CSPI04G09420 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G09420
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr4 : 7366651 .. 7367533 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCTAGTCAAAAGTAGCGTGTTGAACGAGGAGATGAGAAGAAAGTCTCAAAGTTCTTGTTCACAGTCAGATGTTTTGGTTAGTGAAAAGAGGGGGAGGAGTAAAAGTAAAGGTTTGAGAGGTATATAATAATATAAGCAAAAGCAAAAGTGACTGATTTGCAAATGTTGAGTGTTACTCTTGCCATAAAAAGAGGCATATAAAGAAGTATTGTCGAAAATTGAAAAGAGACCGTAAAAATCATAAGGGCAAGGAAAAGAAGAATGAGGATGATAGTGATACTGATACAATCACTGTAGCCACTGAAGATTTTTTCGTCTTGTCTGATGGTGATGTTGTAAATCTTGCCACACAACAGAGCAGTTGGGTGATTGATAGTGGTGCCTCAATTCATGCTACTTCAAAGAGGGAATTTTTTGCATCCTACACTCCTGGTGATTTTGGCAGTGTTATGATGGATAATGACGGATCAACAAATACAGTTGGCATCGGAGATGTACACTTGAAAAACAGAAATGGTTCTAGGCTGATTTTGAAAAATGTGAAACATATTCCTGATATTCGCATGAACTTGATTTCTATATGTAAGCTTGATGACGAAGGTTTCTACAATACCTTCAACAATGGCATATGGAAGCTTACTAAAGGTTCAATGGTTATAGCAAAGGGACAAAAATTTTCTTCACTGTACTATATGAATGCAAAAATCATGGATTCTGATATAAATACAGGGAATGATGAAGCAAATGTTGAGCTTTGGCATAAGAGACTTAGCCATATAAGTGAAAAGGGTTTAAAGATTTTAACCAAGAAAAATCATCTTCTTGATTTAAAGAGTACACCTCTAAAACAGTGTCCTCATTGTTTGGCAGGAAAGTAG

mRNA sequence

ATGGACCTAGTCAAAAGTAGCGTGTTGAACGAGGAGATGAGAAGAAAGTCTCAAAGTTCTTGTTCACAGTCAGATGTTTTGAGGCATATAAAGAAGTATTGTCGAAAATTGAAAAGAGACCGTAAAAATCATAAGGGCAAGGAAAAGAAGAATGAGGATGATAGTGATACTGATACAATCACTGTAGCCACTGAAGATTTTTTCGTCTTGTCTGATGGTGATGTTGTAAATCTTGCCACACAACAGAGCAGTTGGGTGATTGATAGTGGTGCCTCAATTCATGCTACTTCAAAGAGGGAATTTTTTGCATCCTACACTCCTGGTGATTTTGGCAGTGTTATGATGGATAATGACGGATCAACAAATACAGTTGGCATCGGAGATGTACACTTGAAAAACAGAAATGGTTCTAGGCTGATTTTGAAAAATGTGAAACATATTCCTGATATTCGCATGAACTTGATTTCTATATGTAAGCTTGATGACGAAGGTTTCTACAATACCTTCAACAATGGCATATGGAAGCTTACTAAAGGTTCAATGGTTATAGCAAAGGGACAAAAATTTTCTTCACTGTACTATATGAATGCAAAAATCATGGATTCTGATATAAATACAGGGAATGATGAAGCAAATGTTGAGCTTTGGCATAAGAGACTTAGCCATATAAGTGAAAAGGGTTTAAAGATTTTAACCAAGAAAAATCATCTTCTTGATTTAAAGAGTACACCTCTAAAACAGTGTCCTCATTGTTTGGCAGGAAAGTAG

Coding sequence (CDS)

