CSPI04G03920 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G03920
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 2460968 .. 2461775 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAGCTAAGAAAGTTACAAACCTTATTTCTTCTTATATATAAGCCGTTGAAATCAAGCTTGGTGCTCTACACAGCTATGGCTTCCAATAATGTTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCATCTTTGCCTCCAATAATGTTGCCACAAGAAACTTGCTCTCTATGCCTCATCTCGCTAGTAAGTTACTCTCTTGTATCACATTTAATGTTGATGTGATATCTTTTGAGCGGGATTGAGATTATATTTTAAGAGTACTTAAAAGTCATTCTAAATATATAGTACAAGAAATTTTGAAAAAGTGCATTTTATGTATATAGAATCTAGTATCATTCTAAATCTATATGCATTTTATGTATATAGAATTCAAGAAATTTAAAAAGGTGATAACTATTTTAATTTTCTGTTTTTGAAATAATTTTTTAAACTTTTCTTAATAATTTTCTAATCTTAATTAAATTTCATAAGAAAAAAACTATCAGTATATAAATTAATTTTCAAATTGTTATACGGTTTTTGAAAGTTTGTTTTAATTTGTTTTTAGAATTTGGGTTAAGATGTAAAATTGTACTCTTTTTACTCGAGGTTTTATACAAATTATAATAAAAAATGAAAGAAAATTAAAAAACGAAATGGTTATCAAACAAGATCAAAATAATTGCAAAACGCAGCGTAAAGAAATTGTTGTTGATTTTGTACAGATGTGAAGCGTGATGAGATTAACAATCCTCCACAAACAGCAGATGATGAACCATGGGATGGAAACATTCGAGTATAACACCGACTTTCTTTCTTTTC

mRNA sequence

ATGGCTTCCAATAATGTTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCATCTTTGCCTCCAATAATGTTGCCACAAGAAACTTGCTCTCTATGCCTCATCTCGCTAATGTGAAGCGTGATGAGATTAACAATCCTCCACAAACAGCAGATGATGAACCATGGGATGGAAACATTCGAGTATAA

Coding sequence (CDS)

ATGGCTTCCAATAATGTTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCATCTTTGCCTCCAATAATGTTGCCACAAGAAACTTGCTCTCTATGCCTCATCTCGCTAATGTGAAGCGTGATGAGATTAACAATCCTCCACAAACAGCAGATGATGAACCATGGGATGGAAACATTCGAGTATAA
Homology
[Close]
BLAST of CSPI04G03920 vs. TrEMBL
Match: A0A0A0KZ52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022280 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.4e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI 60
          MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI
Sbjct: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI 60

Query: 61 RV 63
          RV
Sbjct: 61 RV 62

[Close]
BLAST of CSPI04G03920 vs. NCBI nr
Match: gi|700197983|gb|KGN53141.1| (hypothetical protein Csa_4G022280 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI 60
          MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI
Sbjct: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINNPPQTADDEPWDGNI 60

Query: 61 RV 63
          RV
Sbjct: 61 RV 62

The following BLAST results are available for this feature:
BLAST of CSPI04G03920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G03920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ52_CUCSA8.4e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022280 PE=4 SV=1[more]
BLAST of CSPI04G03920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G03920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197983|gb|KGN53141.1|1.2e-25100.00hypothetical protein Csa_4G022280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G03920.1CSPI04G03920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G03920Csa4G022280Cucumber (Chinese Long) v2cpicuB182
CSPI04G03920MELO3C032835.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G03920CsaV3_4G003970Cucumber (Chinese Long) v3cpicucB213
CSPI04G03920CsGy4G003810Cucumber (Gy14) v2cgybcpiB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G03920Cucumber (Gy14) v1cgycpiB103
CSPI04G03920Cucurbita maxima (Rimu)cmacpiB337
CSPI04G03920Cucurbita maxima (Rimu)cmacpiB716
CSPI04G03920Cucurbita moschata (Rifu)cmocpiB328
CSPI04G03920Cucurbita moschata (Rifu)cmocpiB708
CSPI04G03920Melon (DHL92) v3.5.1cpimeB310
CSPI04G03920Watermelon (Charleston Gray)cpiwcgB336
CSPI04G03920Watermelon (97103) v1cpiwmB315
CSPI04G03920Cucurbita pepo (Zucchini)cpecpiB398
CSPI04G03920Bottle gourd (USVL1VR-Ls)cpilsiB303
CSPI04G03920Watermelon (97103) v2cpiwmbB326
CSPI04G03920Wax gourdcpiwgoB370