CSPI04G02410 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G02410
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Phenylalanine ammonia-lyase
Location	Chr4 : 1401792 .. 1402356 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAGCAACCATTTCAAACCCAATTCAAATTTATCCTCTCTCATTATTCCTTACTCTCTGTGCAGTACACTCTTAAATTAAAATGGCCCAAAAGGTTAATGCTAACCAAAATGGTTCAATGGAAAGCTTGTGCAGCAGCCATCAGGATCCACTCAACTGGGGTTTGGCCGCTGATTCCATGAAGGGAAGCCATCTGGATGAGGTCAAGCGGATGGTGGAAGAGTATCGAAGGCCTTTGGTTAAGCTTGGAGGACAAACTCTCACCATTTCTCAGGTTGCTGCCATTGCCACTCGTGATAATGATGTCCTTGTAGAATTGGCCGAGTCTGCAAGGGCCGGTGTCAAAGCTAGCAGCGATTGGGTGATGGAGAGTATGGGTAAAGGTACTGATAGCTATGGTGTCACCACTGGGTTTGGTGCCACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATTCGGTTTTTGAATGCTGGCATCTTTGGAAATGGAAGTGAATCGAATCACACTTTGCCTCACTCTAAATTGATGAAGAAATTGAGTTCTTGTTGA

mRNA sequence

ATGGCCCAAAAGGTTAATGCTAACCAAAATGGTTCAATGGAAAGCTTGTGCAGCAGCCATCAGGATCCACTCAACTGGGGTTTGGCCGCTGATTCCATGAAGGGAAGCCATCTGGATGAGGTCAAGCGGATGGTGGAAGAGTATCGAAGGCCTTTGGTTAAGCTTGGAGGACAAACTCTCACCATTTCTCAGGTTGCTGCCATTGCCACTCGTGATAATGATGTCCTTGTAGAATTGGCCGAGTCTGCAAGGGCCGGTGTCAAAGCTAGCAGCGATTGGGTGATGGAGAGTATGGGTAAAGGTACTGATAGCTATGGTGTCACCACTGGGTTTGGTGCCACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATTCGGTTTTTGAATGCTGGCATCTTTGGAAATGGAAGTGAATCGAATCACACTTTGCCTCACTCTAAATTGATGAAGAAATTGAGTTCTTGTTGA

Coding sequence (CDS)

ATGGCCCAAAAGGTTAATGCTAACCAAAATGGTTCAATGGAAAGCTTGTGCAGCAGCCATCAGGATCCACTCAACTGGGGTTTGGCCGCTGATTCCATGAAGGGAAGCCATCTGGATGAGGTCAAGCGGATGGTGGAAGAGTATCGAAGGCCTTTGGTTAAGCTTGGAGGACAAACTCTCACCATTTCTCAGGTTGCTGCCATTGCCACTCGTGATAATGATGTCCTTGTAGAATTGGCCGAGTCTGCAAGGGCCGGTGTCAAAGCTAGCAGCGATTGGGTGATGGAGAGTATGGGTAAAGGTACTGATAGCTATGGTGTCACCACTGGGTTTGGTGCCACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATTCGGTTTTTGAATGCTGGCATCTTTGGAAATGGAAGTGAATCGAATCACACTTTGCCTCACTCTAAATTGATGAAGAAATTGAGTTCTTGTTGA

Homology

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BLAST of CSPI04G02410 vs. Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.9e-60
Identity = 116/147 (78.91%), Postives = 133/147 (90.48%), Query Frame = 1


Query: 6   NANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQV 65
           N  QNGS+ESLC + +DPL+WG+AA++MKGSHLDEVKRMV +YR+P+VKLGG+TLTI+QV
Sbjct: 7   NGYQNGSLESLCVNQRDPLSWGVAAEAMKGSHLDEVKRMVADYRKPVVKLGGETLTIAQV 66

Query: 66  AAIATRDN-DVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTNQGGA 125
           A+IA  D  DV VEL+ESAR GVKASSDWVM+SM KGTDSYGVTTGFGATSHRRT QGGA
Sbjct: 67  ASIAGHDTGDVKVELSESARPGVKASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGA 126

Query: 126 LQKELIRFLNAGIFGNGSESNHTLPHS 152
           LQKELIRFLNAGIFGNG+E+ HTLPHS
Sbjct: 127 LQKELIRFLNAGIFGNGTETCHTLPHS 153

