CSPI04G07720 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G07720
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionLINE-1 reverse transcriptase isogeny
LocationChr4 : 5579976 .. 5581676 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCGTGTCAGTGATTTCAGACCCATAAGCTTAGTTACCTCCTTGTATAAAGTTATCTCCAAGGTACTTGCAACAAGACTTAAAAAAGTCCTTCCTTCGATAATTAATGATTCTCAGATGGCTTTTGTGGAGGGAAGGCAAATTCTTGATGCTATTTTGATTGCTTCTGAGGTTGTTGACCAATGGTCTTCAAAAGGCAGAAAAGGCGTTCTTTTGAAGCTTGATCTGGAGAAAGCTTATGACAAGGTGGATGGGTCTTTTCTTGATATGGCCATGAAACTTAAAAGGCTTTGGTAAGAAATGGAGGAGATGGATATGGGGCTGTTTGTCGACGACTAATTTTTCCATCATTGTCCAGGTAGGCCTAGAGGAAAGATTCTTGCTAAAAGGGGCATTCGTCAAGGAGATCCTCTTGCCCCTTTTCTTTTTACAATGGTGGGAGATGCTCTAAGCTGCCTTATTCACTACTGTAATGAGAAAAGGAGTTTAAAAGGCTTCCATTTTGAGAAATTGTCAGATGATTTAACCCACCTTCAGTATGTAGATGACACTTCTTTTTTCTTCCTGGGAGGATGGAAACTTGGAGACTTGGTGGAAGGTGATCAATATCTTTCTTCTAGGAGCCGGTTTATCCCTTAATAGATCCAAAATGTCCCTAATCAATATTAACCTTAATAGTGGTGACTTGACTCCTTATAGTAACTCTATGGGGTGCTCGGTTGATAGTCTTCCCTTTAAGTACTTGGGCTTTTCTATTGGAGGGGGTCGTAATAGAAAAGAGATGTGGAACACCCTTGAAGAGCGATTCAGATATAAAATCGACAGGTGGAGGAATGTGTCCCTCTCTAAAGGGGATAGGCTAACTCTGGTGCAATCAGTTCTTAATAGTCTTCCTTGTTAGTTTTTCTCCCTTGCTCAAGCTCCGGCCGGTGTTATCAATAGATTGGAAAAGATGATCAGGAATCTTGTTTAGACAGGAGGGTCTACTAATTCAATTGCCCACCTCGTCAAATGGGATTGTAATTCCCCTAATCTGTTATGGTGGTCTTGGGATTGGCTTGTTTAGGCAAAAGAACACTGCTCTTCTCACTAAATGGCTTTGGAGGTTTAGCTAGGAAGAAGCCTCCTTATGGAGACGTTTAATTGTGGTCATTTACAGCTTAGAGGAGAATGGGTGGTCTACTAAAGATCCGAACAGGGGAAAATCTTACAGATTATGGGCCGTATTTTGAAGCACAAGGAGACCTTTAAATTTTCAGCTTTCGTGCTGAGAAAAGGAACCAAAATCAGATTTTGGAAGGACAATTGGTGTGGCGTGGAGCCACTTGCAGAAAAATTCCCTAACTTGTTCTCCTTGTCATTGAATAAGGATGCTTATGTGGCTGAATGTTGGTGTATTGTTACTCATTCGTGGAACTTGAGCCTTAGAAGAAATATGCTCAATAACGAGATTGTCAATGTGGCCTCAATTTTAGAAATTCTTCATTCTTGGGCCCCTCAGATGGGGATGATTGCCTTAAATGAACTCCTAATATTGATGGCAGCTTTACTACGAAGTCTACTTTTCTCAAATTAACCAAGATCCCTTCCATTGTTGTTCATTTGATTCGTCATATTTGGAAGACTAAAATTCCAAAAAAATGTGAAATTTATCTTATGGTCGCTCGCTTACAGAAGCCTTAACACTCCTGAGAAGCT

mRNA sequence

ATGGCCCGTGTCAGTGATTTCAGACCCATAAGCTTAGTTACCTCCTTGTATAAAGTTATCTCCAAGGTACTTGCAACAAGACTTAAAAAAGTCCTTCCTTCGATAATTAATGATTCTCAGATGGCTTTTGTGGAGGGAAGGCAAATTCTTGATGCTATTTTGATTGCTTCTGAGGTTGTTGACCAATGGTCTTCAAAAGGCAGAAAAGGCGTTCTTTTGAAGCTTGATCTGGAGAAAGCTTATGACAAGGTGGATGGGTCTTTTCTTGATATGGCCATGAAACTTAAAAGGCTTTGGCCTAGAGGAAAGATTCTTGCTAAAAGGGGCATTCGTCAAGGAGATCCTCTTGCCCCTTTTCTTTTTACAATGGTGGGAGATGCTCTAAGCTGCCTTATTCACTACTGTAATGAGAAAAGGAGTTTAAAAGGCTTCCATTTTGAGAAATTGTCAGATGATTTAACCCACCTTCAGTATGTAGATGACACTTCTTTTTTCTTCCTGGGAGGATGGAAACTTGGAGACTTGGTGGAAGGTGATCAATATCTTTCTTCTAGGAGCCGTCTTCCCTTTAAGTACTTGGGCTTTTCTATTGGAGGGGGTCGTAATAGAAAAGAGATGTGGAACACCCTTGAAGAGCGATTCAGATATAAAATCGACAGGTGGAGGAATGTGTCCCTCTCTAAAGGGGATAGGCTAACTCTGGTGCAATCAGAGGGTCTACTAATTCAATTGCCCACCTCGTCAAATGGGATTGTAATTCCCCTAATCTGTTATGGTGGTCTTGGGATTGGCTTGTTTAGGCAAAAGAACACTGCTCTTCTCACTAAATGGCTTTGGAGATCCGAACAGGGGAAAATCTTACAGATTATGGGCCGTATTTTGAAGCACAAGGAGACCTTTAAATTTTCAGCTTTCGTGCTGAGAAAAGGAACCAAAATCAGATTTTGGAAGGACAATTGGTGTGGCGTGGAGCCACTTGCAGAAAAATTCCCTAACTTGTTCTCCTTGTCATTGAATAAGGATGCTTATGTGGCTGAATGTTGGTGTATTGTTACTCATTCGTGGAACTTGAGCCTTAGAAGAAATATGCTCAATAACGAGATTGTCAATGTGGCCTCAATTTTAGAAATTCTTCATTCTTGGGCCCCTCAGATGGGGATGATTGCCTTAAATGAACTCCTAATATTGATGGCAGCTTTACTACGAAGTCTACTTTTCTCAAATTAA

