CSPI04G05480 (gene) Wild cucumber (PI 183967)

NameCSPI04G05480
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionLate embryogenesis abundant
LocationChr4 : 3726760 .. 3727896 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTTCCTTTATAACAAATATATGGGTTATTGTCAAACACATATTCAATGAGTTTTGTAATTGCTAATCTCCTAAATAACCGTAATGCATATAAATTTGCAAAAAGAAAAGACTGAATGAGGAATGGGTAAACCTGATTTGGTGGAAATCGGACTACCAAGAACTAAAATTACCAAACTTGGAGAAAAGTGGATACGTGTCCTATTCAACGCAACCCTCGAAGATACGACTGAGGTAAATAACCGCCACGTTTGATACAAAACAAGCCACGTAACCGTCTCCCCTCGCCGGCTTCTCTCCCAAAAACCTCCCAACCCCACATTCAAATACCTAAACTTATAAACTCATAATTTCACTGCCCCAATCTCCATTCCCATTTCTTTTTTAATTTTTATATATAGTTTGTATTTTAGTTGGATCGGAGAAAAAAGAAGGAAGAAAATTAGAAATAATGGGGAGGAAAACAATGACGTTGTTGGTGGCGGTGGCGGTGGTATGGCTGGTGTTGGTGGCGGATAAATGCAGTGGGTTTGAAGAAGCAGTACAAGATATGAAGGACAATGTGAAGCAAATGGCGGAAGATGCAAAGCTTGATGAAAAAGCCGAAGCTGTCAAATCTAAGGCTTCTGAAGTATACACCGATGCTAAGGACAAGGCTTCCTCCTGGTCCAACTGGGCTTACGACAAGATTTCCGCGTAACACCTCTTTTTCTTTCTCTTTCTCTTTCTAATCTAATTACATTCTAATAGAACTAAATGAATTTAGTAATATTAGTTATCTCTGCCTCAAAATGATCCACCCAAACATCCTTTTTTAGATTATATTACATTACAAAATCAGAAAAATTAAGATCATTAGTTTTGTTGGCTTTGAATATGAATGGGTTAAATTTGAAACAGGGGATTGGGATTGAGCGAAGAATCGAAGGAGAAAGAGACAGCTCCTAACGCAGCAGATAAAAATTAACACAGCTGCTTCAGGTAAATTACGCATTATTGTTTTATCATTATCTCTAAATCAAAATGTTTGAAAAATTATATATAATATTTGAAAAATAATTCTACTTATTTTGGAAGAAATTGGGTTGGTAATATACATTTTTTAATGGCCAGAATTGTTTTGCCTGTTATAGTC

mRNA sequence

ATGGGGAGGAAAACAATGACGTTGTTGGTGGCGGTGGCGGTGGTATGGCTGGTGTTGGTGGCGGATAAATGCAGTGGGTTTGAAGAAGCAGTACAAGATATGAAGGACAATGTGAAGCAAATGGCGGAAGATGCAAAGCTTGATGAAAAAGCCGAAGCTGTCAAATCTAAGGCTTCTGAAGTATACACCGATGCTAAGGACAAGGCTTCCTCCTGGTCCAACTGGGCTTACGACAAGATTTCCGCGGGATTGGGATTGAGCGAAGAATCGAAGGAGAAAGAGACAGCTCCTAACGCAGCAGATAAAAATTAA

Coding sequence (CDS)

ATGGGGAGGAAAACAATGACGTTGTTGGTGGCGGTGGCGGTGGTATGGCTGGTGTTGGTGGCGGATAAATGCAGTGGGTTTGAAGAAGCAGTACAAGATATGAAGGACAATGTGAAGCAAATGGCGGAAGATGCAAAGCTTGATGAAAAAGCCGAAGCTGTCAAATCTAAGGCTTCTGAAGTATACACCGATGCTAAGGACAAGGCTTCCTCCTGGTCCAACTGGGCTTACGACAAGATTTCCGCGGGATTGGGATTGAGCGAAGAATCGAAGGAGAAAGAGACAGCTCCTAACGCAGCAGATAAAAATTAA
BLAST of CSPI04G05480 vs. TrEMBL
Match: A0A0A0KY19_CUCSA (Late embryogenesis abundant OS=Cucumis sativus GN=Csa_4G046700 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-46
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60
           MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE
Sbjct: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60

