), Postives = 98/155 (63.23%), Query Frame = 1


Query: 10  LTAPALVDILVFKEEVEGDEKLSKIMTELQTEEKDKESKFSIQQGMLRYKDMLVLSKTSA 69
           L+ P  +D     +EV  D  L K + ELQ    D ++ F++QQG+L Y+  LVLS  S 
Sbjct: 56  LSYPTWLDGEKLLQEVRQDTMLQKTVKELQMNP-DLKAGFTVQQGILFYQGRLVLSPNSP 115

Query: 70  LIPTILHTYHNSVLGGHSGLLHAYKRLTGLPRSNGFEVILVVVDRFSKYEHFLSLKHPFM 129
            IP +L  +H + + GHSG L  YKRL     + GFE +LVVVDR SKY HFL LKHP+ 
Sbjct: 116 SIPLLLKEFHETPMEGHSGFLRTYKRLAA---NLGFEAVLVVVDRLSKYSHFLLLKHPYT 175

Query: 130 EKTVAELFVKEIMQLHGYPKSIVYEQRLDILEQFL 165
            K+VAELFV+E+++LHG P SI+ ++    ++ +L
Sbjct: 176 AKSVAELFVREVVRLHGIPMSIISDRDPIFVKSYL 206

[Close]

BLAST of CSPI04G10400 vs. NCBI nr
Match: gi|734371609|gb|KHN19652.1| (Transposon Ty3-G Gag-Pol polyprotein, partial [Glycine soja])

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 64/156 (41.03%), Postives = 98/156 (62.82%), Query Frame = 1


Query: 8   CSLTAPALVDILVFKEEVEGDEKLSKIMTELQTEEKDKESKFSIQQGMLRYKDMLVLSKT 67
           C++T   + D   + EE++ D+KL KIM +L  +       ++++   L YK+ LVLSK+
Sbjct: 50  CAMTVLQIHDFEEWTEEIKQDDKLQKIMQDLIIDPASHMG-YTLRDQKLFYKEKLVLSKS 109

Query: 68  SALIPTILHTYHNSVLGGHSGLLHAYKRLT--------GLPRSNGFEVILVVVDRFSKYE 127
           S+ IP IL  +H+S++GGHSG+   YKR+         GLP+S   + ILVVVDR +KY 
Sbjct: 110 SSRIPIILKEFHSSLVGGHSGIFKTYKRIANISMDFIGGLPKSKEKDTILVVVDRLTKYA 169

Query: 128 HFLSLKHPFMEKTVAELFVKEIMQLHGYPKSIVYEQ 156
           HF+ L HPF    VA  F+++I++LHG+  SIV ++
Sbjct: 170 HFIPLGHPFTATEVATTFLQKIVRLHGFLPSIVSDR 204

[Close]

BLAST of CSPI04G10400 vs. NCBI nr
Match: gi|674247634|gb|KFK40399.1| (hypothetical protein AALP_AA3G368400 [Arabis alpina])

HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22
Identity = 56/145 (38.62%), Postives = 90/145 (62.07%), Query Frame = 1


Query: 96  LTGLPRSNGFEVILVVVDRFSKYEHFLSLKHPFMEKTVAELFVKEIMQLHGYPKSIVYEQ 155
           + GLP+S G++VI+VVVD  +K  HF  LKHPF+   VA LF++E+++LHG+PK++V ++
Sbjct: 382 IEGLPKSEGYDVIMVVVDMLTKSAHFSRLKHPFVASEVALLFIQEVVRLHGFPKTLVSDR 441

Query: 156 RLDILEQFLEPDGRKNGQDGYTGMSIDKMKKNVDLKHRDVEYAVGDMVFLKIRPRRHISF 215
              IL+                  +   MK+  D   R+VE+ VGDMV+LK++P R  S 
Sbjct: 442 DKHILK------------------AQQAMKRQADKHRREVEFQVGDMVYLKLKPYRQKSL 501

Query: 216 RKKKNEKLSHKFFGSYKIVERSVEI 241
            ++ NEKLS +++  Y+++ R  E+
Sbjct: 502 ARRSNEKLSARYYSPYEVLARVGEV 508

The following BLAST results are available for this feature:

BLAST of CSPI04G10400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G10400 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBA8_CUCME	1.6e-30	37.93	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0B2Q8F5_GLYSO	4.4e-25	45.16	Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_017962 PE=4 SV=1	[more]
A0A0B2QIQ3_GLYSO	2.0e-22	41.03	Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Glycine soja GN=glysoja_04254...	[more]
A0A087HE47_ARAAL	4.5e-22	38.62	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G368400 PE=4 SV=1	[more]
A0A087G0A8_ARAAL	5.6e-20	36.78	Uncharacterized protein OS=Arabis alpina GN=AALP_AAs43195U000200 PE=4 SV=1	[more]

BLAST of CSPI04G10400 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G10400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135885\|gb\|ADN33750.1\|	2.2e-30	37.93	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659113889\|ref\|XP_008456800.1\|	6.7e-27	35.25	PREDICTED: uncharacterized protein LOC103496640 [Cucumis melo]	[more]
gi\|734365975\|gb\|KHN17911.1\|	6.3e-25	45.16	hypothetical protein glysoja_017962, partial [Glycine soja]	[more]
gi\|734371609\|gb\|KHN19652.1\|	2.9e-22	41.03	Transposon Ty3-G Gag-Pol polyprotein, partial [Glycine soja]	[more]
gi\|674247634\|gb\|KFK40399.1\|	6.5e-22	38.62	hypothetical protein AALP_AA3G368400 [Arabis alpina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G10400.1	CSPI04G10400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 97..152 score: 3.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 97..153 score: 1.3
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 26..243 score: 1.4
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 26..243 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G10400	Melon (DHL92) v3.6.1	cpimedB315
CSPI04G10400	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G10400	Silver-seed gourd	carcpiB0222
CSPI04G10400	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G10400	Watermelon (97103) v2	cpiwmbB311
CSPI04G10400	Wax gourd	cpiwgoB397
CSPI04G10400	Cucumber (Gy14) v1	cgycpiB011
CSPI04G10400	Cucurbita maxima (Rimu)	cmacpiB681
CSPI04G10400	Cucurbita moschata (Rifu)	cmocpiB674
CSPI04G10400	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G10400	Melon (DHL92) v3.5.1	cpimeB332
CSPI04G10400	Watermelon (Charleston Gray)	cpiwcgB320
CSPI04G10400	Cucurbita pepo (Zucchini)	cpecpiB069
CSPI04G10400	Bottle gourd (USVL1VR-Ls)	cpilsiB259