Coding sequence (CDS)

ATGGCCCGTGTCAGTGATTTCAGACCCATAAGCTTAGTTACCTCCTTGTATAAAGTTATCTCCAAGGTACTTGCAACAAGACTTAAAAAAGTCCTTCCTTCGATAATTAATGATTCTCAGATGGCTTTTGTGGAGGGAAGGCAAATTCTTGATGCTATTTTGATTGCTTCTGAGGTTGTTGACCAATGGTCTTCAAAAGGCAGAAAAGGCGTTCTTTTGAAGCTTGATCTGGAGAAAGCTTATGACAAGGTGGATGGGTCTTTTCTTGATATGGCCATGAAACTTAAAAGGCTTTGGCCTAGAGGAAAGATTCTTGCTAAAAGGGGCATTCGTCAAGGAGATCCTCTTGCCCCTTTTCTTTTTACAATGGTGGGAGATGCTCTAAGCTGCCTTATTCACTACTGTAATGAGAAAAGGAGTTTAAAAGGCTTCCATTTTGAGAAATTGTCAGATGATTTAACCCACCTTCAGTATGTAGATGACACTTCTTTTTTCTTCCTGGGAGGATGGAAACTTGGAGACTTGGTGGAAGGTGATCAATATCTTTCTTCTAGGAGCCGTCTTCCCTTTAAGTACTTGGGCTTTTCTATTGGAGGGGGTCGTAATAGAAAAGAGATGTGGAACACCCTTGAAGAGCGATTCAGATATAAAATCGACAGGTGGAGGAATGTGTCCCTCTCTAAAGGGGATAGGCTAACTCTGGTGCAATCAGAGGGTCTACTAATTCAATTGCCCACCTCGTCAAATGGGATTGTAATTCCCCTAATCTGTTATGGTGGTCTTGGGATTGGCTTGTTTAGGCAAAAGAACACTGCTCTTCTCACTAAATGGCTTTGGAGATCCGAACAGGGGAAAATCTTACAGATTATGGGCCGTATTTTGAAGCACAAGGAGACCTTTAAATTTTCAGCTTTCGTGCTGAGAAAAGGAACCAAAATCAGATTTTGGAAGGACAATTGGTGTGGCGTGGAGCCACTTGCAGAAAAATTCCCTAACTTGTTCTCCTTGTCATTGAATAAGGATGCTTATGTGGCTGAATGTTGGTGTATTGTTACTCATTCGTGGAACTTGAGCCTTAGAAGAAATATGCTCAATAACGAGATTGTCAATGTGGCCTCAATTTTAGAAATTCTTCATTCTTGGGCCCCTCAGATGGGGATGATTGCCTTAAATGAACTCCTAATATTGATGGCAGCTTTACTACGAAGTCTACTTTTCTCAAATTAA
Homology
[Close]
BLAST of CSPI04G07720 vs. Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 5.2e-13
Identity = 100/446 (22.42%), Postives = 191/446 (42.83%), Query Frame = 1 

Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           ++ +FRPISL+    K+++K+LA R+++ + +II+  Q+ F+ G Q    I  +  V+  
Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592

Query: 63  WSS-KGRKGVLLKLDLEKAYDKVDGSFLDMAMK-----------LKRLWPR--------- 122
            +  K +  +++ LD EKA+DK+   F+   ++           +K ++ +         
Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 652

Query: 123 ---GKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEK-------LSD 182
                I  K G RQG PL+P+LF +V   L  L     +++ +KG    K       L+D
Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIV---LEVLARAIRQQKEIKGIQIGKEEVKISLLAD 712

Query: 183 DLTHLQYVDD------------TSFFFLGGWKLGD------LVEGDQYLSS--RSRLPF- 242
           D+  + Y+ D             SF  + G+K+        L   ++      R   PF 
Sbjct: 713 DM--IVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAFLYTKNKQAEKEIRETTPFS 772

Query: 243 ------KYLGFSIGGGRNRKEMWN----TLEERFRYKIDRWRNVSLSKGDRLTLVQSEGL 302
                 KYLG ++   +  K++++    +L++  +  + RW+++  S   R+ +V+   +
Sbjct: 773 IVTNNIKYLGVTL--TKEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKM-AI 832

