CSPI04G08390 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G08390
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	Chr4 : 6138905 .. 6140176 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATTTCTCTGATTTCTTGGAGAGATCAGTTGAGATATTCATGGATGATTTCTCGATCTTTAGGGAATCTTTCAAAGAATGTCTAAATAGTTTGGAGGAAGTAATGGAGAACTGTGAAGAGACACGACTCTTGTTGAACTGGGAGAAGCATCATTGCATGGTGAAAGAAGGAATTGTGCTTGGACACAAAGTCTCCAATGCAGGATTCGAAGTAGACTCCACAAAAATTGATGTAGTTAGTAAGTTGCCACCACCTTGTGATGTTAAGCCAGTAAGAAGCTTTTTGGGCCACGTTGGGTTTTATAGAAGATTTTTATTTGTGGGTTCTCTCAGATTGCCAAACTATTGAGTAACCTATTATGCATCGATCAACCCTTTATTTTCGATGAAAAGTGTAACCAAATGTTTCATGTTATCAAAGACGGGTTGACCTAAGCACCTATCCTCATAACACAAGATCGGTCACAACCATTTGAACTCATGTGTGACGTAGGTGACGTAGCGATAAGGGCTATATTGGGTCAGAAGAAGAATAAGGTGATTCATCCAATCTACTATGCTAACAAGGTTCTCAATGAAGCACAAGAAAATTATACCACCACCAAGAAGAAATTGTTAGTGGCCGTGTTTACGATGGAAAAATTCAGGAGTTACATCCTTGGCACCAAAGTTACGGTGCATTCTAATCATTCTGCGATCAGATATCTCATGGCAAAAAATGATGTTAAACCGCGGTTAATAAGATCATAGACTGCAAAGGGACTGAGAACCAAGTAGCGGATCATTTATCACATCTTCGGAATGCAGAACTTTAATGCGAAAAGACAAATATTGAAGAAATATTTTTAGATGAGCAGCTCTTTTACGTTGAAATAAAAGAACCTTGGTATGTAGACATAGTCAGCTATCTTGTTTGTAAGGTTTGGCCACAAGATTTCAATAGCCAGAAATGAAAGAAGTTATTTCATGAATATCGCTTTTATAGGTGGGATGAGCCTTTCCTTTACAAATTTGACGCATACCATCTATTAAGACGGTGTGTCTCAAAATATGAAACAACTGACATACTAGCCAAATATCATGAAGCATCATATGGAGGACATGTTGGTGGACAAAAGACAGAGGCAAAATTATTGCAAAGTGGGTATTTCTAGACTGCCATTTTCCAGGACGAGGGAAATTTTGTGGTCAAATGCGACAGGTGTCAGAGGACGGGAAATCTGTGTCGCCACGACGAATTACCTCAGAAACCCATCTTCGAGATTGA

mRNA sequence

ATGGTTGATTTCTCTGATTTCTTGGAGAGATCAGTTGAGATATTCATGGATGATTTCTCGATCTTTAGGGAATCTTTCAAAGAATGTCTAAATAGTTTGGAGGAAGTAATGGAGAACTGTGAAGAGACACGACTCTTGTTGAACTGGGAGAAGCATCATTGCATGGTGAAAGAAGGAATTGTGCTTGGACACAAAGTCTCCAATGCAGGATTCGAAGTAGACTCCACAAAAATTGATGTAGTTAGTAAGTTGCCACCACCTTGTGATGTTAAGCCAGTAAGAAGCTTTTTGGGCCACGTTGGGTTTTATAGAAGATTTTTATTTGTGGGTGACGTAGCGATAAGGGCTATATTGGGTCAGAAGAAGAATAAGGTGATTCATCCAATCTACTATGCTAACAAGGTTCTCAATGAAGCACAAGAAAATTATACCACCACCAAGAAGAAATTGTTAGTGGCCGTGTTTACGATGGAAAAATTCAGGAGTTACATCCTTGGCACCAAAGTTACGGTGCATTCTAATCATTCTGCGATCAGATATCTCATGGCAAAAAATGATGTTAAACCGCGGTGGGATGAGCCTTTCCTTTACAAATTTGACGCATACCATCTATTAAGACGGTGTGTCTCAAAATATGAAACAACTGACATACTAGCCAAATATCATGAAGCATCATATGGAGGACATGTGTCAGAGGACGGGAAATCTGTGTCGCCACGACGAATTACCTCAGAAACCCATCTTCGAGATTGA

