CSPI04G02700 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G02700
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Pentatricopeptide repeat-containing protein
Location	Chr4 : 1643322 .. 1645782 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAAGTAGAAAGTTAGAATTCATAGATGTGTGAGAAAGTATCGTAACATGATTGAAAAAAGAGTCATCTATACAAAAAAGCTTCCAAGGGATACGAAAATTCTATTATTAAATGGCTTGCTTTTTAAGTGATAAACCAAAACTGAGATAAACCAAAAAAGCTTCGAAGGCTCTTCTATTGCTATCCCGACAAACTGAGATATACCGAAGTCGCAACGCCGAGAGCGTACACTGCAACCACAGTTCCAACCACATCCTTTCCGGACCGAGTCACGGCGCCGATTCCGGCGATTCCGGCGATTCCCACCGGAACTCGAACCATCACTTTCTTTCCCACGTTCTTCACCACAGCCTCTGCGAATAGTTCAATCGCCCAACGCTTAAACAGGATCAGTCCTAGTGCTTCGTCTTCACGATCCGAGTCATCGCGATTGACGGCTCGTAGTGCTGAGTCCACCTGGAGACGAGTCGGGGGAGAGGGAAGCCAGTTGGTGATTAGTGGATGCGGCTGGACGACGGTGAGGAGGTGGTGAAGGTGGTCGGCGGCGGTGCAGAGTTGATAGGGGAAAACGCCGTTGTATGCGTGCTGTGTTAGGGCAAGGCAGTGGGAGAAGGTTGAATTGCAGGCTGAGTCAAATTCATGCGAGTTGGTAAGTGAGTTTCTGACTCGTTTCGAAGCTGATATTCCCATTATCTTTCTTCCTCGCTCTCGCTCTCTCCTTCCCTCCACCAATTCTGGTTTTGAAGGACACTTTAATAAATATCTGAAGACAAAAGCCTTTTATATCAAGTGTAGTTTTCATATAGATTAGAAAAATATCTTTAAACCTTTCCAATAAGCTTCTCAAAAATTTTAAGAATACCCATACCATTAGATTTCTGCTACATCTCATCTTCACTGAACTGAGTTTCTCGCAAAAGGGCGGTTGGAGATGAAATCTACTCTAGTGGGTCCTCTTCAACTCCATTTTCTTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCGTTGTGGTACGGCAGCTCCACCACCAAATATCATTTGTGGCCTCAGAAAGGGCTCGAACAGGCCCTTAGGGTTGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCTACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCGGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGTCTGAATTACAAAGGCAAAATGAACTGGAATTATCGCTTCAGGTATTGCTTACTCCTGTTTAACGTCTGGGAATATTGCAAAAGCTAGATATTATATGCCTTGAACTCTCTTATGGCTGGCTTAGTTATAATAATTGCATAAATTGAAAGTTCAACTCAATACCAATGGTCGTTAGAGTTCAGGTTTTATAAGGTTCAATTACAACAATGAGTAAAAGGTTGATGGTGCTGTATTTTTGCATTTTCTTTCGCTGTCATTTATTTTTGCATAGTTTAAATTTTCTTTTTGCATTGCTATTGAGTTAAAATTTCAAGTTTCATTTTATGCAATTATTATAACAATGAGTGCTTGATGGTGTTATTGTAGCTGTATTTTTGCATTTTATTTCGTTATCAAAAGGAAACACATTTTGTATACCATACGAATCGGTTCCTTTGTACTCTTGGATTTCTTCAGATACTTTAATTATCAATGAAATTGAAATTGTCTTGTATATATAAAAAAAAAATCATTTATTTTGTTTTGGCTTTTTCCTTTACAAGAAATACAATCATTTGAAATTCTGATCATAAAAGTTCACTGGAATGATACATCTGGATTCTCTTCTGCAGCCTTTAGCATTCCTTCCATTTCAAATTTTATTTCATCTTAACTGAATTCAGGCTTTAGGTCTTCAAATTTATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGGAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAAACATGCAGTTGGGTTACTTCTGGGAATGTATTTGATTTATTATCTGATCAATGTCTTTGGGATTCTCATAATCCTTGAATACTTTGTAACAGCTAGTAATGAATGAAGGTAAACTCTAGTCCTAGAGGTTCTCTCATTAACTAATAACTATGATGCGAGTGGC