Query: 303 LIQLPTSSNGIVIPLICYGGLGIGLFRQKNTALLTKWLWRSEQGKILQIMGRILKHKET- 362
           L +     N I I +          F  +    + K++W +++ +I +    +LK K T 
Sbjct: 833 LPKAIYRFNAIPIKIPTQ-------FFNELEGAICKFVWNNKKPRIAK---SLLKDKRTS 892

[Close]
BLAST of CSPI04G07720 vs. Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.4e-12
Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 1 

Query: 4   VSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQW 63
           + ++RP+SL+++ YK+++K ++ RLK VL  +I+  Q   V GR I D + +  +++   
Sbjct: 522 IKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFA 581

Query: 64  SSKGRKGVLLKLDLEKAYDKVDGSFLDMAMK-----------LKRLWPRGKILAK----- 123
              G     L LD EKA+D+VD  +L   ++           LK ++   + L K     
Sbjct: 582 RRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSL 641

Query: 124 -------RGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYVD 162
                  RG+RQG PL+  L+++  +   CL+     ++ L G   ++    +    Y D
Sbjct: 642 TAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLL-----RKRLTGLVLKEPDMRVVLSAYAD 697

[Close]
BLAST of CSPI04G07720 vs. Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.2e-10
Identity = 50/185 (27.03%), Postives = 88/185 (47.57%), Query Frame = 1 

Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           R  ++RPISL+    K+++K+L  R+++ +  II+  Q+ F+ G Q    I  +  V+  
Sbjct: 525 RKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQH 584

Query: 63  WSS-KGRKGVLLKLDLEKAYDKVDGSFLDMAMKLKRLWPRGKILA--------------- 122
            +  K +  ++L +D EKA+D +   F  M   LK++   G  L                
Sbjct: 585 INKLKNKDHMILSIDAEKAFDNIQHPF--MIRTLKKIGIEGTFLKLIEAIYSKPTANIIL 644

Query: 123 ----------KRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHL 162
                     + G RQG PL+P LF +V + L+  I    E++++KG H    S+++   
Sbjct: 645 NGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAI---REEKAIKGIHIG--SEEIKLS 702

[Close]
BLAST of CSPI04G07720 vs. Swiss-Prot
Match: LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-09
Identity = 48/167 (28.74%), Postives = 82/167 (49.10%), Query Frame = 1 

Query: 6   DFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQWS- 65
           +FRPISL+    K+++K+LA R+++ +  +I+  Q+ F+ G Q    I  +  V+   + 
Sbjct: 529 NFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINR 588

Query: 66  SKGRKGVLLKLDLEKAYDKVDGSFL----------DMAMKLKRL---WPRGKIL------ 125
           +K +  V++ +D EKA+DK+   F+           M +K+ R     P   I+      
Sbjct: 589 AKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKL 648

Query: 126 ----AKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEK 149
                K G RQG PL+P LF +V   L  L     +++ +KG    K
Sbjct: 649 EAFPLKTGTRQGCPLSPLLFNIV---LEVLARAIRQEKEIKGIQLGK 692

[Close]
BLAST of CSPI04G07720 vs. Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-07
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 1 

Query: 100 PRGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 159
           P+G +   RG+RQGDPL+P+LF +  + LS L     E+  L G      S  + HL + 
Sbjct: 18  PQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFA 77

Query: 160 DDTS 164
           DDTS
Sbjct: 78  DDTS 81

[Close]
BLAST of CSPI04G07720 vs. TrEMBL
Match: A5B034_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007640 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.0e-55
Identity = 165/498 (33.13%), Postives = 242/498 (48.59%), Query Frame = 1 

Query: 3    RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
            ++S+FRPISL+TSLYK+I+KVL+ RL+ VL   I+ +Q AFV+GRQI+DA+LIA+E+VD+
Sbjct: 1215 KISNFRPISLITSLYKIIAKVLSGRLRGVLHETIHSTQGAFVQGRQIMDAVLIANEIVDE 1274

Query: 63   WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLW----------------- 122
                G +GV+ K+D EKAYD +   FLD  ++ K      R W                 
Sbjct: 1275 RRQSGEEGVVFKIDFEKAYDHIRWDFLDQVLEKKGFSPKWRKWMNGCLSSVSYAVLVNGS 1334

Query: 123  PRGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
             +G + A RG+RQGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 1335 AKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLVRAEERNMLEGFRVGRNRTRVSHLQFA 1394

Query: 183  DDTSFF-------------------FLGGWKLGDLVEGDQY-----LSSRSRL------- 242
            DDT FF                    + G K+ +L + + Y      +  SRL       
Sbjct: 1395 DDTIFFSNTREEDLQTLKSLLLAFGHISGLKV-NLDKSNIYGINLDXAHISRLAETLGCK 1454

Query: 243  ----PFKYLGFSIGGGRNRKEMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQS------- 302
                P  YLG  +GG       W+ + ER   ++D W+   LS   R+TL+QS       
Sbjct: 1455 ASGXPILYLGLPLGGNPRAGGFWDPVIERISRRLDGWQKAYLSFXGRITLIQSCLTHMPC 1514

Query: 303  -EGLLIQLPTSSNGIVIPL----------------------IC----YGGLGIGLFRQKN 362
                L +LP S    +  L                      +C     GGLG G    +N
Sbjct: 1515 YYLSLFKLPASVAAKIERLQRDFLWSGIGEXKKDHLVRWDVVCKPKEIGGLGFGNISLRN 1574

Query: 363  TALLTKWLWR-SEQGK------ILQIMG---------RILK--HKETFK--------FSA 379
             ALL KWLWR   +G       IL I G          I++  H+  +K        FS+
Sbjct: 1575 LALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTIVRWSHRCPWKAISQVFQEFSS 1634