Coding sequence (CDS)

ATGGTTGATTTCTCTGATTTCTTGGAGAGATCAGTTGAGATATTCATGGATGATTTCTCGATCTTTAGGGAATCTTTCAAAGAATGTCTAAATAGTTTGGAGGAAGTAATGGAGAACTGTGAAGAGACACGACTCTTGTTGAACTGGGAGAAGCATCATTGCATGGTGAAAGAAGGAATTGTGCTTGGACACAAAGTCTCCAATGCAGGATTCGAAGTAGACTCCACAAAAATTGATGTAGTTAGTAAGTTGCCACCACCTTGTGATGTTAAGCCAGTAAGAAGCTTTTTGGGCCACGTTGGGTTTTATAGAAGATTTTTATTTGTGGGTGACGTAGCGATAAGGGCTATATTGGGTCAGAAGAAGAATAAGGTGATTCATCCAATCTACTATGCTAACAAGGTTCTCAATGAAGCACAAGAAAATTATACCACCACCAAGAAGAAATTGTTAGTGGCCGTGTTTACGATGGAAAAATTCAGGAGTTACATCCTTGGCACCAAAGTTACGGTGCATTCTAATCATTCTGCGATCAGATATCTCATGGCAAAAAATGATGTTAAACCGCGGTGGGATGAGCCTTTCCTTTACAAATTTGACGCATACCATCTATTAAGACGGTGTGTCTCAAAATATGAAACAACTGACATACTAGCCAAATATCATGAAGCATCATATGGAGGACATGTGTCAGAGGACGGGAAATCTGTGTCGCCACGACGAATTACCTCAGAAACCCATCTTCGAGATTGA

Homology

[Close]

BLAST of CSPI04G08390 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-09
Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = 1


Query: 8   LERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLGHKVS 67
           L +   +++DD  IF  S  E LNS++ V     +  L L  +K   + KE   LGH V+
Sbjct: 356 LNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVT 415

Query: 68  NAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFL 108
             G + +  K+  +   P P   K +R+FLG  G+YR+F+
Sbjct: 416 PDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFI 455

[Close]

BLAST of CSPI04G08390 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-09
Identity = 32/100 (32.00%), Postives = 53/100 (53.00%), Query Frame = 1


Query: 8   LERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLGHKVS 67
           L +   +++DD  +F  S  E L SL  V E   +  L L  +K   + +E   LGH ++
Sbjct: 357 LNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLT 416

Query: 68  NAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFL 108
             G + +  KI+ + K P P   K +++FLG  G+YR+F+
Sbjct: 417 PDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFI 456

[Close]

BLAST of CSPI04G08390 vs. TrEMBL
Match: A0A151U533_CAJCA (Transposon Ty3-I Gag-Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_007083 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.2e-60
Identity = 115/203 (56.65%), Postives = 149/203 (73.40%), Query Frame = 1


Query: 4   FSDFLERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLG 63
           FSD +E+ +EIFMDDFS+F  SF  CL +L  V+  C ET L+LNWEK H MV EGIVLG
Sbjct: 54  FSDLVEKCIEIFMDDFSVFGASFDTCLENLNIVLRRCIETNLVLNWEKCHFMVTEGIVLG 113