mRNA sequence

ATGAAATCTACTCTAGTGGGTCCTCTTCAACTCCATTTTCTTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCGTTGTGGTACGGCAGCTCCACCACCAAATATCATTTGTGGCCTCAGAAAGGGCTCGAACAGGCCCTTAGGGTTGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCTACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCGGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGTCTGAATTACAAAGGCAAAATGAACTGGAATTATCGCTTCAGGTCTTCAAATTTATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGGAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAA

Coding sequence (CDS)

ATGAAATCTACTCTAGTGGGTCCTCTTCAACTCCATTTTCTTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCGTTGTGGTACGGCAGCTCCACCACCAAATATCATTTGTGGCCTCAGAAAGGGCTCGAACAGGCCCTTAGGGTTGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCTACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCGGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGTCTGAATTACAAAGGCAAAATGAACTGGAATTATCGCTTCAGGTCTTCAAATTTATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGGAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAA

Homology

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BLAST of CSPI04G02700 vs. Swiss-Prot
Match: PP266_ARATH (Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-19
Identity = 60/210 (28.57%), Postives = 113/210 (53.81%), Query Frame = 1


Query: 34  PPPNIICGLRKGSNRPLGL----SRVPSNEAIQAVQSLK-LAKSTSKMEDVINTKLGRLL 93
           P P  +   R    RP G      ++   EA+  +  LK L +   K++  I T + RLL
Sbjct: 47  PKPFTVFVSRFHDGRPRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLL 106

Query: 94  KADLFDALSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVF 153
           K D+   + EL+RQ E  L++++F+ +Q +EW++PD+ +Y  +I+ + K+K ++ A  ++
Sbjct: 107 KLDMLAVIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALW 166

Query: 154 HKLRKDGLEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNL--- 213
            K++K+ L PD++ + E++  +L+      A+  Y  M+ S   P+EL F++L+K L   
Sbjct: 167 EKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPH 226

Query: 214 ----EKFREEFAVVVKEDCNEYLDNPQKFF 232
                K +++F  +  E      D P++ F
Sbjct: 227 PLLRNKVKKDFEELFPE--KHAYDPPEEIF 254

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BLAST of CSPI04G02700 vs. Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-16
Identity = 53/191 (27.75%), Postives = 104/191 (54.45%), Query Frame = 1


Query: 57  SNEAIQAVQSLKLAKSTS-KMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFM 116
           S E + A + LK  ++ S +++  I + + RLLK+DL   L+E QRQN++ L +++++ +
Sbjct: 2   SKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVV 61

Query: 117 QNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDM 176
           + E W+ PD+  Y  M+M++ +NK ++  ++V+  L+K+ +  D   F +++  +L  ++
Sbjct: 62  RREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNEL 121

Query: 177 IERAVETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKEDCNEYL------DNPQK 236
              A+  Y  M  S   P  L F++++K L  +  E    VK+D  E        D P+ 
Sbjct: 122 PLEAMRLYGEMRESPDRPLSLPFRVILKGLVPY-PELREKVKDDFLELFPGMIVYDPPED 181

Query: 237 FFNDNGQKLTT 241
              D+ ++  T
Sbjct: 182 ICEDSDEEART 191

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BLAST of CSPI04G02700 vs. Swiss-Prot
Match: PP279_ARATH (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-09
Identity = 29/112 (25.89%), Postives = 60/112 (53.57%), Query Frame = 1


Query: 92  LFDALSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKL 151
           + +AL E  ++N  + +L++F  ++ + W+EP  + Y  +  ++G  K  + A  +F  +
Sbjct: 61  VLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVM 120

Query: 152 RKDGLEPDTRAFNEMMGAYLQVDMIERAVETYRLM-IASGCTPDELTFKILI 203
             +GL+P    +  ++  Y + +++++A  T   M   S C PD  TF +LI
Sbjct: 121 LSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172

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BLAST of CSPI04G02700 vs. Swiss-Prot
Match: PPR76_ARATH (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-08
Identity = 29/112 (25.89%), Postives = 64/112 (57.14%), Query Frame = 1