[Close]
BLAST of CSPI04G07720 vs. TrEMBL
Match: A5ADL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017151 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 165/478 (34.52%), Postives = 239/478 (50.00%), Query Frame = 1 

Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           ++SDFRPISL+TSLYK+I+KVL+ RL+ VL   I+ +Q AFV+GRQI+DA+LIA+E+VD+
Sbjct: 306 KISDFRPISLITSLYKIIAKVLSGRLRGVLHETIHSTQGAFVQGRQIMDAVLIANEIVDE 365

Query: 63  WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLW----------------- 122
               G +GV+ K+D EKAYD V   FLD  ++ K      R W                 
Sbjct: 366 RRRSGEEGVVFKIDFEKAYDHVRWDFLDQVLEKKGFSPKWRKWMNGCLSSVSYAVLVNGS 425

Query: 123 PRGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
            +G + A RG+RQGDPL+PFLFT+V D LS ++    E+  L+G  F+   +DL  L+ +
Sbjct: 426 AKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLLRAEERNMLEG--FQGGEEDLQTLKSL 485

Query: 183 DDTSFFFLGGWKLG---DLVEG---DQYLSSR---------SRLPFKYLGFSIGGGRNRK 242
              +F  + G K+      + G   DQ   SR         S  P  YLG  +GG     
Sbjct: 486 -LLAFGHISGLKVNLDKSNIYGINLDQAHISRLAETLECKASGWPILYLGLPLGGNPRAG 545

Query: 243 EMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQS--------EGLLIQLPTSSNGIVIPL- 302
             W+ + ER   ++D W+   LS G R+TL+QS           L +LP S    +  L 
Sbjct: 546 GFWDPMIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYYLSLFKLPASVAAKIERLQ 605

Query: 303 ---------------------IC----YGGLGIGLFRQKNTALLTKWLWR-SEQGK---- 362
                                +C     GGLG G    +N ALL KWLWR   +G     
Sbjct: 606 RDFLWSGIGEGKNDHLVRWDVVCKPKEIGGLGFGNISLRNLALLGKWLWRYPREGSALWH 665

Query: 363 --ILQIMG---------RILK--HKETFK--------FSAFV---LRKGTKIRFWKDNWC 379
             IL I G          I++  H+  +K        FS+F    +  G KIRFW+D W 
Sbjct: 666 QVILSIYGSHSNGWDANTIVRWSHRCPWKAISQVFQVFSSFTQFVVGNGEKIRFWEDLWW 725

[Close]
BLAST of CSPI04G07720 vs. TrEMBL
Match: A2Q185_MEDTR (Non-LTR retroelement reverse transcriptase-like, related OS=Medicago truncatula GN=MtrDRAFT_AC148340g36v2 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.2e-50
Identity = 147/408 (36.03%), Postives = 212/408 (51.96%), Query Frame = 1 

Query: 4   VSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQW 63
           + DFRPISL++SLYK++SKVLA RL  V+ SII+ SQ+AFV+GR +LD +++ +EVVD W
Sbjct: 3   LKDFRPISLLSSLYKLLSKVLAKRLVGVMNSIISSSQLAFVKGRNLLDGVVVINEVVD-W 62

Query: 64  SSKGRKGV-LLKLDLEKAYDK----VDGSFLDMAMK-LKRLWPRGKILAKRGIRQGDPLA 123
           + K  + V +LK+D EKAYD     +     + +M  L    P  +I   RG++QGDPLA
Sbjct: 63  ARKSNQEVTILKVDFEKAYDSWIAWMKACVCEGSMSVLVNGSPTEEINIHRGLKQGDPLA 122

Query: 124 PFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYVDDTSFFFLGGWKLGDLVE 183
           PFLF +V + LS L+         +GF F      L+HLQ  DDT    LG  K  D ++
Sbjct: 123 PFLFLLVAEGLSGLMRNVARLNLFEGFRFHTDGLSLSHLQLADDT--ICLG--KATDFMD 182

Query: 184 -GDQYLS-SRSRLPFKYLGFSIGGGRNRKEMWNTLEERFRYKIDRWRNVSLSKGDRLTLV 243
               +LS +   LPFKYLG  +G   +    W +L E  + +++ W N  +S G R+ L+
Sbjct: 183 MACNFLSCNEGNLPFKYLGLPMGANPSCVSTWESLLEHGKSRLNSWGNKYISFGGRIVLL 242

Query: 244 QSEGLLIQLPTSS-----NGIVIPLICY----GGLGIGLFRQKNTALLTKWLWR---SEQ 303
            S    I +   S       +    +C     GGL +G  R  N +LL KW WR    + 
Sbjct: 243 NSVINAIPIFYLSFLKMPGKVKWRTVCQPKEKGGLDVGDIRVVNVSLLAKWRWRLLNEDH 302

Query: 304 GKILQIMGRILKHKETFKFSAFVLRK---GTKIRFWKDNWCGVEPLAEKFPNLFSLSLNK 363
               +++           F+  V+R+   G   +FW   W G  PL +KFP LF++S  K
Sbjct: 303 ALWKEVLVEKYGSGGVGWFNEEVVRRVMNGEDTKFWYGRWRGELPLRDKFPRLFAMSNQK 362