Query: 64  HKVSNAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFL---------------- 123
           HK+S  G EVD  K++V+SKLPPP +VK +RSFLGH GFYRRF+                
Sbjct: 114 HKISGKGIEVDPAKVEVISKLPPPANVKGIRSFLGHAGFYRRFIQDFSKIAKPLSNLLVK 173

Query: 124 FVGDVAIRAILGQKKNKVIHPIYYANKVLNEAQENYTTTKKKLLVAVFTMEKFRSYILGT 183
            V D A+ A+LGQ+KNK+ H I+YA+KVLNEAQ NY TT+K+LL  V+ +EKFRSY++G+
Sbjct: 174 DVNDYAVGAVLGQRKNKIFHVIHYASKVLNEAQMNYATTEKELLAIVYALEKFRSYLIGS 233

Query: 184 KVTVHSNHSAIRYLMAKNDVKPR 191
           K+TV ++H+AI+YL+ K+D KPR
Sbjct: 234 KITVFTDHAAIKYLLTKSDSKPR 256

[Close]

BLAST of CSPI04G08390 vs. TrEMBL
Match: A0A151R7X5_CAJCA (Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_040083 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.3e-57
Identity = 109/203 (53.69%), Postives = 147/203 (72.41%), Query Frame = 1


Query: 4   FSDFLERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLG 63
           FSD +E+ +E+FMDDFS+F  SF  CL++L+ V++ C ET L+LNWEK H MV EGIVLG
Sbjct: 681 FSDLVEKCIEVFMDDFSVFGSSFDTCLDNLDTVLKRCVETNLVLNWEKCHFMVTEGIVLG 740

Query: 64  HKVSNAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFL---------------- 123
           HK+S  G EVD  KI+V+ KLPPP +VK ++SFLGH GFYRRF+                
Sbjct: 741 HKISCRGIEVDKAKIEVIEKLPPPVNVKGIKSFLGHAGFYRRFIKDFSKIAKPLSNLLNK 800

Query: 124 FVGDVAIRAILGQKKNKVIHPIYYANKVLNEAQENYTTTKKKLLVAVFTMEKFRSYILGT 183
              D AI A+LGQ+K KV H I+YA+KVLN+ Q NY TT+K+LL  V+ +EKFR+Y++G+
Sbjct: 801 DTPDYAIGAVLGQRKEKVFHVIHYASKVLNDTQANYATTEKELLAIVYALEKFRAYLIGS 860

Query: 184 KVTVHSNHSAIRYLMAKNDVKPR 191
           K+ V ++H+AI+YL+ K+D KPR
Sbjct: 861 KIIVFTDHAAIKYLLTKSDSKPR 883

[Close]

BLAST of CSPI04G08390 vs. TrEMBL
Match: A5BA23_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038951 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.9e-53
Identity = 114/273 (41.76%), Postives = 164/273 (60.07%), Query Frame = 1


Query: 4   FSDFLERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLG 63
           FSD +ER +E+FMDD +++  +F+ECL +LE V+  C E  L+LNWEK H MV++GIVLG
Sbjct: 617 FSDMVERIMEVFMDDITVYGGTFEECLVNLEAVLHRCIEKDLVLNWEKCHFMVRQGIVLG 676

Query: 64  HKVSNAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFL---------------- 123
           H +S  G EVD  K+++++KLP P  VK VR FLGH GFYRRF+                
Sbjct: 677 HIISERGIEVDKAKVELIAKLPSPTTVKGVRQFLGHAGFYRRFIKGFSSLSKPLCELLAK 736

Query: 124 ---FV---GDVAIRAILGQKKNKVIHPIYYANKVLNEAQENYTTTKKKLLVAVFTMEKFR 183
              F+    D AI A+LGQ+++   + IYYA+K LNEAQ NYTTT+K+LL  VF ++KFR
Sbjct: 737 DXKFIWDESDFAIGAVLGQREDGKPYVIYYASKTLNEAQRNYTTTEKELLAVVFALDKFR 796