Query: 96  LSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDG 155
           ++   R  E++ ++ +F+ ++  +  +PD+  Y+ +I  +GKN  ++ A   F ++++ G
Sbjct: 484 IASFGRVGEVDEAINIFEELERSDC-KPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKG 543

Query: 156 LEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNLEK 208
           L PD   ++ +M  + + + +E A   +  M+  GC P+ +T+ IL+  LEK
Sbjct: 544 LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEK 594

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BLAST of CSPI04G02700 vs. Swiss-Prot
Match: PP186_ARATH (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-08
Identity = 26/81 (32.10%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 122 EPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAVE 181
           +P++  Y  ++    +  + E AEE+F +L++DGLEPD   +N +M +Y +      A E
Sbjct: 296 KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAE 355

Query: 182 TYRLMIASGCTPDELTFKILI 203
            + LM   GC PD  ++ I++
Sbjct: 356 IFSLMQHMGCEPDRASYNIMV 376

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BLAST of CSPI04G02700 vs. TrEMBL
Match: A0A0A0KU23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011020 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 9.5e-134
Identity = 244/245 (99.59%), Postives = 245/245 (100.00%), Query Frame = 1


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA
Sbjct: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV
Sbjct: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKEDCNEYLDNPQKFFNDNGQKLTT 240
           ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVK+DCNEYLDNPQKFFNDNGQKLTT
Sbjct: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240

Query: 241 KVRIL 246
           KVRIL
Sbjct: 241 KVRIL 245

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BLAST of CSPI04G02700 vs. TrEMBL
Match: M5XFP6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010483mg PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 6.5e-66
Identity = 139/240 (57.92%), Postives = 179/240 (74.58%), Query Frame = 1


Query: 9   LQLHFLQLGLRQNLTNRSLRCGTAAP-----PPNIICGLRKGSNRPLGLSRVPSNEAIQA 68
           ++ H  QLG ++N     LR   A P     P +I+CGLR G  +PL  SRV S EAIQA
Sbjct: 4   IKFHIPQLGFKKNYPEPHLRYRLALPSSSSTPSHIVCGLRGGPRKPLWRSRVLSTEAIQA 63

Query: 69  VQSLKLAKST-SKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEWFE 128
           VQSLKL+KS  SK+E V+  +L RLLKADL DAL+ELQRQNE+EL+L+VFKF++ E W++
Sbjct: 64  VQSLKLSKSNPSKLEQVMGGRLSRLLKADLLDALAELQRQNEVELALKVFKFVREEVWYK 123

Query: 129 PDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAVET 188
           PDL LY  MI+L+GKNK+IEMAEE+F  L+++GLE DTRAF EM+GAY+QV M E+A+ET
Sbjct: 124 PDLSLYCSMILLLGKNKLIEMAEELFSGLKEEGLEYDTRAFTEMIGAYIQVGMTEKAMET 183

Query: 189 YRLMIASGCTPDELTFKILIKNLEKF-REEFAVVVKEDCNEYLDNPQKFFNDNGQKLTTK 242
           Y LM ASGC PD+LTF ILI+NLEK   EE A  +K+ C EY+D+P+KFF +  +K  T+
Sbjct: 184 YELMKASGCAPDKLTFTILIRNLEKVGEEELAAHIKKYCAEYVDSPEKFFEEVERKHRTR 243

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BLAST of CSPI04G02700 vs. TrEMBL
Match: A0A0D2PRX0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G125600 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.3e-61
Identity = 130/239 (54.39%), Postives = 173/239 (72.38%), Query Frame = 1


Query: 1   MKSTLVGPLQL-HFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNE 60
           MK +L+G L++ H  Q+G  +   +   +         I CGLR G+ +PL  SRV S E
Sbjct: 1   MKPSLMGSLRISHLPQMGFLKYPHHNHKQSSI------ITCGLRGGTKKPLWKSRVLSTE 60

Query: 61  AIQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEE 120
           AIQAV SLKLA S SK+  V++T+L RLLKADL D L+ELQRQNE  L+L+VF+F++ E 
Sbjct: 61  AIQAVHSLKLANSNSKLHHVLSTRLSRLLKADLLDTLAELQRQNEFHLALKVFEFVRKEV 120