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BLAST of CSPI04G02410 vs. Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.5e-59
Identity = 116/153 (75.82%), Postives = 131/153 (85.62%), Query Frame = 1


Query: 9   QNGSMESLCSSHQ----------DPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQ 68
           +N   ES C ++           DPLNWG+AA++MKGSHLDEVKRMVEEYR+P+V+LGG+
Sbjct: 10  KNNGYESFCVTNAKNNNMKVNSADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGE 69

Query: 69  TLTISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRR 128
           TLTISQVAAIA  D+ V VEL+ESARAGVKASSDWVMESM KGTDSYGVTTGFGATSHRR
Sbjct: 70  TLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR 129

Query: 129 TNQGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           T QGGALQKELIRFLNAGIFGNG+ES+HTLPH+
Sbjct: 130 TKQGGALQKELIRFLNAGIFGNGTESSHTLPHT 162

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BLAST of CSPI04G02410 vs. Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.5e-59
Identity = 116/151 (76.82%), Postives = 128/151 (84.77%), Query Frame = 1


Query: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60
           MA  V    +G+    C    DPLNW  AA+ +KGSHLDEVKRMVEE+R+ +VKLGG+TL
Sbjct: 1   MAAVVENGHHGN-NGFCVKQNDPLNWVAAAEELKGSHLDEVKRMVEEFRKTVVKLGGETL 60

Query: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120
           TISQVAAIA RDN+V V+LAES+RAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRT 
Sbjct: 61  TISQVAAIAARDNEVAVQLAESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK 120

Query: 121 QGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           QGGALQKELIRFLNAGIFGNG+ES HTLPHS
Sbjct: 121 QGGALQKELIRFLNAGIFGNGTESTHTLPHS 150

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BLAST of CSPI04G02410 vs. Swiss-Prot
Match: PALY_TRISU (Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.7e-58
Identity = 117/161 (72.67%), Postives = 131/161 (81.37%), Query Frame = 1


Query: 1   MAQKVNANQNGSMESLCSSHQ----------DPLNWGLAADSMKGSHLDEVKRMVEEYRR 60
           +A  +  N     +S C +H           DPLNWG+AA++MKGSHLDEVKRMVEEYR+
Sbjct: 4   VAAAILKNNINDYDSFCLTHANANNMKVNAADPLNWGVAAEAMKGSHLDEVKRMVEEYRK 63

Query: 61  PLVKLGGQTLTISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTG 120
           P+V+LGG+TLTISQVAAIA  D    VEL+ESARAGVKASSDWVMESM KGTDSYGVTTG
Sbjct: 64  PVVRLGGETLTISQVAAIAAHDG-ATVELSESARAGVKASSDWVMESMNKGTDSYGVTTG 123

Query: 121 FGATSHRRTNQGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           FGATSHRRT QGGALQKELIRFLNAGIFGNG+ESNHTLPH+
Sbjct: 124 FGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHTLPHT 163

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BLAST of CSPI04G02410 vs. Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.6e-58
Identity = 114/144 (79.17%), Postives = 129/144 (89.58%), Query Frame = 1


Query: 8   NQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAA 67
           N NG ME  C   +DPLNWG+AA+SMKGSHLDEVK+MV E+R+P+V+L G+TLTI+QVAA
Sbjct: 3   NGNGKME-FCM--KDPLNWGMAAESMKGSHLDEVKKMVAEFRKPVVQLAGKTLTIAQVAA 62

Query: 68  IATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTNQGGALQK 127
           IA RD+ V VELAE+AR GVKASSDWVMESM KGTDSYGVTTGFGATSHRRT QGGALQK
Sbjct: 63  IAARDDGVTVELAEAAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQK 122

Query: 128 ELIRFLNAGIFGNGSESNHTLPHS 152
           ELIRFLNAGIFGNG+E++HTLPHS
Sbjct: 123 ELIRFLNAGIFGNGTETSHTLPHS 143

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BLAST of CSPI04G02410 vs. TrEMBL
Match: G8HZH6_CUCSA (Phenylalanine ammonia-lyase OS=Cucumis sativus GN=PAL PE=2 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 6.3e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 1


Query: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60
           MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120
           TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           QGGALQKELIRFLN+GIFGNGSESNHTLPHS
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSESNHTLPHS 151

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BLAST of CSPI04G02410 vs. TrEMBL
Match: A0A0A0KVS6_CUCSA (Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_4G008770 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 6.3e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 1