Query: 364 DAYVAECWCI--VTHSWNLSLRRNMLNNEIVNVASILEIL--HSWAPQ 385
           +A VAE W    V   W  S RR     E   + ++L +L  H W  +
Sbjct: 363 EATVAEIWVSNGVEREWRFSWRRRFFVWEEELLNNLLAVLEGHVWVDE 405

[Close]
BLAST of CSPI04G07720 vs. TrEMBL
Match: A5AGC6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006444 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.4e-50
Identity = 142/409 (34.72%), Postives = 205/409 (50.12%), Query Frame = 1 

Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           R+SDF+PISL+TSLYK+I+KVLA R++ VL   I+ +Q AFV+GRQILDA+LIA+E+VD 
Sbjct: 304 RISDFKPISLITSLYKIIAKVLAGRIRGVLHETIHSTQGAFVQGRQILDAVLIANEIVDD 363

Query: 63  WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLWPR--------------- 122
               G +GV+ K+D EKAYD V   FLD  +++K      R W R               
Sbjct: 364 KRKSGEEGVVFKIDFEKAYDHVSWDFLDHVLEMKGFGLRWRKWMRGCLSSVSFAVLVNGN 423

Query: 123 --GKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
             G + A RG+ QGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 424 AKGWVKASRGLGQGDPLSPFLFTIVADVLSRMLLKAKERNVLEGFRVGRNRSRVSHLQFA 483

Query: 183 DDTSFFFLGGWKLGDLVEGDQYLSSRSRLPFKYLG--------FSIGGGRNRKEMWNTLE 242
           DDT FF           E D        L F ++          +I G        + L 
Sbjct: 484 DDTIFF-------SSSREEDMMTLKNVLLVFGHISGLKVNLDKSNIYGINLEHNPLSRLA 543

Query: 243 ERFRYKIDRWRNVSLSKGDRLTLVQSEGLLIQLPTSSNGIVI--PLIC----YGGLGIGL 302
           E    K   W  + L+K +R+   Q + L   +       ++   ++C     GGLG G 
Sbjct: 544 EMLDCKASGWPILYLAKIERM---QRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGK 603

Query: 303 FRQKNTALLTKWLWR-SEQGK------ILQIMG---------RILK-------------H 346
              +N A L KWLWR   +G       IL I G          I++             +
Sbjct: 604 ISIRNVARLGKWLWRYPREGSALWHQVILSIYGSHSNGWDVNNIVRWSHRCPWKAIALVY 663

[Close]
BLAST of CSPI04G07720 vs. TrEMBL
Match: A5AVV7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026017 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.4e-50
Identity = 143/439 (32.57%), Postives = 214/439 (48.75%), Query Frame = 1 

Query: 4   VSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQW 63
           + DFRPISL+  LYK+++KVLA RLK+V+  +++ +Q AFV GRQILDA LIA+EV+D W
Sbjct: 142 LGDFRPISLLGGLYKLLAKVLANRLKRVIGKVVSSAQNAFVMGRQILDASLIANEVIDSW 201

Query: 64  SSKGRKGVLLKLDLEKAYDKVDGSFLDMAMK--------LKRLW---------------P 123
             +  KG++ KLD+EKAYD ++ +FL   ++        +  +W               P
Sbjct: 202 QKRKEKGLICKLDIEKAYDSINWNFLMKVLQKMGFGNKWVGWMWSCVSSAKFSILVNGVP 261

Query: 124 RGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYVD 183
            G   + RG+RQGDPL+P+LF M  + L  LI    E   L G +         +L   +
Sbjct: 262 AGFFPSTRGLRQGDPLSPYLFVMGMEILDVLIRRAVEGGYLSGCNIRGAXGLRMNLAKSE 321

Query: 184 DTSFFFLGGWKLGDLVEGDQYLSSR-SRLPFKYLGFSIGGGRNRKEMWNTLEERFRYKID 243
                 +   ++ +++E    L  R   LP  YLG  +G       MW+ +EER R ++ 
Sbjct: 322 -----IIPVGEVEEILELAAELGCRVGSLPSHYLGLPLGVPNRAXSMWDGVEERVRRRLA 381

Query: 244 RWRNVSLSKGDRLTLVQSEGLLIQLPTSSNGIVIPLICYGGLGIGLFRQKNTALLTKWLW 303
            W+   +SKG R+TL+++      L    NG         GLG+      N ALL KW W
Sbjct: 382 LWKRQXISKGGRITLIKNX-----LAKKRNG---------GLGLRRIATLNRALLGKWTW 441

Query: 304 RSE----------------------QGKILQIMGRILKHKETFKFS-------AFVLRKG 363
           R                        + K +     +   KE  K S       AF++ KG
Sbjct: 442 RFACERDNLWKQVISTKYGQEDYGWRAKKVSGAAGVGVXKEIMKESEWCXENLAFLVGKG 501

Query: 364 TKIRFWKDNWCGVEPLAEKFPNLFSLSLNKDAYVAECWCIVTHS----WNLSLRRNMLNN 386
           +KI+FWKD+WC   PL++ F +LF L++++DA + E W    HS     NL   R+  + 
Sbjct: 502 SKIKFWKDSWCTDTPLSQCFNHLFVLAVHRDASIEEMW--DHHSGQGDXNLVFVRDFNDW 559

[Close]
BLAST of CSPI04G07720 vs. TAIR10
Match: ATMG01250.1 (ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase))

HSP 1 Score: 58.9 bits (141), Expect = 8.3e-09
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 1 

Query: 100 PRGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 159
           P+G +   RG+RQGDPL+P+LF +  + LS L     E+  L G      S  + HL + 
Sbjct: 18  PQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFA 77