Query: 184 SYILGTKVTVHSNHSAIRYLMAKNDVKPR-------------------------WDEPFL 230
           +Y++G+ + V ++HS +   + K   K +                         W+EPFL
Sbjct: 797 AYLVGSFIIVFTDHSXLEVFIDKARCKSKITGEIPSEWNAQDRKHFFAKIHSYYWEEPFL 856

[Close]

BLAST of CSPI04G08390 vs. TrEMBL
Match: A5AJD5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029280 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.1e-49
Identity = 101/202 (50.00%), Postives = 139/202 (68.81%), Query Frame = 1


Query: 4    FSDFLERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLG 63
            FSD +ER +E+FMDD +I+  +F+ECL +LE V+  C E  L+LNWEK H MV++GIVLG
Sbjct: 1058 FSDMVERIMEVFMDDITIYGGTFEECLVNLEAVLHRCIEKDLVLNWEKCHFMVRQGIVLG 1117

Query: 64   HKVSNAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFLFV-------------- 123
            H +S  G E D  K++++ KLP P  VK VR FLGH GFYRRF+ V              
Sbjct: 1118 HIISEKGIEADKAKVELIVKLPSPTTVKGVRQFLGHAGFYRRFIKVRAPNWQLPFELMCD 1177

Query: 124  -GDVAIRAILGQKKNKVIHPIYYANKVLNEAQENYTTTKKKLLVAVFTMEKFRSYILGTK 183
              D AI A+LGQ+++   + IYYA+K LNEAQ NYTTT+K+LL  VF ++KF++Y++G+ 
Sbjct: 1178 ASDFAIGAVLGQREDGKPYVIYYASKTLNEAQRNYTTTEKELLDVVFALDKFQAYLVGSF 1237

Query: 184  VTVHSNHSAIRYLMAKNDVKPR 191
            + V +NHSA++YL+ K D K R
Sbjct: 1238 IIVFTNHSALKYLLTKQDAKAR 1259

[Close]

BLAST of CSPI04G08390 vs. TrEMBL
Match: A5AVQ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015550 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.5e-49
Identity = 102/209 (48.80%), Postives = 142/209 (67.94%), Query Frame = 1


Query: 4    FSDFLERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLG 63
            FSD +ER +E+FMDD +++  +F+ECL +LE V+  C E  L+LNWEK H MV++GIVLG
Sbjct: 850  FSDMVERIMEVFMDDITVYGGTFEECLVNLEAVLHRCIEKDLVLNWEKCHFMVRQGIVLG 909

Query: 64   HKVSNAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFL---------------- 123
            H +S  G EVD  K+++++KLP P  VK VR FLGH GFYRRF+                
Sbjct: 910  HIISEKGIEVDKAKVELIAKLPSPTTVKGVRQFLGHAGFYRRFIKGFSSLSKPLCELLAK 969

Query: 124  ---FV---GDVAIRAILGQKKNKVIHPIYYANKVLNEAQENYTTTKKKLLVAVFTMEKFR 183
               F+    D AI A+LGQ+++   + IYYA+K LNEAQ NYTTTKK+LLV VF ++KFR
Sbjct: 970  DAKFIWDESDFAIGAVLGQREDGKPYVIYYASKTLNEAQRNYTTTKKELLVVVFALDKFR 1029

Query: 184  SYILGTKVTVHSNHSAIRYLMAKNDVKPR 191
            +Y++G+ + V ++HSA++ L+ K D K R
Sbjct: 1030 AYLVGSFIIVFTDHSALKSLLTKQDAKAR 1058

[Close]

BLAST of CSPI04G08390 vs. NCBI nr
Match: gi|1012363222|gb|KYP74405.1| (Transposon Ty3-I Gag-Pol polyprotein, partial [Cajanus cajan])

HSP 1 Score: 240.0 bits (611), Expect = 4.6e-60
Identity = 115/203 (56.65%), Postives = 149/203 (73.40%), Query Frame = 1


