CSPI04G03920 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G03920
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 2460968 .. 2461775 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAGCTAAGAAAGTTACAAACCTTATTTCTTCTTATATATAAGCCGTTGAAATCAAGCTTGGTGCTCTACACAGCTATGGCTTCCAATAATGTTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCATCTTTGCCTCCAATAATGTTGCCACAAGAAACTTGCTCTCTATGCCTCATCTCGCTAGTAAGTTACTCTCTTGTATCACATTTAATGTTGATGTGATATCTTTTGAGCGGGATTGAGATTATATTTTAAGAGTACTTAAAAGTCATTCTAAATATATAGTACAAGAAATTTTGAAAAAGTGCATTTTATGTATATAGAATCTAGTATCATTCTAAATCTATATGCATTTTATGTATATAGAATTCAAGAAATTTAAAAAGGTGATAACTATTTTAATTTTCTGTTTTTGAAATAATTTTTTAAACTTTTCTTAATAATTTTCTAATCTTAATTAAATTTCATAAGAAAAAAACTATCAGTATATAAATTAATTTTCAAATTGTTATACGGTTTTTGAAAGTTTGTTTTAATTTGTTTTTAGAATTTGGGTTAAGATGTAAAATTGTACTCTTTTTACTCGAGGTTTTATACAAATTATAATAAAAAATGAAAGAAAATTAAAAAACGAAATGGTTATCAAACAAGATCAAAATAATTGCAAAACGCAGCGTAAAGAAATTGTTGTTGATTTTGTACAGATGTGAAGCGTGATGAGATTAACAATCCTCCACAAACAGCAGATGATGAACCATGGGATGGAAACATTCGAGTATAACACCGACTTTCTTTCTTTTC

mRNA sequence

ATGGCTTCCAATAATGTTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCATCTTTGCCTCCAATAATGTTGCCACAAGAAACTTGCTCTCTATGCCTCATCTCGCTAATGTGAAGCGTGATGAGATTAACAATCCTCCACAAACAGCAGATGATGAACCATGGGATGGAAACATTCGAGTATAA

Coding sequence (CDS)

ATGGCTTCCAATAATGTTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCATCTTTGCCTCCAATAATGTTGCCACAAGAAACTTGCTCTCTATGCCTCATCTCGCTAATGTGAAGCGTGATGAGATTAACAATCCTCCACAAACAGCAGATGATGAACCATGGGATGGAAACATTCGAGTATAA
Homology
[Close]
BLAST of CSPI04G03920 vs. TrEMBL
Match: A0A0A0KZ52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022280 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.4e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI 60
          MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI
Sbjct: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI 60

Query: 61 RV 63
          RV
Sbjct: 61 RV 62

[Close]
BLAST of CSPI04G03920 vs. NCBI nr
Match: gi|700197983|gb|KGN53141.1| (hypothetical protein Csa_4G022280 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI 60
          MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI
Sbjct: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI 60

Query: 61 RV 63
          RV
Sbjct: 61 RV 62

The following BLAST results are available for this feature:
BLAST of CSPI04G03920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G03920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ52_CUCSA8.4e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022280 PE=4 SV=1[more]
BLAST of CSPI04G03920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G03920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197983|gb|KGN53141.1|1.2e-25100.00hypothetical protein Csa_4G022280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G03920.1CSPI04G03920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G03920Csa4G022280Cucumber (Chinese Long) v2cpicuB182
CSPI04G03920MELO3C032835.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G03920CsaV3_4G003970Cucumber (Chinese Long) v3cpicucB213
CSPI04G03920CsGy4G003810Cucumber (Gy14) v2cgybcpiB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G03920Cucurbita maxima (Rimu)cmacpiB337
CSPI04G03920Cucurbita maxima (Rimu)cmacpiB716
CSPI04G03920Cucurbita moschata (Rifu)cmocpiB328
CSPI04G03920Cucurbita moschata (Rifu)cmocpiB708
CSPI04G03920Melon (DHL92) v3.5.1cpimeB310
CSPI04G03920Watermelon (Charleston Gray)cpiwcgB336
CSPI04G03920Watermelon (97103) v1cpiwmB315
CSPI04G03920Cucurbita pepo (Zucchini)cpecpiB398
CSPI04G03920Bottle gourd (USVL1VR-Ls)cpilsiB303
CSPI04G03920Watermelon (97103) v2cpiwmbB326
CSPI04G03920Wax gourdcpiwgoB370
CSPI04G03920Cucumber (Gy14) v1cgycpiB103