ATGGACCTAGTCAAAAGTAGCGTGTTGAACGAGGAGATGAGAAGAAAGTCTCAAAGTTCTTGTTCACAGTCAGATGTTTTGAGGCATATAAAGAAGTATTGTCGAAAATTGAAAAGAGACCGTAAAAATCATAAGGGCAAGGAAAAGAAGAATGAGGATGATAGTGATACTGATACAATCACTGTAGCCACTGAAGATTTTTTCGTCTTGTCTGATGGTGATGTTGTAAATCTTGCCACACAACAGAGCAGTTGGGTGATTGATAGTGGTGCCTCAATTCATGCTACTTCAAAGAGGGAATTTTTTGCATCCTACACTCCTGGTGATTTTGGCAGTGTTATGATGGATAATGACGGATCAACAAATACAGTTGGCATCGGAGATGTACACTTGAAAAACAGAAATGGTTCTAGGCTGATTTTGAAAAATGTGAAACATATTCCTGATATTCGCATGAACTTGATTTCTATATGTAAGCTTGATGACGAAGGTTTCTACAATACCTTCAACAATGGCATATGGAAGCTTACTAAAGGTTCAATGGTTATAGCAAAGGGACAAAAATTTTCTTCACTGTACTATATGAATGCAAAAATCATGGATTCTGATATAAATACAGGGAATGATGAAGCAAATGTTGAGCTTTGGCATAAGAGACTTAGCCATATAAGTGAAAAGGGTTTAAAGATTTTAACCAAGAAAAATCATCTTCTTGATTTAAAGAGTACACCTCTAAAACAGTGTCCTCATTGTTTGGCAGGAAAGTAG

Homology

[Close]

BLAST of CSPI04G09420 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.2e-45
Identity = 99/243 (40.74%), Postives = 147/243 (60.49%), Query Frame = 1


Query: 14  RRKSQ-SSCSQSDVLRHIKKYCRKLKRDRKNHKGKEKKNEDDSDTDTITVATEDFFVLSD 73
           R KS+  +C   +   H K+ C   ++ +    G+  KN+D++            F+  +
Sbjct: 224 RSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQ--KNDDNTAAMVQNNDNVVLFINEE 283

Query: 74  GDVVNLATQQSSWVIDSGASIHATSKREFFASYTPGDFGSVMMDNDGSTNTVGIGDVHLK 133
            + ++L+  +S WV+D+ AS HAT  R+ F  Y  GDFG+V M N   +   GIGD+ +K
Sbjct: 284 EECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIK 343

Query: 134 NRNGSRLILKNVKHIPDIRMNLISICKLDDEGFYNTFNNGIWKLTKGSMVIAKGQKFSSL 193
              G  L+LK+V+H+PD+RMNLIS   LD +G+ + F N  W+LTKGS+VIAKG    +L
Sbjct: 344 TNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTL 403

Query: 194 YYMNAKIMDSDINTGNDEANVELWHKRLSHISEKGLKILTKKNHLLDLKSTPLKQCPHCL 253
           Y  NA+I   ++N   DE +V+LWHKR+ H+SEKGL+IL KK+ +   K T +K C +CL
Sbjct: 404 YRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCL 463

Query: 254 AGK 256
            GK
Sbjct: 464 FGK 464

[Close]

BLAST of CSPI04G09420 vs. Swiss-Prot
Match: M300_ARATH (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-10
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 170 NNGIWKLTKGSMVIAKGQKFSSLYYMNAKIMDSDIN---TGNDEANVELWHKRLSHISEK 229
           + G+ K+ KG   I KG +  SLY +   +   + N   T  DE    LWH RL+H+S++
Sbjct: 25  SEGVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETR--LWHSRLAHMSQR 84

Query: 230 GLKILTKKNHLLDLKSTPLKQCPHCLAGK 256
           G+++L KK  L   K + LK C  C+ GK
Sbjct: 85  GMELLVKKGFLDSSKVSSLKFCEDCIYGK 111

[Close]

BLAST of CSPI04G09420 vs. TrEMBL
Match: A5C9D7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007304 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.4e-79
Identity = 164/292 (56.16%), Postives = 192/292 (65.75%), Query Frame = 1


Query: 1   MDLVKSSVLNEEMRRKSQSSCSQSDVL--------------------------------- 60
           MDLVKS VLNEEMRRKSQ S SQS+VL                                 
Sbjct: 150 MDLVKSCVLNEEMRRKSQGSSSQSNVLVIXKXGRSKSRGPKNRDRSKSKTNKFANVECHY 209

