CSPI04G08260 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G08260
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUbiquitin, putative
LocationChr4 : 5990119 .. 5992775 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAAGTTGGGTGAGATATAAAATAGAGAGCGTTTCTTCTTATAAGAGAGTTTTGTATTCTTCAGTAAGAGAGAAAGTTCGTAACTCCTATTATATATAGTAATTTTTTTTATTCTTGTACGTGGTGTTTATCCAACTTGTTTAGAAGTTTTCTATGTAAGGTTCTTGTATTCTATCCTTTCCCTTCTTCATCTTTGTTATTGTTGTTCTCAATCTACTTTAGTTGTAATCTTACTCTATTCGATCACCGTATTCACAACATTTTATTTGTTCACTAAATTTCTTAAACACATAGTTATGAGCGAGCACTTGAAGTCTTTATGAATGTGAAGTTAAAATGCATTAGTTAGAAACCAAAACATACAAAAATGTCTAGAAAAGTAGGGATTGGGAAGAGAGTAGATCCGTACAATGGAGATAAAATCTTTGATCTTTAAGGAAGATGAAGACTACTAAATTCTAATGAATTAAGATCATTTTTTTTAGAATAATAGAGTAGAATAAAATATAGTAATAGGGTTTGAATATGAACGTTGGAGAAAGAAATTAGATATTTGGAAAAAATAAAAGAAAAAAAAAGGAAAAGGAAAGATAAAAATAGTAGTAATAATTAAGCAGAAAGTGAATGGGTGATGTGTTAGAATGAGTTGTTTGTAAAATGAGAAAAAGAAAAGGTAATTTAAAAGGGAAAAAGAAAGACGGGAGATGTGCGTGGTGTAGACAGTCATCTAGTAATAACAATAACGATAGAGAGTGTCGATGAGTGACGTATCCATAAATCATATGTAGGACACAACCACTATACCAAAATAGAATATAGTAATAATAATACATTACGTTCCAAAATTGGAAGTGCTTTTTTTTTTCTTTAAAGTTCCTTTCTAAACTATGAAACATTATATATTGATGGAATAAATTGAAATAAAATATAAAATCTAAATCGTAATAATTATGTAGCAAAAGCAAACCCTTAAACAAAGAGAGCGTATAAAATGGCTCATCGATAGGAGAGTGTAGCCAACCAGAAGTAAAGCAGAGAGAGCGTTCGTCGGCGACACAGGATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACGATTACGTTGGAAGTTGAGTCCAGCGATACCATCGACAATGTCAAAGCTAAGATCCAGGATAAGGAAGGTTGGATTTCTGGTTTCTGAAGCAATATTTCTCTCTTATTCTTTTGGATTTTTACAATACTGGGTGCATGTTTCAGGTATTCCCCCTGACCAGCAGAGACTTATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGAACGCTAGCTGACTACAATATCCAGAAAGGTTTGTACCATGCCTTTCATTTTCTTTTTCTTTCCCATTGAGAAAATTAAATTGGGCTAATGAAGTAAAATAAAAATAGTGTAACGTTTGTGGCGAGGTAATCTTATCTGCTGGGTATGCTTTAGTGGAAACTTTGAATAGGCATGGTTTGATAGTTAATGGGTTGTATGTTCATGTGAAAGAAACTGGATTTGAAGTTTCAGACTATCAAGGAATGACTTCTAACGTTCAGCTATCTAGTTTTATTGGAAAAAAAAAAACTTAACTTTTCTGGTTGCGAAACAATAAGGAATTTGAGCTTGTTCGGTGTTTTTAGCTATTGAGTATTGAACAGAGGATCTTTAGGAATTGATAGGTCTCTAACTGTTAATCTGTGGTTTAATCTTAAATTTAGGGTTTAGCTTACGTGAATTTTGGGAGTTCAATTAGAGCCCTTTAAGTTTTTCTTAAGTGCATTGTTCTCAGAAGTGAAACTTGAATCCCATTGCTTTGTTTTTTTTTTTTTTAATTTTGCAGAGTCAACACTACACTTGGTGCTCAGGCTTCGTGGTGGTATTATTGAGCCGTCTTTGATGGCATTGGCTAGGAAGTACAATCAGGACAAGATGATCTGCCGCAAGTAAGCTTCAATAATTTGCTTAATTATTTGTGTAACAATGTTCTGTTTGGTTCTATACGAAACTGGTTGTTGTTTAATCTTACAATACATTGTTCATGGAGTTGGATTTGGTGAGTGATGGGTGGTTTATATGTTTGCGTAGTCTGTTTCAATTTCTGTAGTACTAAGTTCAGTCTCCAAACCCTCTGCCAACACATCCTATTTTTTTAGACCCTGAATAACTGAATGCCTTGGGGAACATCTAATTTATACTGTATATCCATTTACGGATGCTTACATACTCGTTATTTGAAGTCAATTGGGTACAATTAAATTGCAGGTGCTATGCCCGCCTGCACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGGTATTTTTTCATTCACTCTAAAAATTTGGCTATAATTTTTTTGTTTGCTAATATGATTAACTTTAAATTTCCTGCATAACTTGTAAACTTTTTTGCTTAATTGTTTGATGTGCAGTTGAGGCCAAAGAAGAAAATCAAGTAGACTGTTGATTTTGAGAGAGGAAATCTATACAAAAGTTTATGCATTGATTTATTTTCTGGATTGCTTATGCCTAGAACCATCTGCTTTATACTCATTTGGAGTTTGAATTGTTATGTTTTTTGCTTTTAAATATTCTCGAGTAATGGAATATTTTGTTTTTGAAATGAGTACGAAAATTTCAGC