Query: 4   FSDFLERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLG 63
           FSD +E+ +EIFMDDFS+F  SF  CL +L  V+  C ET L+LNWEK H MV EGIVLG
Sbjct: 54  FSDLVEKCIEIFMDDFSVFGASFDTCLENLNIVLRRCIETNLVLNWEKCHFMVTEGIVLG 113

Query: 64  HKVSNAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFL---------------- 123
           HK+S  G EVD  K++V+SKLPPP +VK +RSFLGH GFYRRF+                
Sbjct: 114 HKISGKGIEVDPAKVEVISKLPPPANVKGIRSFLGHAGFYRRFIQDFSKIAKPLSNLLVK 173

Query: 124 FVGDVAIRAILGQKKNKVIHPIYYANKVLNEAQENYTTTKKKLLVAVFTMEKFRSYILGT 183
            V D A+ A+LGQ+KNK+ H I+YA+KVLNEAQ NY TT+K+LL  V+ +EKFRSY++G+
Sbjct: 174 DVNDYAVGAVLGQRKNKIFHVIHYASKVLNEAQMNYATTEKELLAIVYALEKFRSYLIGS 233

Query: 184 KVTVHSNHSAIRYLMAKNDVKPR 191
           K+TV ++H+AI+YL+ K+D KPR
Sbjct: 234 KITVFTDHAAIKYLLTKSDSKPR 256

[Close]

BLAST of CSPI04G08390 vs. NCBI nr
Match: gi|1012326891|gb|KYP38652.1| (Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan])

HSP 1 Score: 229.6 bits (584), Expect = 6.2e-57
Identity = 109/203 (53.69%), Postives = 147/203 (72.41%), Query Frame = 1


Query: 4   FSDFLERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLG 63
           FSD +E+ +E+FMDDFS+F  SF  CL++L+ V++ C ET L+LNWEK H MV EGIVLG
Sbjct: 681 FSDLVEKCIEVFMDDFSVFGSSFDTCLDNLDTVLKRCVETNLVLNWEKCHFMVTEGIVLG 740

Query: 64  HKVSNAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFL---------------- 123
           HK+S  G EVD  KI+V+ KLPPP +VK ++SFLGH GFYRRF+                
Sbjct: 741 HKISCRGIEVDKAKIEVIEKLPPPVNVKGIKSFLGHAGFYRRFIKDFSKIAKPLSNLLNK 800

Query: 124 FVGDVAIRAILGQKKNKVIHPIYYANKVLNEAQENYTTTKKKLLVAVFTMEKFRSYILGT 183
              D AI A+LGQ+K KV H I+YA+KVLN+ Q NY TT+K+LL  V+ +EKFR+Y++G+
Sbjct: 801 DTPDYAIGAVLGQRKEKVFHVIHYASKVLNDTQANYATTEKELLAIVYALEKFRAYLIGS 860

Query: 184 KVTVHSNHSAIRYLMAKNDVKPR 191
           K+ V ++H+AI+YL+ K+D KPR
Sbjct: 861 KIIVFTDHAAIKYLLTKSDSKPR 883

[Close]

BLAST of CSPI04G08390 vs. NCBI nr
Match: gi|147864296|emb|CAN78802.1| (hypothetical protein VITISV_038951 [Vitis vinifera])

HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53
Identity = 114/273 (41.76%), Postives = 164/273 (60.07%), Query Frame = 1


Query: 4   FSDFLERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLG 63
           FSD +ER +E+FMDD +++  +F+ECL +LE V+  C E  L+LNWEK H MV++GIVLG
Sbjct: 617 FSDMVERIMEVFMDDITVYGGTFEECLVNLEAVLHRCIEKDLVLNWEKCHFMVRQGIVLG 676