Query: 61  ----RHIKKYCRKLKRDRKNHKGKEKKNEDDSDTDTITVATEDFFVLSDGDVVNLATQQS 120
                HIKKYCR+LKRD K  K KEKKN++  + D +     DF ++ D DVVN A Q+S
Sbjct: 210 CHLKGHIKKYCRQLKRDMKQGKVKEKKNDNGGEDDQVATTISDFLIVYDSDVVNFACQES 269

Query: 121 SWVIDSGASIHATSKREFFASYTPGDFGSVMMDNDGSTNTVGIGDVHLKNRNGSRLILKN 180
            WVID GASIHAT +++FF SYT GDFGSV M NDGS   +G+GDV L+  NG+ L LKN
Sbjct: 270 XWVIDXGASIHATPQKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLTLKN 329

Query: 181 VKHIPDIRMNLISICKLDDEGFYNTFNNGIWKLTKGSMVIAKGQKFSSLYYMNAKIMDSD 240
           VKHIPDIRMNLIS  KLDDEGF NTF +  WKLT+GSMVIAKG K SSLY M A+++DS 
Sbjct: 330 VKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLTRGSMVIAKGNKSSSLYLMQARVIDSS 389

Query: 241 INTGNDEANVELWHKRLSHISEKGLKILTKKNHLLDLKSTPLKQCPHCLAGK 256
           IN  +D++  ELWH +L H+SEKGL IL KKN L  +K   LK+C HCLAGK
Sbjct: 390 INAVDDDSTFELWHNKLGHMSEKGLMILAKKNLLXGMKKGSLKRCAHCLAGK 441

[Close]

BLAST of CSPI04G09420 vs. TrEMBL
Match: A5B4R8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018405 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.1e-75
Identity = 144/235 (61.28%), Postives = 172/235 (73.19%), Query Frame = 1


Query: 21  CSQSDVLRHIKKYCRKLKRDRKNHKGKEKKNEDDSDTDTITVATEDFFVLSDGDVVNLAT 80
           C    +  HIKKYCR+LKRD K  K KEKKN++  + D +   T DF ++ D DVVN A 
Sbjct: 94  CHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNGGEDDQVATTTSDFLIVYDSDVVNFAC 153

Query: 81  QQSSWVIDSGASIHATSKREFFASYTPGDFGSVMMDNDGSTNTVGIGDVHLKNRNGSRLI 140
           Q++SWVIDSGASIHAT +++FF SYT GDFGSV M NDGS   +G+GDV L+  NG+ L 
Sbjct: 154 QETSWVIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLT 213

Query: 141 LKNVKHIPDIRMNLISICKLDDEGFYNTFNNGIWKLTKGSMVIAKGQKFSSLYYMNAKIM 200
           LKNVKHIPDIRMNLIS  KLDDEGF NTF +  WKLT+GSM IAKG K SSLY M A+++
Sbjct: 214 LKNVKHIPDIRMNLISTGKLDDEGFXNTFRDSQWKLTRGSMXIAKGNKSSSLYLMQARVI 273

Query: 201 DSDINTGNDEANVELWHKRLSHISEKGLKILTKKNHLLDLKSTPLKQCPHCLAGK 256
           DS IN  +D++  ELWH RL H+SEKGL IL KKN L  +K   LK+C HCLAGK
Sbjct: 274 DSSINAVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSXMKKGSLKRCAHCLAGK 328

[Close]

BLAST of CSPI04G09420 vs. TrEMBL
Match: A5BJP3_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_001876 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.3e-72
Identity = 156/292 (53.42%), Postives = 184/292 (63.01%), Query Frame = 1


Query: 1   MDLVKSSVLNEEMRRKSQSSCSQSDVL--------------------------------- 60
           MDLVKS VLNEEMRRKSQ S SQS+VL                                 
Sbjct: 40  MDLVKSCVLNEEMRRKSQGSSSQSNVLVTEKRGRSKSRGPKNRDRSKRKTNKFANVECHY 99

Query: 61  ----RHIKKYCRKLKRDRKNHKGKEKKNEDDSDTDTITVATEDFFVLSDGDVVNLATQQS 120
                HIKKY R+LKRD K  K KEKKN++  + D +   T DF ++ D DVVN A Q++
Sbjct: 100 CHLKGHIKKYYRQLKRDMKQEKVKEKKNDNGGEDDQVVTTTSDFLIVYDSDVVNFACQET 159

