CSPI04G02480 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G02480
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 1444571 .. 1445000 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAAAACAGGGAAGAAGAGTTAAAGACGTTTAAGAGCTTGGGAACATGTGAGCAATTGGTGGAGGCATGCTGGAGTTCAGACTGGAAACCTCATGGCCTAGAAGGTTCTTTCTACAGCTTGTACATTTACTTAATTCATTTCTTCCATTCAACTATTCTTTTTATTCAACTAGTGGCAAAGATAAATTTTGTTCTCATTGCTTTTAATATTGTTGTTGAATGAAAATTACACATCTTTCTGTATAAATATTAGGTAAGGTTTCAAGATGCACTCTGGCACTCATTTATGAAAAGGCACAAACATTGAAGCATTCCCATTGCTTTGACGTTTGTGTCTTTTAGCTACCGTGAATATATTCAAGTTGACACATGCACTCGCCTTGACAAGAAATGTCAAAAGAAAGTTGAATGAAGAGGAAGAATAG

mRNA sequence

ATGGAGCAAAACAGGGAAGAAGAGTTAAAGACGTTTAAGAGCTTGGGAACATGTGAGCAATTGGTGGAGGCATGCTGGAGTTCAGACTGGAAACCTCATGGCCTAGAAGCTACCGTGAATATATTCAAGTTGACACATGCACTCGCCTTGACAAGAAATGTCAAAAGAAAGTTGAATGAAGAGGAAGAATAG

Coding sequence (CDS)

ATGGAGCAAAACAGGGAAGAAGAGTTAAAGACGTTTAAGAGCTTGGGAACATGTGAGCAATTGGTGGAGGCATGCTGGAGTTCAGACTGGAAACCTCATGGCCTAGAAGCTACCGTGAATATATTCAAGTTGACACATGCACTCGCCTTGACAAGAAATGTCAAAAGAAAGTTGAATGAAGAGGAAGAATAG
Homology
[Close]
BLAST of CSPI04G02480 vs. TrEMBL
Match: A0A0A0KTP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G008830 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.7e-13
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1 

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHGLEATVN 41
          MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHG E  V+
Sbjct: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHGAEGKVS 40

[Close]
BLAST of CSPI04G02480 vs. NCBI nr
Match: gi|700197822|gb|KGN52980.1| (hypothetical protein Csa_4G008830 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 5.3e-13
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1 

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHGLEATVN 41
          MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHG E  V+
Sbjct: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHGAEGKVS 40

The following BLAST results are available for this feature:
BLAST of CSPI04G02480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G02480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTP0_CUCSA3.7e-1390.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G008830 PE=4 SV=1[more]
BLAST of CSPI04G02480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G02480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197822|gb|KGN52980.1|5.3e-1390.00hypothetical protein Csa_4G008830 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G02480.1CSPI04G02480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G02480Csa4G008830Cucumber (Chinese Long) v2cpicuB182
CSPI04G02480CsaV3_4G002380Cucumber (Chinese Long) v3cpicucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G02480Cucurbita maxima (Rimu)cmacpiB263
CSPI04G02480Cucurbita maxima (Rimu)cmacpiB850
CSPI04G02480Cucurbita moschata (Rifu)cmocpiB833
CSPI04G02480Melon (DHL92) v3.5.1cpimeB310
CSPI04G02480Watermelon (Charleston Gray)cpiwcgB343
CSPI04G02480Watermelon (97103) v1cpiwmB307
CSPI04G02480Cucurbita pepo (Zucchini)cpecpiB617
CSPI04G02480Cucurbita pepo (Zucchini)cpecpiB871
CSPI04G02480Bottle gourd (USVL1VR-Ls)cpilsiB311
CSPI04G02480Melon (DHL92) v3.6.1cpimedB301
CSPI04G02480Cucumber (Gy14) v2cgybcpiB168
CSPI04G02480Silver-seed gourdcarcpiB0133
CSPI04G02480Silver-seed gourdcarcpiB0730
CSPI04G02480Watermelon (97103) v2cpiwmbB333
CSPI04G02480Wax gourdcpiwgoB381
CSPI04G02480Cucurbita moschata (Rifu)cmocpiB250
CSPI04G02480Cucumber (Gy14) v1cgycpiB103