Query: 64  HKVSNAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFL---------------- 123
           H +S  G EVD  K+++++KLP P  VK VR FLGH GFYRRF+                
Sbjct: 677 HIISERGIEVDKAKVELIAKLPSPTTVKGVRQFLGHAGFYRRFIKGFSSLSKPLCELLAK 736

Query: 124 ---FV---GDVAIRAILGQKKNKVIHPIYYANKVLNEAQENYTTTKKKLLVAVFTMEKFR 183
              F+    D AI A+LGQ+++   + IYYA+K LNEAQ NYTTT+K+LL  VF ++KFR
Sbjct: 737 DXKFIWDESDFAIGAVLGQREDGKPYVIYYASKTLNEAQRNYTTTEKELLAVVFALDKFR 796

Query: 184 SYILGTKVTVHSNHSAIRYLMAKNDVKPR-------------------------WDEPFL 230
           +Y++G+ + V ++HS +   + K   K +                         W+EPFL
Sbjct: 797 AYLVGSFIIVFTDHSXLEVFIDKARCKSKITGEIPSEWNAQDRKHFFAKIHSYYWEEPFL 856

[Close]

BLAST of CSPI04G08390 vs. NCBI nr
Match: gi|645245794|ref|XP_008229049.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328437 [Prunus mume])

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 98/187 (52.41%), Postives = 138/187 (73.80%), Query Frame = 1


Query: 4    FSDFLERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLG 63
            FSD +ER +E+FMDDFS+F +SF +CL++L +V+  CE+T L+LNWEK H MV +GIVLG
Sbjct: 863  FSDMVERFIEVFMDDFSVFADSFDQCLHNLSKVLARCEQTNLVLNWEKCHFMVNQGIVLG 922

Query: 64   HKVSNAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFLFVGDVAIRAILGQKKN 123
            H +S+ G EVD  KID+++ +P P  VK VRSFLGH GFY RF       I+     + +
Sbjct: 923  HVISSKGIEVDKAKIDLIASMPSPTSVKEVRSFLGHAGFYSRF-------IKEFSKIRVD 982

Query: 124  KVIHPIYYANKVLNEAQENYTTTKKKLLVAVFTMEKFRSYILGTKVTVHSNHSAIRYLMA 183
            K  H IYYA++ LN+AQ NY+TT+K+LL  +F ++KFRSY++  KV V+++H+A++YL+A
Sbjct: 983  KKPHAIYYASRTLNDAQLNYSTTEKELLAVIFALKKFRSYLITNKVIVYTDHAALKYLLA 1042

Query: 184  KNDVKPR 191
            K D KPR
Sbjct: 1043 KKDAKPR 1042

[Close]

BLAST of CSPI04G08390 vs. NCBI nr
Match: gi|685266492|ref|XP_009120064.1| (PREDICTED: uncharacterized protein LOC103844987 [Brassica rapa])

HSP 1 Score: 210.7 bits (535), Expect = 3.0e-51
Identity = 113/243 (46.50%), Postives = 145/243 (59.67%), Query Frame = 1


Query: 4    FSDFLERSVEIFMDDFSIFRESFKECLNSLEEVMENCEETRLLLNWEKHHCMVKEGIVLG 63
            FSD +E  VE+FMDDFS++  SF  CL++L  V++ CE+T L+LNWEK H MVKEGIVLG
Sbjct: 1076 FSDLIEDVVEVFMDDFSVYGSSFSACLSNLCRVLQRCEDTNLVLNWEKCHFMVKEGIVLG 1135

Query: 64   HKVSNAGFEVDSTKIDVVSKLPPPCDVKPVRSFLGHVGFYRRFL---------------- 123
            HK+S  G EVD  KIDV+  LPPP  VK +RSFLGH GFYRRF+                
Sbjct: 1136 HKISEKGIEVDKAKIDVMVGLPPPKTVKDIRSFLGHAGFYRRFIKDFSMITRPLTRLLCK 1195