Query: 121 SWVIDSGASIHATSKREFFASYTPGDFGSVMMDNDGSTNTVGIGDVHLKNRNGSRLILKN 180
           SWVIDSGASIHAT +++FF SYT GDFGSV M NDGS   +G+GDV L+  NG+ L LKN
Sbjct: 160 SWVIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVCLETSNGTMLTLKN 219

Query: 181 VKHIPDIRMNLISICKLDDEGFYNTFNNGIWKLTKGSMVIAKGQKFSSLYYMNAKIMDSD 240
           VKHIPDIRMNLISI KLDDEGF NTF +  WKLT+GSM               A+++DS 
Sbjct: 220 VKHIPDIRMNLISIGKLDDEGFCNTFRDSQWKLTRGSM---------------ARVIDSS 279

Query: 241 INTGNDEANVELWHKRLSHISEKGLKILTKKNHLLDLKSTPLKQCPHCLAGK 256
           IN  +D++  ELWH RL H+SEKGL IL KKN L  +K   LK+C HCLAGK
Sbjct: 280 INVVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSGMKKGSLKRCAHCLAGK 316

[Close]

BLAST of CSPI04G09420 vs. TrEMBL
Match: A5AJF5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010919 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 9.1e-71
Identity = 155/292 (53.08%), Postives = 185/292 (63.36%), Query Frame = 1


Query: 1   MDLVKSSVLNEEMRRKSQSSCSQSDVL--------------------------------- 60
           MDLVKS VLNEEM RKSQ S SQ DVL                                 
Sbjct: 172 MDLVKSCVLNEEMGRKSQGSSSQLDVLVTKKKERSKSRGPNNRDRRKSKTNKFANVECHY 231

Query: 61  ----RHIKKYCRKLKRDRKNHKGKEKKNEDDSDTDTITVATEDFFVLSDGDVVNLATQQS 120
                HI KYCR+LKRD K  K K+KKN++  + D +   T DF ++ D DVVN A Q++
Sbjct: 232 FHLKGHIVKYCRQLKRDMKQGKVKDKKNDNGGEDDRVATTTSDFLIVYDSDVVNFACQET 291

Query: 121 SWVIDSGASIHATSKREFFASYTPGDFGSVMMDNDGSTNTVGIGDVHLKNRNGSRLILKN 180
           SWVIDSGA IHAT +++FF SYT GDFGSV MDN+GS   +G+  V L+  NG+ LILKN
Sbjct: 292 SWVIDSGALIHATPQKDFFTSYTFGDFGSVXMDNEGSAKAIGMRYVRLETSNGTMLILKN 351

Query: 181 VKHIPDIRMNLISICKLDDEGFYNTFNNGIWKLTKGSMVIAKGQKFSSLYYMNAKIMDSD 240
           VKHIPDIR   IS  KLDDEGFYNTF++  WKLT GSMV  KG+K SSL  M A+++DS 
Sbjct: 352 VKHIPDIR---ISTGKLDDEGFYNTFHDSQWKLTIGSMVATKGKKCSSLCLMQARVIDSS 411

Query: 241 INTGNDEANVELWHKRLSHISEKGLKILTKKNHLLDLKSTPLKQCPHCLAGK 256
           IN  +D++ VELWH +L H+SEKGL IL KKN L  +K   LK C HCL  K
Sbjct: 412 INAVDDDSIVELWHNKLGHMSEKGLMILAKKNLLSGMKKGSLKMCAHCLVRK 460

[Close]

BLAST of CSPI04G09420 vs. TrEMBL
Match: A5AIP8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008453 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.0e-70
Identity = 151/284 (53.17%), Postives = 185/284 (65.14%), Query Frame = 1


Query: 1   MDLVKSSVLNEEMRRKSQSSCSQSDVL--------------------------------- 60
           M+LVKS VLNEEMRRKS  S SQSDVL                                 
Sbjct: 68  MNLVKSCVLNEEMRRKSHGSSSQSDVLVTEKMGRSKSRGPKNRDRSKSKTNKFANVECHY 127