Query: 121 WFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA 180
           W++PD+ LY  MI L+GKNKM EMAE++F +L KDGL+PDTRAF E++GAYLQV M+E+A
Sbjct: 121 WYKPDMCLYCNMIQLLGKNKMTEMAEQLFTELEKDGLKPDTRAFTELIGAYLQVGMMEKA 180

Query: 181 VETYRLMIASGCTPDELTFKILIKNLEKF-REEFAVVVKEDCNEYLDNPQKFFNDNGQK 238
           +ETY  + A GC+PD+LTF ILI+NLE   +EE A VVK+DC EYL+ P++F  D  +K
Sbjct: 181 METYERLKACGCSPDKLTFTILIRNLENVGKEELAAVVKKDCIEYLEFPERFLEDVRKK 233

[Close]

BLAST of CSPI04G02700 vs. TrEMBL
Match: A0A067L9J9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20923 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.3e-61
Identity = 130/239 (54.39%), Postives = 170/239 (71.13%), Query Frame = 1


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTL+G L+  F  L L +       +         I C LR G  +PL  ++  S EA
Sbjct: 1   MKSTLIGSLKFQFPPLKLCEIPQKIHFQSSI------ITCSLRGGRRKPLWRAKRLSTEA 60

Query: 61  IQAVQSLKLAKSTS-KMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEE 120
           IQA+QSLKLAKS++ ++E+V   K+ RLLKADL D L  LQ QNEL+L+++VF+F++ E 
Sbjct: 61  IQAIQSLKLAKSSNLRLEEVFKDKVSRLLKADLLDTLEVLQNQNELDLAIKVFEFVRKEI 120

Query: 121 WFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA 180
           W++PDL LYH MI ++GKNK+IE+AEE F KL K+GL+PDTRAF EM+GAYLQVDMIE+A
Sbjct: 121 WYKPDLSLYHSMIQMLGKNKLIEIAEEFFSKLEKEGLKPDTRAFTEMIGAYLQVDMIEKA 180

Query: 181 VETYRLMIASGCTPDELTFKILIKNL-EKFREEFAVVVKEDCNEYLDNPQKFFNDNGQK 238
           +ETY  M ASGC PD+LTF ILI+NL E  REE A  +K++C+EY+D P KF  +  QK
Sbjct: 181 METYNRMKASGCDPDKLTFAILIRNLDEAGREELAATIKKECSEYMDYPDKFLEELEQK 233

[Close]

BLAST of CSPI04G02700 vs. TrEMBL
Match: A0A061EK44_THECC (Vacuolar sorting protein 9 domain, putative isoform 1 OS=Theobroma cacao GN=TCM_019942 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 5.3e-60
Identity = 131/241 (54.36%), Postives = 168/241 (69.71%), Query Frame = 1


Query: 1   MKSTLVGPLQLHFLQL---GLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPS 60
           MK +L+G L L F  +   G  QN  N   +      P  + CGLR G+ + L  SRV S
Sbjct: 1   MKPSLMGTLNLKFSLIPLTGFLQNPQNHKRQ-----HPSTVTCGLRGGTRKHLWRSRVLS 60

Query: 61  NEAIQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQN 120
            EAIQAV SLKLA S SK++ V + KL RLLKADL D L+ELQRQNE  L+L+VF+F++ 
Sbjct: 61  AEAIQAVHSLKLANSNSKLQHVFSNKLSRLLKADLLDTLAELQRQNEFHLALEVFEFVRK 120

Query: 121 EEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIE 180
           E W++PDL LY  MI L+GKN+M EMAE VF +L K+GL+PDTRAF EM+GAYL V M +
Sbjct: 121 EVWYKPDLSLYCDMIQLLGKNRMTEMAERVFTELDKEGLKPDTRAFTEMIGAYLIVGMTD 180