mRNA sequence

ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACGATTACGTTGGAAGTTGAGTCCAGCGATACCATCGACAATGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCTGACCAGCAGAGACTTATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGAACGCTAGCTGACTACAATATCCAGAAAGAGTCAACACTACACTTGGTGCTCAGGCTTCGTGGTGGTATTATTGAGCCGTCTTTGATGGCATTGGCTAGGAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCCCGCCTGCACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGTTGAGGCCAAAGAAGAAAATCAAGTAG

Coding sequence (CDS)

ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACGATTACGTTGGAAGTTGAGTCCAGCGATACCATCGACAATGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCTGACCAGCAGAGACTTATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGAACGCTAGCTGACTACAATATCCAGAAAGAGTCAACACTACACTTGGTGCTCAGGCTTCGTGGTGGTATTATTGAGCCGTCTTTGATGGCATTGGCTAGGAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCCCGCCTGCACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGTTGAGGCCAAAGAAGAAAATCAAGTAG
Homology
[Close]
BLAST of CSPI04G08260 vs. Swiss-Prot
Match: RL40_NICSY (Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=2 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 9.9e-67
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. Swiss-Prot
Match: RL40A_ARATH (Ubiquitin-60S ribosomal protein L40-1 OS=Arabidopsis thaliana GN=RPL40A PE=1 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-66
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. Swiss-Prot
Match: RL40A_ORYSJ (Ubiquitin-60S ribosomal protein L40-1 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-66
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. Swiss-Prot
Match: RL40B_ARATH (Ubiquitin-60S ribosomal protein L40-2 OS=Arabidopsis thaliana GN=RPL40B PE=1 SV=2)

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-66
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. Swiss-Prot
Match: RL40B_ORYSJ (Ubiquitin-60S ribosomal protein L40-2 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-2 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-66
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. TrEMBL
Match: A0A078D9Z2_BRANA (BnaA03g16540D protein OS=Brassica napus GN=BnaC04g09150D PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. TrEMBL
Match: W9R8I7_9ROSA (Ubiquitin-60S ribosomal protein L40 OS=Morus notabilis GN=L484_001656 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. TrEMBL
Match: I3T1N0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. TrEMBL
Match: K7KG22_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 26  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 85