Query: 61  ----RHIKKYCRKLKRDRKNHKGKEKKNEDDSDTDTITVATEDFFVLSDGDVVNLATQQS 120
                HI+KYC +LKR  K  K K+KKN++D + D +   T +F ++ D DVVN A Q++
Sbjct: 128 CHLKGHIRKYCSQLKRYMKQGKVKDKKNDNDGEDDRVATTTSNFLIVYDSDVVNFACQET 187

Query: 121 SWVIDSGASIHATSKREFFASYTPGDFGSVMMDNDGSTNTVGIGDVHLKNRNGSRLILKN 180
           SWVIDS ASIHAT +++FF SYT  DFGSVMM NDGS   +G+ DV L+  NG+ LILKN
Sbjct: 188 SWVIDSSASIHATPQKDFFTSYTSSDFGSVMMGNDGSAKAIGMRDVCLETSNGTMLILKN 247

Query: 181 VKHIPDIRMNLISICKLDDEGFYNTFNNGIWKLTKGSMVIAKGQKFSSLYYMNAKIMDSD 240
           VKHIP+I MNLIS  KLDDEGF N F +  WKLT+GSMV+AKG+K SSLY M A+++DS 
Sbjct: 248 VKHIPNICMNLISTSKLDDEGFCNIFRDSQWKLTRGSMVVAKGKKRSSLYLMQARVIDSS 307

Query: 241 INTGNDEANVELWHKRLSHISEKGLKILTKKNHLLDLKSTPLKQ 248
           IN  +D+  +ELWH RLSH+SEKGL IL KKN L  +K   LK+
Sbjct: 308 INVVDDDITIELWHNRLSHMSEKGLMILAKKNLLSGMKKGSLKR 351

[Close]

BLAST of CSPI04G09420 vs. TAIR10
Match: ATMG00300.1 (ATMG00300.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 65.5 bits (158), Expect = 5.6e-11
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 170 NNGIWKLTKGSMVIAKGQKFSSLYYMNAKIMDSDIN---TGNDEANVELWHKRLSHISEK 229
           + G+ K+ KG   I KG +  SLY +   +   + N   T  DE    LWH RL+H+S++
Sbjct: 25  SEGVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETR--LWHSRLAHMSQR 84

Query: 230 GLKILTKKNHLLDLKSTPLKQCPHCLAGK 256
           G+++L KK  L   K + LK C  C+ GK
Sbjct: 85  GMELLVKKGFLDSSKVSSLKFCEDCIYGK 111

[Close]

BLAST of CSPI04G09420 vs. NCBI nr
Match: gi|147784778|emb|CAN75440.1| (hypothetical protein VITISV_007304 [Vitis vinifera])

HSP 1 Score: 304.3 bits (778), Expect = 2.0e-79
Identity = 164/292 (56.16%), Postives = 192/292 (65.75%), Query Frame = 1


Query: 1   MDLVKSSVLNEEMRRKSQSSCSQSDVL--------------------------------- 60
           MDLVKS VLNEEMRRKSQ S SQS+VL                                 
Sbjct: 150 MDLVKSCVLNEEMRRKSQGSSSQSNVLVIXKXGRSKSRGPKNRDRSKSKTNKFANVECHY 209

Query: 61  ----RHIKKYCRKLKRDRKNHKGKEKKNEDDSDTDTITVATEDFFVLSDGDVVNLATQQS 120
                HIKKYCR+LKRD K  K KEKKN++  + D +     DF ++ D DVVN A Q+S
Sbjct: 210 CHLKGHIKKYCRQLKRDMKQGKVKEKKNDNGGEDDQVATTISDFLIVYDSDVVNFACQES 269

Query: 121 SWVIDSGASIHATSKREFFASYTPGDFGSVMMDNDGSTNTVGIGDVHLKNRNGSRLILKN 180
            WVID GASIHAT +++FF SYT GDFGSV M NDGS   +G+GDV L+  NG+ L LKN
Sbjct: 270 XWVIDXGASIHATPQKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLTLKN 329

Query: 181 VKHIPDIRMNLISICKLDDEGFYNTFNNGIWKLTKGSMVIAKGQKFSSLYYMNAKIMDSD 240
           VKHIPDIRMNLIS  KLDDEGF NTF +  WKLT+GSMVIAKG K SSLY M A+++DS 
Sbjct: 330 VKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLTRGSMVIAKGNKSSSLYLMQARVIDSS 389