Query: 181 RAVETYRLMIASGCTPDELTFKILIKNLEKF-REEFAVVVKEDCNEYLDNPQKFFNDNGQ 238
           +A+ETY ++ ASGC PD+LTF ILI+NLE   RE+ A V+K+DC EYL+ P++F     Q
Sbjct: 181 KAMETYEMLKASGCCPDKLTFTILIRNLENAGREDLAAVLKKDCTEYLEYPERFLEQVQQ 236

[Close]

BLAST of CSPI04G02700 vs. TAIR10
Match: AT5G09320.1 (AT5G09320.1 Vacuolar sorting protein 9 (VPS9) domain)

HSP 1 Score: 102.8 bits (255), Expect = 3.0e-22
Identity = 65/210 (30.95%), Postives = 112/210 (53.33%), Query Frame = 1


Query: 43  RKGSNRPLGLSRVPSNEAIQAVQSLKLAK----------------STSKMEDVINTKLGR 102
           R  + +PL   R+ S EAIQAVQ+LK A                 S++ ++ VI +K  R
Sbjct: 492 RSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRR 551

Query: 103 LLKADLFDALSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEE 162
           LLK D+   L EL RQNE  L+L+VF+ ++ E W++P +R+Y  MI +M  N ++E    
Sbjct: 552 LLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNY 611

Query: 163 VFHKLRKD-GLEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNL 222
           ++  ++ + GL  +   FN ++   L   + +  ++ Y  M + G  PD  +F++L+  L
Sbjct: 612 LYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGL 671

Query: 223 EKFRE-EFAVVVKEDCNEYLDNPQKFFNDN 235
           E   E   + +V++D +EY     +F  ++
Sbjct: 672 ESNGEMGLSAIVRQDAHEYYGESLEFIEED 701

[Close]

BLAST of CSPI04G02700 vs. TAIR10
Match: AT3G46870.1 (AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 97.8 bits (242), Expect = 9.7e-21
Identity = 60/210 (28.57%), Postives = 113/210 (53.81%), Query Frame = 1


Query: 34  PPPNIICGLRKGSNRPLGL----SRVPSNEAIQAVQSLK-LAKSTSKMEDVINTKLGRLL 93
           P P  +   R    RP G      ++   EA+  +  LK L +   K++  I T + RLL
Sbjct: 47  PKPFTVFVSRFHDGRPRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLL 106

Query: 94  KADLFDALSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVF 153
           K D+   + EL+RQ E  L++++F+ +Q +EW++PD+ +Y  +I+ + K+K ++ A  ++
Sbjct: 107 KLDMLAVIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALW 166

Query: 154 HKLRKDGLEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNL--- 213
            K++K+ L PD++ + E++  +L+      A+  Y  M+ S   P+EL F++L+K L   
Sbjct: 167 EKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPH 226

Query: 214 ----EKFREEFAVVVKEDCNEYLDNPQKFF 232
                K +++F  +  E      D P++ F
Sbjct: 227 PLLRNKVKKDFEELFPE--KHAYDPPEEIF 254

[Close]

BLAST of CSPI04G02700 vs. TAIR10
Match: AT1G62350.1 (AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-18
Identity = 53/191 (27.75%), Postives = 104/191 (54.45%), Query Frame = 1


Query: 57  SNEAIQAVQSLKLAKSTS-KMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFM 116
           S E + A + LK  ++ S +++  I + + RLLK+DL   L+E QRQN++ L +++++ +
Sbjct: 2   SKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVV 61

Query: 117 QNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDM 176
           + E W+ PD+  Y  M+M++ +NK ++  ++V+  L+K+ +  D   F +++  +L  ++
Sbjct: 62  RREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNEL 121

Query: 177 IERAVETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKEDCNEYL------DNPQK 236
              A+  Y  M  S   P  L F++++K L  +  E    VK+D  E        D P+ 
Sbjct: 122 PLEAMRLYGEMRESPDRPLSLPFRVILKGLVPY-PELREKVKDDFLELFPGMIVYDPPED 181

Query: 237 FFNDNGQKLTT 241
              D+ ++  T
Sbjct: 182 ICEDSDEEART 191

[Close]

BLAST of CSPI04G02700 vs. TAIR10
Match: AT3G27750.1 (AT3G27750.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10
Identity = 55/180 (30.56%), Postives = 86/180 (47.78%), Query Frame = 1