Query: 160 DDTS 164
           DDTS
Sbjct: 78  DDTS 81

[Close]
BLAST of CSPI04G07720 vs. TAIR10
Match: AT4G20520.1 (AT4G20520.1 RNA binding;RNA-directed DNA polymerases)

HSP 1 Score: 49.7 bits (117), Expect = 5.0e-06
Identity = 28/69 (40.58%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 24 LATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQWS-SKGRKG-VLLKLDLEKAY 83
          +  RLK ++ ++I  +Q +F+ GR   D I+   E V      KG KG +LLKLDLEKAY
Sbjct: 1  MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60

Query: 84 DKVDGSFLD 91
          D++   +L+
Sbjct: 61 DRIRWDYLE 69

[Close]
BLAST of CSPI04G07720 vs. NCBI nr
Match: gi|147772272|emb|CAN73982.1| (hypothetical protein VITISV_007640 [Vitis vinifera])

HSP 1 Score: 223.4 bits (568), Expect = 7.2e-55
Identity = 165/498 (33.13%), Postives = 242/498 (48.59%), Query Frame = 1 

Query: 3    RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
            ++S+FRPISL+TSLYK+I+KVL+ RL+ VL   I+ +Q AFV+GRQI+DA+LIA+E+VD+
Sbjct: 1215 KISNFRPISLITSLYKIIAKVLSGRLRGVLHETIHSTQGAFVQGRQIMDAVLIANEIVDE 1274

Query: 63   WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLW----------------- 122
                G +GV+ K+D EKAYD +   FLD  ++ K      R W                 
Sbjct: 1275 RRQSGEEGVVFKIDFEKAYDHIRWDFLDQVLEKKGFSPKWRKWMNGCLSSVSYAVLVNGS 1334

Query: 123  PRGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
             +G + A RG+RQGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 1335 AKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLVRAEERNMLEGFRVGRNRTRVSHLQFA 1394

Query: 183  DDTSFF-------------------FLGGWKLGDLVEGDQY-----LSSRSRL------- 242
            DDT FF                    + G K+ +L + + Y      +  SRL       
Sbjct: 1395 DDTIFFSNTREEDLQTLKSLLLAFGHISGLKV-NLDKSNIYGINLDXAHISRLAETLGCK 1454

Query: 243  ----PFKYLGFSIGGGRNRKEMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQS------- 302
                P  YLG  +GG       W+ + ER   ++D W+   LS   R+TL+QS       
Sbjct: 1455 ASGXPILYLGLPLGGNPRAGGFWDPVIERISRRLDGWQKAYLSFXGRITLIQSCLTHMPC 1514

Query: 303  -EGLLIQLPTSSNGIVIPL----------------------IC----YGGLGIGLFRQKN 362
                L +LP S    +  L                      +C     GGLG G    +N
Sbjct: 1515 YYLSLFKLPASVAAKIERLQRDFLWSGIGEXKKDHLVRWDVVCKPKEIGGLGFGNISLRN 1574

Query: 363  TALLTKWLWR-SEQGK------ILQIMG---------RILK--HKETFK--------FSA 379
             ALL KWLWR   +G       IL I G          I++  H+  +K        FS+
Sbjct: 1575 LALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTIVRWSHRCPWKAISQVFQEFSS 1634

[Close]
BLAST of CSPI04G07720 vs. NCBI nr
Match: gi|147867182|emb|CAN79956.1| (hypothetical protein VITISV_017151 [Vitis vinifera])

HSP 1 Score: 218.8 bits (556), Expect = 1.8e-53
Identity = 165/478 (34.52%), Postives = 239/478 (50.00%), Query Frame = 1 

Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           ++SDFRPISL+TSLYK+I+KVL+ RL+ VL   I+ +Q AFV+GRQI+DA+LIA+E+VD+
Sbjct: 306 KISDFRPISLITSLYKIIAKVLSGRLRGVLHETIHSTQGAFVQGRQIMDAVLIANEIVDE 365

Query: 63  WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLW----------------- 122
               G +GV+ K+D EKAYD V   FLD  ++ K      R W                 
Sbjct: 366 RRRSGEEGVVFKIDFEKAYDHVRWDFLDQVLEKKGFSPKWRKWMNGCLSSVSYAVLVNGS 425

Query: 123 PRGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
            +G + A RG+RQGDPL+PFLFT+V D LS ++    E+  L+G  F+   +DL  L+ +
Sbjct: 426 AKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLLRAEERNMLEG--FQGGEEDLQTLKSL 485

Query: 183 DDTSFFFLGGWKLG---DLVEG---DQYLSSR---------SRLPFKYLGFSIGGGRNRK 242
              +F  + G K+      + G   DQ   SR         S  P  YLG  +GG     
Sbjct: 486 -LLAFGHISGLKVNLDKSNIYGINLDQAHISRLAETLECKASGWPILYLGLPLGGNPRAG 545

Query: 243 EMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQS--------EGLLIQLPTSSNGIVIPL- 302
             W+ + ER   ++D W+   LS G R+TL+QS           L +LP S    +  L 
Sbjct: 546 GFWDPMIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYYLSLFKLPASVAAKIERLQ 605

Query: 303 ---------------------IC----YGGLGIGLFRQKNTALLTKWLWR-SEQGK---- 362
                                +C     GGLG G    +N ALL KWLWR   +G     
Sbjct: 606 RDFLWSGIGEGKNDHLVRWDVVCKPKEIGGLGFGNISLRNLALLGKWLWRYPREGSALWH 665