Query: 241 INTGNDEANVELWHKRLSHISEKGLKILTKKNHLLDLKSTPLKQCPHCLAGK 256
           IN  +D++  ELWH +L H+SEKGL IL KKN L  +K   LK+C HCLAGK
Sbjct: 390 INAVDDDSTFELWHNKLGHMSEKGLMILAKKNLLXGMKKGSLKRCAHCLAGK 441

[Close]

BLAST of CSPI04G09420 vs. NCBI nr
Match: gi|147766788|emb|CAN74160.1| (hypothetical protein VITISV_018405 [Vitis vinifera])

HSP 1 Score: 290.4 bits (742), Expect = 3.0e-75
Identity = 144/235 (61.28%), Postives = 172/235 (73.19%), Query Frame = 1


Query: 21  CSQSDVLRHIKKYCRKLKRDRKNHKGKEKKNEDDSDTDTITVATEDFFVLSDGDVVNLAT 80
           C    +  HIKKYCR+LKRD K  K KEKKN++  + D +   T DF ++ D DVVN A 
Sbjct: 94  CHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNGGEDDQVATTTSDFLIVYDSDVVNFAC 153

Query: 81  QQSSWVIDSGASIHATSKREFFASYTPGDFGSVMMDNDGSTNTVGIGDVHLKNRNGSRLI 140
           Q++SWVIDSGASIHAT +++FF SYT GDFGSV M NDGS   +G+GDV L+  NG+ L 
Sbjct: 154 QETSWVIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLT 213

Query: 141 LKNVKHIPDIRMNLISICKLDDEGFYNTFNNGIWKLTKGSMVIAKGQKFSSLYYMNAKIM 200
           LKNVKHIPDIRMNLIS  KLDDEGF NTF +  WKLT+GSM IAKG K SSLY M A+++
Sbjct: 214 LKNVKHIPDIRMNLISTGKLDDEGFXNTFRDSQWKLTRGSMXIAKGNKSSSLYLMQARVI 273

Query: 201 DSDINTGNDEANVELWHKRLSHISEKGLKILTKKNHLLDLKSTPLKQCPHCLAGK 256
           DS IN  +D++  ELWH RL H+SEKGL IL KKN L  +K   LK+C HCLAGK
Sbjct: 274 DSSINAVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSXMKKGSLKRCAHCLAGK 328

[Close]

BLAST of CSPI04G09420 vs. NCBI nr
Match: gi|147780357|emb|CAN59934.1| (hypothetical protein VITISV_001876 [Vitis vinifera])

HSP 1 Score: 278.5 bits (711), Expect = 1.2e-71
Identity = 156/292 (53.42%), Postives = 184/292 (63.01%), Query Frame = 1


Query: 1   MDLVKSSVLNEEMRRKSQSSCSQSDVL--------------------------------- 60
           MDLVKS VLNEEMRRKSQ S SQS+VL                                 
Sbjct: 40  MDLVKSCVLNEEMRRKSQGSSSQSNVLVTEKRGRSKSRGPKNRDRSKRKTNKFANVECHY 99

Query: 61  ----RHIKKYCRKLKRDRKNHKGKEKKNEDDSDTDTITVATEDFFVLSDGDVVNLATQQS 120
                HIKKY R+LKRD K  K KEKKN++  + D +   T DF ++ D DVVN A Q++
Sbjct: 100 CHLKGHIKKYYRQLKRDMKQEKVKEKKNDNGGEDDQVVTTTSDFLIVYDSDVVNFACQET 159

Query: 121 SWVIDSGASIHATSKREFFASYTPGDFGSVMMDNDGSTNTVGIGDVHLKNRNGSRLILKN 180
           SWVIDSGASIHAT +++FF SYT GDFGSV M NDGS   +G+GDV L+  NG+ L LKN
Sbjct: 160 SWVIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVCLETSNGTMLTLKN 219

Query: 181 VKHIPDIRMNLISICKLDDEGFYNTFNNGIWKLTKGSMVIAKGQKFSSLYYMNAKIMDSD 240
           VKHIPDIRMNLISI KLDDEGF NTF +  WKLT+GSM               A+++DS 
Sbjct: 220 VKHIPDIRMNLISIGKLDDEGFCNTFRDSQWKLTRGSM---------------ARVIDSS 279