Query: 37  NIICGLRKGSNRPLGLSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDAL 96
           +I CG R     PL   R+ S EAIQ++QSLK A  T     +    L RL+K+DL   L
Sbjct: 30  SIRCGPRDNRG-PLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTLRPLRRLIKSDLISVL 89

Query: 97  SELQRQNELELSLQVFKFMQNEEWFEP-DLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDG 156
            EL RQ+   L++ V   ++ E  + P DL LY  ++  + +NK  +  + +  ++    
Sbjct: 90  RELLRQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGID 149

Query: 157 LEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASG-----CTPDELTFKILIKNLEKFRE 211
              D +A  +++ A +  +  E  V  Y LM  SG        DE   ++L K L +  E
Sbjct: 150 QRSDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]

BLAST of CSPI04G02700 vs. TAIR10
Match: AT3G53170.1 (AT3G53170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-10
Identity = 29/112 (25.89%), Postives = 60/112 (53.57%), Query Frame = 1


Query: 92  LFDALSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKL 151
           + +AL E  ++N  + +L++F  ++ + W+EP  + Y  +  ++G  K  + A  +F  +
Sbjct: 111 VLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVM 170

Query: 152 RKDGLEPDTRAFNEMMGAYLQVDMIERAVETYRLM-IASGCTPDELTFKILI 203
             +GL+P    +  ++  Y + +++++A  T   M   S C PD  TF +LI
Sbjct: 171 LSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 222

[Close]

BLAST of CSPI04G02700 vs. NCBI nr
Match: gi|449469204|ref|XP_004152311.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis sativus])

HSP 1 Score: 484.2 bits (1245), Expect = 1.4e-133
Identity = 244/245 (99.59%), Postives = 245/245 (100.00%), Query Frame = 1


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA
Sbjct: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV
Sbjct: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKEDCNEYLDNPQKFFNDNGQKLTT 240
           ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVK+DCNEYLDNPQKFFNDNGQKLTT
Sbjct: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240

Query: 241 KVRIL 246
           KVRIL
Sbjct: 241 KVRIL 245

[Close]

BLAST of CSPI04G02700 vs. NCBI nr
Match: gi|659108216|ref|XP_008454079.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis melo])

HSP 1 Score: 436.4 bits (1121), Expect = 3.3e-119
Identity = 218/241 (90.46%), Postives = 229/241 (95.02%), Query Frame = 1


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTL+G LQLHF +LGLRQNLTNRSL C TAAPPPNIICGLRKG  +PLG SRVPSNEA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKL RLLKADLFDAL+ELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           +EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKEDCNEYLDNPQKFFNDNGQKLTT 240
           +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+VVK+DC EYLDNPQKFFND GQKLTT
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240

Query: 241 K 242
           K
Sbjct: 241 K 241

[Close]

BLAST of CSPI04G02700 vs. NCBI nr
Match: gi|645231541|ref|XP_008222444.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Prunus mume])

HSP 1 Score: 269.2 bits (687), Expect = 6.9e-69
Identity = 144/244 (59.02%), Postives = 183/244 (75.00%), Query Frame = 1


Query: 5   LVGPLQLHFLQLGLRQNLTNRSLRCGTAAP-----PPNIICGLRKGSNRPLGLSRVPSNE 64
           L+G ++ H  QLG +QN     LR   A P     P +I+CGLR G  +PL  SRV S E
Sbjct: 4   LMGSIKFHIPQLGFKQNYPEPHLRYRLALPSSSSTPSHIVCGLRGGPRKPLWRSRVLSTE 63

Query: 65  AIQAVQSLKLAKST-SKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNE 124
           AIQAVQSLKL+KS  SK+E V+  +L RLLKADL DAL+ELQRQNE+EL+L+VFKF++ E
Sbjct: 64  AIQAVQSLKLSKSNPSKLEQVMGGRLSRLLKADLLDALAELQRQNEVELALKVFKFVREE 123

Query: 125 EWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIER 184
            W++PDL LY  MI+L+GKNK+IEMAEE+F  L+++GLE DTRAF EM+GAY+QV M E+
Sbjct: 124 VWYKPDLSLYCSMILLLGKNKLIEMAEELFSGLKEEGLEYDTRAFTEMIGAYIQVGMTEK 183