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 86  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 145

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 146 LRPKKKIK 153

[Close]
BLAST of CSPI04G08260 vs. TrEMBL
Match: A0A0B0P7T3_GOSAR (Ubiquitin-60S ribosomal L40 OS=Gossypium arboreum GN=F383_00747 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. TAIR10
Match: AT3G52590.1 (AT3G52590.1 ubiquitin extension protein 1)

HSP 1 Score: 253.1 bits (645), Expect = 9.5e-68
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. TAIR10
Match: AT2G36170.1 (AT2G36170.1 Ubiquitin supergroup;Ribosomal protein L40e)

HSP 1 Score: 253.1 bits (645), Expect = 9.5e-68
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. TAIR10
Match: AT5G20620.1 (AT5G20620.1 ubiquitin 4)

HSP 1 Score: 150.2 bits (378), Expect = 8.7e-37
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

[Close]
BLAST of CSPI04G08260 vs. TAIR10
Match: AT1G65350.1 (AT1G65350.1 ubiquitin 13)

HSP 1 Score: 150.2 bits (378), Expect = 8.7e-37
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

[Close]
BLAST of CSPI04G08260 vs. TAIR10
Match: AT4G05320.2 (AT4G05320.2 polyubiquitin 10)

HSP 1 Score: 150.2 bits (378), Expect = 8.7e-37
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

[Close]
BLAST of CSPI04G08260 vs. NCBI nr
Match: gi|821324966|ref|NP_001295699.1| (ubiquitin-60S ribosomal protein L40-like [Jatropha curcas])

HSP 1 Score: 255.0 bits (650), Expect = 7.1e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI04G08260 vs. NCBI nr
Match: gi|720049975|ref|XP_010271616.1| (PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nelumbo nucifera])

HSP 1 Score: 255.0 bits (650), Expect = 7.1e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 24  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 83

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 84  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 143

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 144 LRPKKKIK 151

[Close]
BLAST of CSPI04G08260 vs. NCBI nr
Match: gi|590674407|ref|XP_007039159.1| (Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao])

HSP 1 Score: 255.0 bits (650), Expect = 7.1e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 24  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 83

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 84  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 143

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 144 LRPKKKIK 151

[Close]
BLAST of CSPI04G08260 vs. NCBI nr
Match: gi|595808385|ref|XP_007202754.1| (hypothetical protein PRUPE_ppa013349mg [Prunus persica])

HSP 1 Score: 254.6 bits (649), Expect = 9.2e-65
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKK+K
Sbjct: 121 LRPKKKVK 128

[Close]
BLAST of CSPI04G08260 vs. NCBI nr
Match: gi|302393724|sp|P49636.2|RL40_NICSY (RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=60S ribosomal protein L40; AltName: Full=CEP52; Flags: Precursor)

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-64
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