Query: 241 INTGNDEANVELWHKRLSHISEKGLKILTKKNHLLDLKSTPLKQCPHCLAGK 256
           IN  +D++  ELWH RL H+SEKGL IL KKN L  +K   LK+C HCLAGK
Sbjct: 280 INVVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSGMKKGSLKRCAHCLAGK 316

[Close]

BLAST of CSPI04G09420 vs. NCBI nr
Match: gi|147777716|emb|CAN66809.1| (hypothetical protein VITISV_010919 [Vitis vinifera])

HSP 1 Score: 275.0 bits (702), Expect = 1.3e-70
Identity = 155/292 (53.08%), Postives = 185/292 (63.36%), Query Frame = 1


Query: 1   MDLVKSSVLNEEMRRKSQSSCSQSDVL--------------------------------- 60
           MDLVKS VLNEEM RKSQ S SQ DVL                                 
Sbjct: 172 MDLVKSCVLNEEMGRKSQGSSSQLDVLVTKKKERSKSRGPNNRDRRKSKTNKFANVECHY 231

Query: 61  ----RHIKKYCRKLKRDRKNHKGKEKKNEDDSDTDTITVATEDFFVLSDGDVVNLATQQS 120
                HI KYCR+LKRD K  K K+KKN++  + D +   T DF ++ D DVVN A Q++
Sbjct: 232 FHLKGHIVKYCRQLKRDMKQGKVKDKKNDNGGEDDRVATTTSDFLIVYDSDVVNFACQET 291

Query: 121 SWVIDSGASIHATSKREFFASYTPGDFGSVMMDNDGSTNTVGIGDVHLKNRNGSRLILKN 180
           SWVIDSGA IHAT +++FF SYT GDFGSV MDN+GS   +G+  V L+  NG+ LILKN
Sbjct: 292 SWVIDSGALIHATPQKDFFTSYTFGDFGSVXMDNEGSAKAIGMRYVRLETSNGTMLILKN 351

Query: 181 VKHIPDIRMNLISICKLDDEGFYNTFNNGIWKLTKGSMVIAKGQKFSSLYYMNAKIMDSD 240
           VKHIPDIR   IS  KLDDEGFYNTF++  WKLT GSMV  KG+K SSL  M A+++DS 
Sbjct: 352 VKHIPDIR---ISTGKLDDEGFYNTFHDSQWKLTIGSMVATKGKKCSSLCLMQARVIDSS 411

Query: 241 INTGNDEANVELWHKRLSHISEKGLKILTKKNHLLDLKSTPLKQCPHCLAGK 256
           IN  +D++ VELWH +L H+SEKGL IL KKN L  +K   LK C HCL  K
Sbjct: 412 INAVDDDSIVELWHNKLGHMSEKGLMILAKKNLLSGMKKGSLKMCAHCLVRK 460

[Close]

BLAST of CSPI04G09420 vs. NCBI nr
Match: gi|147774837|emb|CAN64589.1| (hypothetical protein VITISV_008453 [Vitis vinifera])

HSP 1 Score: 273.9 bits (699), Expect = 2.9e-70
Identity = 151/284 (53.17%), Postives = 185/284 (65.14%), Query Frame = 1


Query: 1   MDLVKSSVLNEEMRRKSQSSCSQSDVL--------------------------------- 60
           M+LVKS VLNEEMRRKS  S SQSDVL                                 
Sbjct: 68  MNLVKSCVLNEEMRRKSHGSSSQSDVLVTEKMGRSKSRGPKNRDRSKSKTNKFANVECHY 127

Query: 61  ----RHIKKYCRKLKRDRKNHKGKEKKNEDDSDTDTITVATEDFFVLSDGDVVNLATQQS 120
                HI+KYC +LKR  K  K K+KKN++D + D +   T +F ++ D DVVN A Q++
Sbjct: 128 CHLKGHIRKYCSQLKRYMKQGKVKDKKNDNDGEDDRVATTTSNFLIVYDSDVVNFACQET 187