Query: 185 AVETYRLMIASGCTPDELTFKILIKNLEKF-REEFAVVVKEDCNEYLDNPQKFFNDNGQK 242
           A+ETY LM ASGC PD+LTF ILI+NLEK   EE A  VK+DC EY+D+P+KFF +  +K
Sbjct: 184 AMETYELMKASGCVPDKLTFTILIRNLEKVGEEELAAHVKKDCAEYVDSPEKFFEEVARK 243

[Close]

BLAST of CSPI04G02700 vs. NCBI nr
Match: gi|1009112576|ref|XP_015869106.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Ziziphus jujuba])

HSP 1 Score: 260.4 bits (664), Expect = 3.2e-66
Identity = 139/242 (57.44%), Postives = 180/242 (74.38%), Query Frame = 1


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAA---PPPNIICGLRKGSNRPLGLSRVPS 60
           M ST +G  +L F ++G  Q L    L    A      P + CGLRKG+ +PL  SRV S
Sbjct: 1   MDSTSLGSPRLQFREVGFWQKLPKFQLHSSVAPNSFSAPKVKCGLRKGTRKPLWRSRVLS 60

Query: 61  NEAIQAVQSLKLAKST-SKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQ 120
           NEAIQAVQSLKLAKS  SK+E+V N ++ RLLKADL DAL+EL+RQNEL+L+LQVFKFMQ
Sbjct: 61  NEAIQAVQSLKLAKSNPSKLEEVFNGRVARLLKADLLDALAELRRQNELDLALQVFKFMQ 120

Query: 121 NEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMI 180
            E W++PDL LY  MI+L+GK+K+IE AEE+F +L+K+GL+PDTRAF EM+GAY+ V  I
Sbjct: 121 KEVWYKPDLSLYCDMILLLGKSKLIEFAEELFSELKKEGLKPDTRAFTEMIGAYIHVGRI 180

Query: 181 ERAVETYRLMIASGCTPDELTFKILIKNLEKF-REEFAVVVKEDCNEYLDNPQKFFNDNG 238
           ++ +ETY LM ASGCTPDELTF+ILIKNLEK   EE    +K++  EY+D+P++F  +  
Sbjct: 181 DKVMETYGLMKASGCTPDELTFRILIKNLEKVGEEELLASIKKEVAEYVDSPEQFLREVA 240

[Close]

BLAST of CSPI04G02700 vs. NCBI nr
Match: gi|1009167390|ref|XP_015902092.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Ziziphus jujuba])

HSP 1 Score: 260.0 bits (663), Expect = 4.2e-66
Identity = 139/242 (57.44%), Postives = 180/242 (74.38%), Query Frame = 1


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAA---PPPNIICGLRKGSNRPLGLSRVPS 60
           M ST +G  +L F ++G  Q L    L    A      P + CGLRKG+ +PL  SRV S
Sbjct: 1   MDSTSLGSPRLQFREVGFWQKLPKFQLHSSLAPNSFSTPKVKCGLRKGTRKPLWRSRVLS 60

Query: 61  NEAIQAVQSLKLAKST-SKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQ 120
           NEAIQAVQSLKLAKS  SK+E+V N ++ RLLKADL DAL+EL+RQNEL+L+LQVFKFMQ
Sbjct: 61  NEAIQAVQSLKLAKSNPSKLEEVFNGRVARLLKADLLDALAELRRQNELDLALQVFKFMQ 120

Query: 121 NEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMI 180
            E W++PDL LY  MI+L+GK+K+IE AEE+F +L+K+GL+PDTRAF EM+GAY+ V  I
Sbjct: 121 KEVWYKPDLSLYCDMILLLGKSKLIEFAEELFSELKKEGLKPDTRAFTEMIGAYIHVGRI 180

Query: 181 ERAVETYRLMIASGCTPDELTFKILIKNLEKF-REEFAVVVKEDCNEYLDNPQKFFNDNG 238
           ++ +ETY LM ASGCTPDELTF+ILIKNLEK   EE    +K++  EY+D+P++F  +  
Sbjct: 181 DKVMETYGLMKASGCTPDELTFRILIKNLEKVGEEELLASIKKEVAEYVDSPEQFLREVA 240