Query: 363 --ILQIMG---------RILK--HKETFK--------FSAFV---LRKGTKIRFWKDNWC 379
             IL I G          I++  H+  +K        FS+F    +  G KIRFW+D W 
Sbjct: 666 QVILSIYGSHSNGWDANTIVRWSHRCPWKAISQVFQVFSSFTQFVVGNGEKIRFWEDLWW 725

[Close]
BLAST of CSPI04G07720 vs. NCBI nr
Match: gi|124359183|gb|ABN05701.1| (non-LTR retroelement reverse transcriptase-like, related [Medicago truncatula])

HSP 1 Score: 208.0 bits (528), Expect = 3.1e-50
Identity = 147/408 (36.03%), Postives = 212/408 (51.96%), Query Frame = 1 

Query: 4   VSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQW 63
           + DFRPISL++SLYK++SKVLA RL  V+ SII+ SQ+AFV+GR +LD +++ +EVVD W
Sbjct: 3   LKDFRPISLLSSLYKLLSKVLAKRLVGVMNSIISSSQLAFVKGRNLLDGVVVINEVVD-W 62

Query: 64  SSKGRKGV-LLKLDLEKAYDK----VDGSFLDMAMK-LKRLWPRGKILAKRGIRQGDPLA 123
           + K  + V +LK+D EKAYD     +     + +M  L    P  +I   RG++QGDPLA
Sbjct: 63  ARKSNQEVTILKVDFEKAYDSWIAWMKACVCEGSMSVLVNGSPTEEINIHRGLKQGDPLA 122

Query: 124 PFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYVDDTSFFFLGGWKLGDLVE 183
           PFLF +V + LS L+         +GF F      L+HLQ  DDT    LG  K  D ++
Sbjct: 123 PFLFLLVAEGLSGLMRNVARLNLFEGFRFHTDGLSLSHLQLADDT--ICLG--KATDFMD 182

Query: 184 -GDQYLS-SRSRLPFKYLGFSIGGGRNRKEMWNTLEERFRYKIDRWRNVSLSKGDRLTLV 243
               +LS +   LPFKYLG  +G   +    W +L E  + +++ W N  +S G R+ L+
Sbjct: 183 MACNFLSCNEGNLPFKYLGLPMGANPSCVSTWESLLEHGKSRLNSWGNKYISFGGRIVLL 242

Query: 244 QSEGLLIQLPTSS-----NGIVIPLICY----GGLGIGLFRQKNTALLTKWLWR---SEQ 303
            S    I +   S       +    +C     GGL +G  R  N +LL KW WR    + 
Sbjct: 243 NSVINAIPIFYLSFLKMPGKVKWRTVCQPKEKGGLDVGDIRVVNVSLLAKWRWRLLNEDH 302

Query: 304 GKILQIMGRILKHKETFKFSAFVLRK---GTKIRFWKDNWCGVEPLAEKFPNLFSLSLNK 363
               +++           F+  V+R+   G   +FW   W G  PL +KFP LF++S  K
Sbjct: 303 ALWKEVLVEKYGSGGVGWFNEEVVRRVMNGEDTKFWYGRWRGELPLRDKFPRLFAMSNQK 362

Query: 364 DAYVAECWCI--VTHSWNLSLRRNMLNNEIVNVASILEIL--HSWAPQ 385
           +A VAE W    V   W  S RR     E   + ++L +L  H W  +
Sbjct: 363 EATVAEIWVSNGVEREWRFSWRRRFFVWEEELLNNLLAVLEGHVWVDE 405

[Close]
BLAST of CSPI04G07720 vs. NCBI nr
Match: gi|147767141|emb|CAN73385.1| (hypothetical protein VITISV_006444 [Vitis vinifera])

HSP 1 Score: 206.5 bits (524), Expect = 9.1e-50
Identity = 142/409 (34.72%), Postives = 205/409 (50.12%), Query Frame = 1 

Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           R+SDF+PISL+TSLYK+I+KVLA R++ VL   I+ +Q AFV+GRQILDA+LIA+E+VD 
Sbjct: 304 RISDFKPISLITSLYKIIAKVLAGRIRGVLHETIHSTQGAFVQGRQILDAVLIANEIVDD 363

Query: 63  WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLWPR--------------- 122
               G +GV+ K+D EKAYD V   FLD  +++K      R W R               
Sbjct: 364 KRKSGEEGVVFKIDFEKAYDHVSWDFLDHVLEMKGFGLRWRKWMRGCLSSVSFAVLVNGN 423

Query: 123 --GKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
             G + A RG+ QGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 424 AKGWVKASRGLGQGDPLSPFLFTIVADVLSRMLLKAKERNVLEGFRVGRNRSRVSHLQFA 483

Query: 183 DDTSFFFLGGWKLGDLVEGDQYLSSRSRLPFKYLG--------FSIGGGRNRKEMWNTLE 242
           DDT FF           E D        L F ++          +I G        + L 
Sbjct: 484 DDTIFF-------SSSREEDMMTLKNVLLVFGHISGLKVNLDKSNIYGINLEHNPLSRLA 543

Query: 243 ERFRYKIDRWRNVSLSKGDRLTLVQSEGLLIQLPTSSNGIVI--PLIC----YGGLGIGL 302
           E    K   W  + L+K +R+   Q + L   +       ++   ++C     GGLG G 
Sbjct: 544 EMLDCKASGWPILYLAKIERM---QRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGK 603