Query: 121 SWVIDSGASIHATSKREFFASYTPGDFGSVMMDNDGSTNTVGIGDVHLKNRNGSRLILKN 180
           SWVIDS ASIHAT +++FF SYT  DFGSVMM NDGS   +G+ DV L+  NG+ LILKN
Sbjct: 188 SWVIDSSASIHATPQKDFFTSYTSSDFGSVMMGNDGSAKAIGMRDVCLETSNGTMLILKN 247

Query: 181 VKHIPDIRMNLISICKLDDEGFYNTFNNGIWKLTKGSMVIAKGQKFSSLYYMNAKIMDSD 240
           VKHIP+I MNLIS  KLDDEGF N F +  WKLT+GSMV+AKG+K SSLY M A+++DS 
Sbjct: 248 VKHIPNICMNLISTSKLDDEGFCNIFRDSQWKLTRGSMVVAKGKKRSSLYLMQARVIDSS 307

Query: 241 INTGNDEANVELWHKRLSHISEKGLKILTKKNHLLDLKSTPLKQ 248
           IN  +D+  +ELWH RLSH+SEKGL IL KKN L  +K   LK+
Sbjct: 308 INVVDDDITIELWHNRLSHMSEKGLMILAKKNLLSGMKKGSLKR 351

The following BLAST results are available for this feature:

BLAST of CSPI04G09420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	7.2e-45	40.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
M300_ARATH	9.9e-10	37.08	Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CSPI04G09420 vs. TrEMBL


Match Name	E-value	Identity	Description
A5C9D7_VITVI	1.4e-79	56.16	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007304 PE=4 SV=1	[more]
A5B4R8_VITVI	2.1e-75	61.28	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018405 PE=4 SV=1	[more]
A5BJP3_VITVI	8.3e-72	53.42	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_001876 P...	[more]
A5AJF5_VITVI	9.1e-71	53.08	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010919 PE=4 SV=1	[more]
A5AIP8_VITVI	2.0e-70	53.17	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008453 PE=4 SV=1	[more]

BLAST of CSPI04G09420 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00300.1	5.6e-11	37.08	ATMG00300.1 Gag-Pol-related retrotransposon family protein	[more]

BLAST of CSPI04G09420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147784778\|emb\|CAN75440.1\|	2.0e-79	56.16	hypothetical protein VITISV_007304 [Vitis vinifera]	[more]
gi\|147766788\|emb\|CAN74160.1\|	3.0e-75	61.28	hypothetical protein VITISV_018405 [Vitis vinifera]	[more]
gi\|147780357\|emb\|CAN59934.1\|	1.2e-71	53.42	hypothetical protein VITISV_001876 [Vitis vinifera]	[more]
gi\|147777716\|emb\|CAN66809.1\|	1.3e-70	53.08	hypothetical protein VITISV_010919 [Vitis vinifera]	[more]
gi\|147774837\|emb\|CAN64589.1\|	2.9e-70	53.17	hypothetical protein VITISV_008453 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G09420.1	CSPI04G09420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 192..255 score: 5.7
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 14..255 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G09420	Melon (DHL92) v3.6.1	cpimedB306
CSPI04G09420	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G09420	Silver-seed gourd	carcpiB0411
CSPI04G09420	Silver-seed gourd	carcpiB0907
CSPI04G09420	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G09420	Watermelon (97103) v2	cpiwmbB279
CSPI04G09420	Wax gourd	cpiwgoB360
CSPI04G09420	Cucumber (Gy14) v1	cgycpiB585
CSPI04G09420	Cucurbita maxima (Rimu)	cmacpiB339
CSPI04G09420	Cucurbita maxima (Rimu)	cmacpiB725
CSPI04G09420	Cucurbita moschata (Rifu)	cmocpiB333
CSPI04G09420	Cucurbita moschata (Rifu)	cmocpiB720
CSPI04G09420	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G09420	Melon (DHL92) v3.5.1	cpimeB314
CSPI04G09420	Watermelon (Charleston Gray)	cpiwcgB281
CSPI04G09420	Watermelon (97103) v1	cpiwmB294
CSPI04G09420	Cucurbita pepo (Zucchini)	cpecpiB224
CSPI04G09420	Cucurbita pepo (Zucchini)	cpecpiB410
CSPI04G09420	Bottle gourd (USVL1VR-Ls)	cpilsiB275