The following BLAST results are available for this feature:

BLAST of CSPI04G02700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP266_ARATH	1.7e-19	28.57	Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN...	[more]
PPR89_ARATH	1.0e-16	27.75	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN...	[more]
PP279_ARATH	3.6e-09	25.89	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN...	[more]
PPR76_ARATH	2.3e-08	25.89	Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidop...	[more]
PP186_ARATH	4.0e-08	32.10	Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN...	[more]

BLAST of CSPI04G02700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU23_CUCSA	9.5e-134	99.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011020 PE=4 SV=1	[more]
M5XFP6_PRUPE	6.5e-66	57.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010483mg PE=4 SV=1	[more]
A0A0D2PRX0_GOSRA	6.3e-61	54.39	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G125600 PE=4 SV=1	[more]
A0A067L9J9_JATCU	6.3e-61	54.39	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20923 PE=4 SV=1	[more]
A0A061EK44_THECC	5.3e-60	54.36	Vacuolar sorting protein 9 domain, putative isoform 1 OS=Theobroma cacao GN=TCM_...	[more]

BLAST of CSPI04G02700 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09320.1	3.0e-22	30.95	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	9.7e-21	28.57	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	5.9e-18	27.75	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G27750.1	1.6e-10	30.56	FUNCTIONS IN: molecular_function unknown	[more]
AT3G53170.1	2.0e-10	25.89	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CSPI04G02700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469204\|ref\|XP_004152311.1\|	1.4e-133	99.59	PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis s...	[more]
gi\|659108216\|ref\|XP_008454079.1\|	3.3e-119	90.46	PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis m...	[more]
gi\|645231541\|ref\|XP_008222444.1\|	6.9e-69	59.02	PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Prunus mu...	[more]
gi\|1009112576\|ref\|XP_015869106.1\|	3.2e-66	57.44	PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Ziziphus ...	[more]
gi\|1009167390\|ref\|XP_015902092.1\|	4.2e-66	57.44	PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Ziziphus ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0019682	glyceraldehyde-3-phosphate metabolic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009657	plastid organization
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0044281	small molecule metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0031977	thylakoid lumen
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G02700.1	CSPI04G02700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 128..156 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 158..205 score: 1.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 127..160 score: 3.3E-6coord: 162..195 score: 2.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 159..193 score: 10.446coord: 124..158 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 58..211 score: 7.7
None	No IPR available	PANTHER	PTHR24015:SF525	SUBFAMILY NOT NAMED	coord: 58..211 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G02700	Cla010904	Watermelon (97103) v1	cpiwmB316
CSPI04G02700	Csa4G011020	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G02700	ClCG07G015080	Watermelon (Charleston Gray)	cpiwcgB337
CSPI04G02700	Lsi07G003530	Bottle gourd (USVL1VR-Ls)	cpilsiB311
CSPI04G02700	MELO3C017777.2	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G02700	CsaV3_4G002630	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G02700	Cla97C07G142050	Watermelon (97103) v2	cpiwmbB327
CSPI04G02700	Bhi01G002876	Wax gourd	cpiwgoB376
CSPI04G02700	Cucsa.095430	Cucumber (Gy14) v1	cgycpiB103
CSPI04G02700	CmaCh14G014260	Cucurbita maxima (Rimu)	cmacpiB263
CSPI04G02700	CmoCh14G014620	Cucurbita moschata (Rifu)	cmocpiB250
CSPI04G02700	Cp4.1LG03g13020	Cucurbita pepo (Zucchini)	cpecpiB617
CSPI04G02700	CsGy4G002560	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G02700	Carg06577	Silver-seed gourd	carcpiB0133

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G02700	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G02700	Cucurbita pepo (Zucchini)	cpecpiB871
CSPI04G02700	Silver-seed gourd	carcpiB0730
CSPI04G02700	Wax gourd	cpiwgoB381
CSPI04G02700	Cucurbita maxima (Rimu)	cmacpiB850
CSPI04G02700	Cucurbita moschata (Rifu)	cmocpiB833