Query: 303 FRQKNTALLTKWLWR-SEQGK------ILQIMG---------RILK-------------H 346
              +N A L KWLWR   +G       IL I G          I++             +
Sbjct: 604 ISIRNVARLGKWLWRYPREGSALWHQVILSIYGSHSNGWDVNNIVRWSHRCPWKAIALVY 663

[Close]
BLAST of CSPI04G07720 vs. NCBI nr
Match: gi|147778672|emb|CAN76107.1| (hypothetical protein VITISV_026017 [Vitis vinifera])

HSP 1 Score: 206.5 bits (524), Expect = 9.1e-50
Identity = 143/439 (32.57%), Postives = 214/439 (48.75%), Query Frame = 1 

Query: 4   VSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQW 63
           + DFRPISL+  LYK+++KVLA RLK+V+  +++ +Q AFV GRQILDA LIA+EV+D W
Sbjct: 142 LGDFRPISLLGGLYKLLAKVLANRLKRVIGKVVSSAQNAFVMGRQILDASLIANEVIDSW 201

Query: 64  SSKGRKGVLLKLDLEKAYDKVDGSFLDMAMK--------LKRLW---------------P 123
             +  KG++ KLD+EKAYD ++ +FL   ++        +  +W               P
Sbjct: 202 QKRKEKGLICKLDIEKAYDSINWNFLMKVLQKMGFGNKWVGWMWSCVSSAKFSILVNGVP 261

Query: 124 RGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYVD 183
            G   + RG+RQGDPL+P+LF M  + L  LI    E   L G +         +L   +
Sbjct: 262 AGFFPSTRGLRQGDPLSPYLFVMGMEILDVLIRRAVEGGYLSGCNIRGAXGLRMNLAKSE 321

Query: 184 DTSFFFLGGWKLGDLVEGDQYLSSR-SRLPFKYLGFSIGGGRNRKEMWNTLEERFRYKID 243
                 +   ++ +++E    L  R   LP  YLG  +G       MW+ +EER R ++ 
Sbjct: 322 -----IIPVGEVEEILELAAELGCRVGSLPSHYLGLPLGVPNRAXSMWDGVEERVRRRLA 381

Query: 244 RWRNVSLSKGDRLTLVQSEGLLIQLPTSSNGIVIPLICYGGLGIGLFRQKNTALLTKWLW 303
            W+   +SKG R+TL+++      L    NG         GLG+      N ALL KW W
Sbjct: 382 LWKRQXISKGGRITLIKNX-----LAKKRNG---------GLGLRRIATLNRALLGKWTW 441

Query: 304 RSE----------------------QGKILQIMGRILKHKETFKFS-------AFVLRKG 363
           R                        + K +     +   KE  K S       AF++ KG
Sbjct: 442 RFACERDNLWKQVISTKYGQEDYGWRAKKVSGAAGVGVXKEIMKESEWCXENLAFLVGKG 501

Query: 364 TKIRFWKDNWCGVEPLAEKFPNLFSLSLNKDAYVAECWCIVTHS----WNLSLRRNMLNN 386
           +KI+FWKD+WC   PL++ F +LF L++++DA + E W    HS     NL   R+  + 
Sbjct: 502 SKIKFWKDSWCTDTPLSQCFNHLFVLAVHRDASIEEMW--DHHSGQGDXNLVFVRDFNDW 559

The following BLAST results are available for this feature:
BLAST of CSPI04G07720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LORF2_MOUSE5.2e-1322.42LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2[more]
YTX2_XENLA3.4e-1227.07Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1[more]
LIN1_NYCCO3.2e-1027.03LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1[more]
LORF2_HUMAN2.1e-0928.74LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1[more]
M1250_ARATH1.5e-0740.63Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg0... [more]
BLAST of CSPI04G07720 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B034_VITVI5.0e-5533.13Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007640 PE=4 SV=1[more]
A5ADL9_VITVI1.2e-5334.52Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017151 PE=4 SV=1[more]
A2Q185_MEDTR2.2e-5036.03Non-LTR retroelement reverse transcriptase-like, related OS=Medicago truncatula ... [more]
A5AGC6_VITVI6.4e-5034.72Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006444 PE=4 SV=1[more]
A5AVV7_VITVI6.4e-5032.57Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026017 PE=4 SV=1[more]
BLAST of CSPI04G07720 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG01250.18.3e-0940.63ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)[more]
AT4G20520.15.0e-0640.58 RNA binding;RNA-directed DNA polymerases[more]
BLAST of CSPI04G07720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147772272|emb|CAN73982.1|7.2e-5533.13hypothetical protein VITISV_007640 [Vitis vinifera][more]
gi|147867182|emb|CAN79956.1|1.8e-5334.52hypothetical protein VITISV_017151 [Vitis vinifera][more]
gi|124359183|gb|ABN05701.1|3.1e-5036.03non-LTR retroelement reverse transcriptase-like, related [Medicago truncatula][more]
gi|147767141|emb|CAN73385.1|9.1e-5034.72hypothetical protein VITISV_006444 [Vitis vinifera][more]
gi|147778672|emb|CAN76107.1|9.1e-5032.57hypothetical protein VITISV_026017 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G07720.1CSPI04G07720.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 5..166
score: 2.8
IPR000477Reverse transcriptase domainPROFILEPS50878RT_POLcoord: 1..226
score: 11
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 2..230
score: 2.9
NoneNo IPR availablePANTHERPTHR19446:SF340REVERSE TRANSCRIPTASE-RELATEDcoord: 2..230
score: 2.9
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 7..166
score: 8.4

Synteny