CSPI04G08850 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G08850
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 6590530 .. 6591717 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGATTAATAAAAAATATATAGTAAATAATGTGATGGAAGTTCTTTTTTTAATGTGCAAATTTCGAGTGTAATTATGATTTATAAGAGCAAAATGATTAAAAAAGGAATTTGGGGAATCTCGACCATTATTGGTGAAGAAAGACAAGGCAAGGCTGTCTTTCAAGTCCCCAACTTCACCACTCTCTCTATTTTCTTTTTCTTTCCTTTCTATTATACACATACTCACATATATGATATATATATATCTTTCCTATTGCTATTCATTTCAACTTCACAATAAACACACTTTCTCTAAATTTTTCTCTCTTCACAAACCCTTTTCTCTTTTAACATCTCTCTCTATCTTTTGTTTGGTAGAGAGAATGAAAATGGGTTTCCAATTTGTAATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCTTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCGGCAGCATCCCCACCTCCCGCCACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCCACCCCACCACCTGCTTCGACCCCACCATCATCGCCTCCGAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACAGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCATCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAACAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGGAGGAAATGGGGCGGCAAGCGTTAGCCGGGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTATTTGCTTAGAGCGATTGAGTTCAAACGACACAAAGAGTGGAGTGCGATCCATTTTGGTGTTGGTTTTAATTATTGAAATGGAAAAATTTGATATTTGATATTTATGTTAATTGTAGTGTTGTTAATTTTTCCTTGATTATAACTTCTTCCCAATATTTGTGTATGGTATTCTGTTTGGAGTTCTGATTATTAATGTTTTTCTTCGGTGATTCATTATTTTTATGTGTGGGATACGTGGTTATTGTAGATGGATATCATTGTGTACATCCAATCATGAATAAACATAGATTTCCATTCTTTTC

mRNA sequence

ATGATATATATATATCTTTCCTATTGCTATTCATTTCAACTTCACAATAAACACACTTTCTCTAAATTTTTCTCTCTTCACAAACCCTTTTCTCTTTTAACATCTCTCTCTATCTTTTGTTTGGTAGAGAGAATGAAAATGGGTTTCCAATTTGTAATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCTTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCGGCAGCATCCCCACCTCCCGCCACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCCACCCCACCACCTGCTTCGACCCCACCATCATCGCCTCCGAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACAGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCATCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAACAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGGAGGAAATGGGGCGGCAAGCGTTAGCCGGGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTATTTGCTTAG

Coding sequence (CDS)

ATGATATATATATATCTTTCCTATTGCTATTCATTTCAACTTCACAATAAACACACTTTCTCTAAATTTTTCTCTCTTCACAAACCCTTTTCTCTTTTAACATCTCTCTCTATCTTTTGTTTGGTAGAGAGAATGAAAATGGGTTTCCAATTTGTAATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCTTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCGGCAGCATCCCCACCTCCCGCCACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCCACCCCACCACCTGCTTCGACCCCACCATCATCGCCTCCGAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACAGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCATCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAACAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGGAGGAAATGGGGCGGCAAGCGTTAGCCGGGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTATTTGCTTAG

Homology

[Close]

BLAST of CSPI04G08850 vs. TrEMBL
Match: A0A0A0L0L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.2e-60
Identity = 165/176 (93.75%), Postives = 165/176 (93.75%), Query Frame = 1


Query: 45  MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 104
           MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAAS          PPP
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAAS----------PPP 60

Query: 105 ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 164
           ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61  ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120

Query: 165 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 221
           PTSSPPSPPPEGNVPTNSPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAMVFA
Sbjct: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166

[Close]

BLAST of CSPI04G08850 vs. NCBI nr
Match: gi|700198508|gb|KGN53666.1| (hypothetical protein Csa_4G098710 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 3.1e-60
Identity = 165/176 (93.75%), Postives = 165/176 (93.75%), Query Frame = 1


Query: 45  MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 104
           MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAAS          PPP
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAAS----------PPP 60

Query: 105 ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 164
           ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61  ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120

Query: 165 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 221
           PTSSPPSPPPEGNVPTNSPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAMVFA
Sbjct: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166

[Close]

BLAST of CSPI04G08850 vs. NCBI nr
Match: gi|778697564|ref|XP_011654350.1| (PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 4.5e-59
Identity = 163/174 (93.68%), Postives = 163/174 (93.68%), Query Frame = 1


Query: 47  MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 106
           MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAAS          PPPAT
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAAS----------PPPAT 60

Query: 107 PPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 166
           PPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT
Sbjct: 61  PPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 120

Query: 167 SSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 221
           SSPPSPPPEGNVPTNSPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAMVFA
Sbjct: 121 SSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 164

[Close]

BLAST of CSPI04G08850 vs. NCBI nr
Match: gi|659111292|ref|XP_008455676.1| (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 2.2e-58
Identity = 161/174 (92.53%), Postives = 163/174 (93.68%), Query Frame = 1


Query: 47  MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 106
           MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAAS          PPPAT
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAAS----------PPPAT 60

Query: 107 PPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 166
           PPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT
Sbjct: 61  PPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 120

Query: 167 SSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 221
           SSPPSPPPEGNVPT+SPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 SSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164

The following BLAST results are available for this feature:

BLAST of CSPI04G08850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G08850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0L1_CUCSA	2.2e-60	93.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1	[more]

BLAST of CSPI04G08850 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G08850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198508\|gb\|KGN53666.1\|	3.1e-60	93.75	hypothetical protein Csa_4G098710 [Cucumis sativus]	[more]
gi\|778697564\|ref\|XP_011654350.1\|	4.5e-59	93.68	PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus]	[more]
gi\|659111292\|ref\|XP_008455676.1\|	2.2e-58	92.53	PREDICTED: vegetative cell wall protein gp1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G08850.1	CSPI04G08850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 112..137 score: 2.0E-11coord: 91..108 score: 2.0E-11coord: 67..83 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G08850	Melon (DHL92) v3.6.1	cpimedB292
CSPI04G08850	Melon (DHL92) v3.6.1	cpimedB312
CSPI04G08850	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G08850	Silver-seed gourd	carcpiB0979
CSPI04G08850	Silver-seed gourd	carcpiB1056
CSPI04G08850	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G08850	Watermelon (97103) v2	cpiwmbB283
CSPI04G08850	Cucumber (Gy14) v1	cgycpiB585
CSPI04G08850	Cucurbita maxima (Rimu)	cmacpiB340
CSPI04G08850	Cucurbita maxima (Rimu)	cmacpiB717
CSPI04G08850	Cucurbita moschata (Rifu)	cmocpiB330
CSPI04G08850	Cucurbita moschata (Rifu)	cmocpiB711
CSPI04G08850	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G08850	Melon (DHL92) v3.5.1	cpimeB298
CSPI04G08850	Melon (DHL92) v3.5.1	cpimeB320
CSPI04G08850	Watermelon (Charleston Gray)	cpiwcgB285
CSPI04G08850	Cucurbita pepo (Zucchini)	cpecpiB222
CSPI04G08850	Cucurbita pepo (Zucchini)	cpecpiB401