Query: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN 104
           VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN
Sbjct: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN 103

BLAST of CSPI04G05480 vs. TrEMBL
Match: A0A0A0KUJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046680 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 1

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGF-EEAVQDMKDNVKQMAEDAKLDEKAEAVKSKAS 60
           MGRKT TL+VAV  VWLVLVA+KCSGF EEAV+D+K+N+ ++AE A LDEKAEAVKSKAS
Sbjct: 1   MGRKTRTLVVAV--VWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKAS 60

Query: 61  EVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           EVYT+AKDK  SWSNWAY+KIS GLGL+EE + KETA N ADK
Sbjct: 61  EVYTEAKDKTESWSNWAYNKISRGLGLNEE-EIKETAHNVADK 100

BLAST of CSPI04G05480 vs. TrEMBL
Match: B9S6F3_RICCO (Late embryogenesis abundant, putative OS=Ricinus communis GN=RCOM_0536090 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.1e-06
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1

Query: 8  LLVAVAVVWLVLVADKC-------SGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 67
          +++AV V+W  + AD C       S  E+ +++ K+ V  MA  AK  EKAE +K  A+E
Sbjct: 7  VVMAVVVLWAAVYADVCWCFSSSSSNTEDTMENAKETVNLMAGSAK--EKAEDMKQGATE 66

Query: 68 VYTDAKDKASSWSNWAYDKISAGLGLSEESKE 93
             D K+ A SW++WAY K S G+GL   ++E
Sbjct: 67 AMQDGKEAAESWTDWAYGKFSEGIGLKGNARE 96

BLAST of CSPI04G05480 vs. NCBI nr
Match: gi|449457538|ref|XP_004146505.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-46
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60
           MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE
Sbjct: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60

Query: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN 104
           VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN
Sbjct: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN 103

BLAST of CSPI04G05480 vs. NCBI nr
Match: gi|659102352|ref|XP_008452083.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 4.1e-31
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 1

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60
           MGRKT TL+V  AVVWLVLVA+KCSG+ EAV+D+KDNV ++AEDAKLDEKAEAVKS ASE
Sbjct: 1   MGRKTATLVV--AVVWLVLVAEKCSGYGEAVRDVKDNVSEIAEDAKLDEKAEAVKSTASE 60

Query: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           VY+DAKDKA SWSNWAYDKIS GLGLSE+ + KETA N ADK
Sbjct: 61  VYSDAKDKAESWSNWAYDKISKGLGLSEK-ELKETAHNVADK 99

BLAST of CSPI04G05480 vs. NCBI nr
Match: gi|449457638|ref|XP_004146555.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.5e-28
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 1

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGF-EEAVQDMKDNVKQMAEDAKLDEKAEAVKSKAS 60
           MGRKT TL+VAV  VWLVLVA+KCSGF EEAV+D+K+N+ ++AE A LDEKAEAVKSKAS
Sbjct: 1   MGRKTRTLVVAV--VWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKAS 60

Query: 61  EVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           EVYT+AKDK  SWSNWAY+KIS GLGL+EE + KETA N ADK
Sbjct: 61  EVYTEAKDKTESWSNWAYNKISRGLGLNEE-EIKETAHNVADK 100

BLAST of CSPI04G05480 vs. NCBI nr
Match: gi|659102350|ref|XP_008452082.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 6.8e-26
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 1

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGF-EEAVQDMKDNVKQMAEDAKLDEKAEAVKSKAS 60
           MGRK MTL+VAV  V LVLVA+KC G  E+AVQD+KD++ + A+DAKLDEKAEAVKS AS
Sbjct: 1   MGRKMMTLVVAV--VLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTAS 60