The following BLAST results are available for this feature:
BLAST of CSPI04G08260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL40_NICSY9.9e-6799.22Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=2 S... [more]
RL40A_ARATH1.7e-6699.22Ubiquitin-60S ribosomal protein L40-1 OS=Arabidopsis thaliana GN=RPL40A PE=1 SV=... [more]
RL40A_ORYSJ1.7e-6699.22Ubiquitin-60S ribosomal protein L40-1 OS=Oryza sativa subsp. japonica GN=Ub-CEP5... [more]
RL40B_ARATH1.7e-6699.22Ubiquitin-60S ribosomal protein L40-2 OS=Arabidopsis thaliana GN=RPL40B PE=1 SV=... [more]
RL40B_ORYSJ1.7e-6699.22Ubiquitin-60S ribosomal protein L40-2 OS=Oryza sativa subsp. japonica GN=Ub-CEP5... [more]
BLAST of CSPI04G08260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A078D9Z2_BRANA4.9e-65100.00BnaA03g16540D protein OS=Brassica napus GN=BnaC04g09150D PE=4 SV=1[more]
W9R8I7_9ROSA4.9e-65100.00Ubiquitin-60S ribosomal protein L40 OS=Morus notabilis GN=L484_001656 PE=4 SV=1[more]
I3T1N0_LOTJA4.9e-65100.00Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
K7KG22_SOYBN4.9e-65100.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B0P7T3_GOSAR4.9e-65100.00Ubiquitin-60S ribosomal L40 OS=Gossypium arboreum GN=F383_00747 PE=4 SV=1[more]
BLAST of CSPI04G08260 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52590.19.5e-6899.22 ubiquitin extension protein 1[more]
AT2G36170.19.5e-6899.22 Ubiquitin supergroup;Ribosomal protein L40e[more]
AT5G20620.18.7e-3798.70 ubiquitin 4[more]
AT1G65350.18.7e-3798.70 ubiquitin 13[more]
AT4G05320.28.7e-3798.70 polyubiquitin 10[more]
BLAST of CSPI04G08260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|821324966|ref|NP_001295699.1|7.1e-65100.00ubiquitin-60S ribosomal protein L40-like [Jatropha curcas][more]
gi|720049975|ref|XP_010271616.1|7.1e-65100.00PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nelumbo nucifera][more]
gi|590674407|ref|XP_007039159.1|7.1e-65100.00Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao][more]
gi|595808385|ref|XP_007202754.1|9.2e-6599.22hypothetical protein PRUPE_ppa013349mg [Prunus persica][more]
gi|302393724|sp|P49636.2|RL40_NICSY1.6e-6499.22RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains: RecName: Full=Ubiqu... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR001975Ribosomal_L40e
IPR011332Ribosomal_zn-bd
IPR019954Ubiquitin_CS
IPR019956Ubiquitin
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G08260.1CSPI04G08260.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 3..74
score: 2.2
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 1..72
score: 3.0
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 1..76
score: 30
IPR001975Ribosomal protein L40ePFAMPF01020Ribosomal_L40ecoord: 78..127
score: 1.0
IPR001975Ribosomal protein L40eSMARTSM01377Ribosomal_L40e_3coord: 77..128
score: 3.6
IPR011332Zinc-binding ribosomal proteinunknownSSF57829Zn-binding ribosomal proteinscoord: 76..127
score: 2.93
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 27..52
scor
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 32..52
score: 4.6E-39coord: 53..74
score: 4.6E-39coord: 11..31
score: 4.6
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 1..85
score: 1.4
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..127
score: 7.3E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G08260Watermelon (Charleston Gray)cpiwcgB341
CSPI04G08260Watermelon (97103) v1cpiwmB317
CSPI04G08260Bottle gourd (USVL1VR-Ls)cpilsiB305
CSPI04G08260Melon (DHL92) v3.6.1cpimedB303
CSPI04G08260Cucumber (Gy14) v2cgybcpiB168
CSPI04G08260Silver-seed gourdcarcpiB1028
CSPI04G08260Cucumber (Chinese Long) v3cpicucB213
CSPI04G08260Watermelon (97103) v2cpiwmbB331
CSPI04G08260Wax gourdcpiwgoB367
CSPI04G08260Wax gourdcpiwgoB382
CSPI04G08260Cucumber (Gy14) v1cgycpiB411
CSPI04G08260Cucurbita maxima (Rimu)cmacpiB344
CSPI04G08260Cucurbita maxima (Rimu)cmacpiB418
CSPI04G08260Cucurbita moschata (Rifu)cmocpiB335
CSPI04G08260Cucurbita moschata (Rifu)cmocpiB406
CSPI04G08260Cucumber (Chinese Long) v2cpicuB182
CSPI04G08260Melon (DHL92) v3.5.1cpimeB312