Query: 124  ---FVGDV-------------------------------------AIRAILGQKKNKVIH 183
               F  DV                                     A+ A+LGQKKN   H
Sbjct: 1196 EATFSFDVECLQAFKKLKGELVSAPIVQPPDWDLPFEIMCDASDYAVGAVLGQKKNGKTH 1255

Query: 184  PIYYANKVLNEAQENYTTTKKKLLVAVFTMEKFRSYILGTKVTVHSNHSAIRYLMAKNDV 191
             IYYA++ LN+AQ  Y TT+K++L  VF  EKFRSY++G+KV V+++H+A+R+L+AK D 
Sbjct: 1256 VIYYASQTLNDAQMKYATTEKEMLAIVFAFEKFRSYLVGSKVIVYTDHAALRHLLAKKDA 1315

The following BLAST results are available for this feature:

BLAST of CSPI04G08390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POL2_DROME	4.8e-09	33.00	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
POL3_DROME	6.3e-09	32.00	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of CSPI04G08390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151U533_CAJCA	3.2e-60	56.65	Transposon Ty3-I Gag-Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_007083 P...	[more]
A0A151R7X5_CAJCA	4.3e-57	53.69	Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_040083 PE=4 SV=1	[more]
A5BA23_VITVI	2.9e-53	41.76	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038951 PE=4 SV=1	[more]
A5AJD5_VITVI	1.1e-49	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029280 PE=4 SV=1	[more]
A5AVQ5_VITVI	2.5e-49	48.80	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015550 PE=4 SV=1	[more]

BLAST of CSPI04G08390 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G08390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012363222\|gb\|KYP74405.1\|	4.6e-60	56.65	Transposon Ty3-I Gag-Pol polyprotein, partial [Cajanus cajan]	[more]
gi\|1012326891\|gb\|KYP38652.1\|	6.2e-57	53.69	Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]	[more]
gi\|147864296\|emb\|CAN78802.1\|	4.2e-53	41.76	hypothetical protein VITISV_038951 [Vitis vinifera]	[more]
gi\|645245794\|ref\|XP_008229049.1\|	1.7e-51	52.41	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328437 [Prunus mum...	[more]
gi\|685266492\|ref\|XP_009120064.1\|	3.0e-51	46.50	PREDICTED: uncharacterized protein LOC103844987 [Brassica rapa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G08390.1	CSPI04G08390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 23..43 scor
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 4..229 score: 1.3
None	No IPR available	PANTHER	PTHR24559:SF180	SUBFAMILY NOT NAMED	coord: 4..229 score: 1.3
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 4..191 score: 5.78

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G08390	Cucurbita maxima (Rimu)	cmacpiB344
CSPI04G08390	Cucurbita maxima (Rimu)	cmacpiB418
CSPI04G08390	Cucurbita moschata (Rifu)	cmocpiB335
CSPI04G08390	Cucurbita moschata (Rifu)	cmocpiB406
CSPI04G08390	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G08390	Melon (DHL92) v3.5.1	cpimeB312
CSPI04G08390	Melon (DHL92) v3.5.1	cpimeB318
CSPI04G08390	Watermelon (Charleston Gray)	cpiwcgB341
CSPI04G08390	Watermelon (97103) v1	cpiwmB317
CSPI04G08390	Cucurbita pepo (Zucchini)	cpecpiB226
CSPI04G08390	Bottle gourd (USVL1VR-Ls)	cpilsiB305
CSPI04G08390	Melon (DHL92) v3.6.1	cpimedB303
CSPI04G08390	Melon (DHL92) v3.6.1	cpimedB310
CSPI04G08390	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G08390	Silver-seed gourd	carcpiB1028
CSPI04G08390	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G08390	Watermelon (97103) v2	cpiwmbB331
CSPI04G08390	Wax gourd	cpiwgoB382
CSPI04G08390	Cucumber (Gy14) v1	cgycpiB411