Query: 61  EVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           EVY+DAKDKA SWSNWAYDKIS GLGLSEE + KE A + ADK
Sbjct: 61  EVYSDAKDKAESWSNWAYDKISKGLGLSEE-ESKEKAHDGADK 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KY19_CUCSA1.4e-46100.00Late embryogenesis abundant OS=Cucumis sativus GN=Csa_4G046700 PE=4 SV=1[more]
A0A0A0KUJ5_CUCSA1.7e-2874.76Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046680 PE=4 SV=1[more]
B9S6F3_RICCO7.1e-0639.13Late embryogenesis abundant, putative OS=Ricinus communis GN=RCOM_0536090 PE=4 S... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449457538|ref|XP_004146505.1|2.0e-46100.00PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus][more]
gi|659102352|ref|XP_008452083.1|4.1e-3178.43PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo][more]
gi|449457638|ref|XP_004146555.1|2.5e-2874.76PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus][more]
gi|659102350|ref|XP_008452082.1|6.8e-2672.82PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G05480.1CSPI04G05480.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G05480Watermelon (97103) v2cpiwmbB275
CSPI04G05480Watermelon (97103) v2cpiwmbB318
CSPI04G05480Watermelon (97103) v2cpiwmbB332
CSPI04G05480Wax gourdcpiwgoB369
CSPI04G05480Wax gourdcpiwgoB378
CSPI04G05480Wax gourdcpiwgoB428
CSPI04G05480Wild cucumber (PI 183967)cpicpiB109
CSPI04G05480Wild cucumber (PI 183967)cpicpiB163
CSPI04G05480Cucumber (Gy14) v1cgycpiB130
CSPI04G05480Cucumber (Gy14) v1cgycpiB505
CSPI04G05480Cucurbita maxima (Rimu)cmacpiB342
CSPI04G05480Cucurbita maxima (Rimu)cmacpiB675
CSPI04G05480Cucurbita maxima (Rimu)cmacpiB721
CSPI04G05480Cucurbita moschata (Rifu)cmocpiB332
CSPI04G05480Cucurbita moschata (Rifu)cmocpiB666
CSPI04G05480Cucurbita moschata (Rifu)cmocpiB715
CSPI04G05480Cucumber (Chinese Long) v2cpicuB182
CSPI04G05480Cucumber (Chinese Long) v2cpicuB201
CSPI04G05480Melon (DHL92) v3.5.1cpimeB310
CSPI04G05480Melon (DHL92) v3.5.1cpimeB338
CSPI04G05480Watermelon (Charleston Gray)cpiwcgB300
CSPI04G05480Watermelon (Charleston Gray)cpiwcgB342
CSPI04G05480Watermelon (97103) v1cpiwmB313
CSPI04G05480Watermelon (97103) v1cpiwmB335
CSPI04G05480Cucurbita pepo (Zucchini)cpecpiB114
CSPI04G05480Cucurbita pepo (Zucchini)cpecpiB223
CSPI04G05480Cucurbita pepo (Zucchini)cpecpiB397
CSPI04G05480Bottle gourd (USVL1VR-Ls)cpilsiB252
CSPI04G05480Bottle gourd (USVL1VR-Ls)cpilsiB303
CSPI04G05480Melon (DHL92) v3.6.1cpimedB301
CSPI04G05480Melon (DHL92) v3.6.1cpimedB328
CSPI04G05480Cucumber (Gy14) v2cgybcpiB168
CSPI04G05480Cucumber (Gy14) v2cgybcpiB279
CSPI04G05480Silver-seed gourdcarcpiB0444
CSPI04G05480Silver-seed gourdcarcpiB0981
CSPI04G05480Silver-seed gourdcarcpiB1057
CSPI04G05480Cucumber (Chinese Long) v3cpicucB211
CSPI04G05480Cucumber (Chinese Long) v3cpicucB213
CSPI04G05480Cucumber (Chinese Long) v3cpicucB242