Query: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60
           MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120
           TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           QGGALQKELIRFLN+GIFGNGSESNHTLPHS
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSESNHTLPHS 151

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BLAST of CSPI04G02410 vs. TrEMBL
Match: A0A0A0KTN3_CUCSA (Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_4G008780 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-77
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 1


Query: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60
           MAQKVNANQNGSMES CSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESFCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120
           TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           QGGALQKELIRFLN+GIFGNGSESNHTLPHS
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSESNHTLPHS 151

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BLAST of CSPI04G02410 vs. TrEMBL
Match: A0A0A0KTW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G008760 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.5e-74
Identity = 143/151 (94.70%), Postives = 150/151 (99.34%), Query Frame = 1


Query: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60
           MAQKV ANQNGS+E+LC++HQDPLNWGLAA+SMKGSHLDEVKRMVEEYRRPLVKLGG+TL
Sbjct: 1   MAQKVCANQNGSVETLCNTHQDPLNWGLAAESMKGSHLDEVKRMVEEYRRPLVKLGGETL 60

Query: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120
           TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           QGGALQKELIRFLN+GIFGNGSESNHTLPHS
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSESNHTLPHS 151

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BLAST of CSPI04G02410 vs. TrEMBL
Match: A0A0A0KH72_CUCSA (Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_6G445770 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.5e-66
Identity = 129/146 (88.36%), Postives = 141/146 (96.58%), Query Frame = 1


Query: 7   ANQNGSMESLCSSHQ-DPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQV 66
           A+QNGSMES C+SH  DPLNWG+AA+++KGSHLDEVKRMV+EYRRP+VKLGG+TLTISQV
Sbjct: 10  AHQNGSMESFCTSHVVDPLNWGVAAEALKGSHLDEVKRMVDEYRRPVVKLGGETLTISQV 69

Query: 67  AAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTNQGGAL 126
           AAIATRDNDV+V+LAESARAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRT QGGAL
Sbjct: 70  AAIATRDNDVVVKLAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGAL 129

Query: 127 QKELIRFLNAGIFGNGSESNHTLPHS 152
           QKELIRFLNAGIFGNG+ESNHTLPHS
Sbjct: 130 QKELIRFLNAGIFGNGAESNHTLPHS 155

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BLAST of CSPI04G02410 vs. TAIR10
Match: AT3G53260.1 (AT3G53260.1 phenylalanine ammonia-lyase 2)

HSP 1 Score: 210.3 bits (534), Expect = 8.8e-55
Identity = 106/130 (81.54%), Postives = 113/130 (86.92%), Query Frame = 1


Query: 22  DPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAAIATRDNDVLVELAE 81
           DPLNWGLAAD MKGSHLDEVK+MVEEYRRP+V LGG+TLTI QVAAI+T    V VELAE
Sbjct: 26  DPLNWGLAADQMKGSHLDEVKKMVEEYRRPVVNLGGETLTIGQVAAISTVGGSVKVELAE 85

Query: 82  SARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGNG 141
           ++RAGVKASSDWVMESM KGTDSYGVTTGFGATSHRRT  G ALQ ELIRFLNAGIFGN 
Sbjct: 86  TSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGTALQTELIRFLNAGIFGNT 145

Query: 142 SESNHTLPHS 152
            E+ HTLP S
Sbjct: 146 KETCHTLPQS 155

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BLAST of CSPI04G02410 vs. TAIR10
Match: AT2G37040.1 (AT2G37040.1 PHE ammonia lyase 1)

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-54
Identity = 103/131 (78.63%), Postives = 115/131 (87.79%), Query Frame = 1


Query: 21  QDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAAIATRDNDVLVELA 80
           +DPLNWG AA+ MKGSHLDEVKRMV E+R+P+V LGG+TLTI QVAAI+T  N V VEL+
Sbjct: 33  EDPLNWGAAAEQMKGSHLDEVKRMVAEFRKPVVNLGGETLTIGQVAAISTIGNSVKVELS 92

Query: 81  ESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGN 140
           E+ARAGV ASSDWVMESM KGTDSYGVTTGFGATSHRRT  G ALQKELIRFLNAGIFG+
Sbjct: 93  ETARAGVNASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGVALQKELIRFLNAGIFGS 152

Query: 141 GSESNHTLPHS 152
             E++HTLPHS
Sbjct: 153 TKETSHTLPHS 163

[Close]

BLAST of CSPI04G02410 vs. TAIR10
Match: AT3G10340.1 (AT3G10340.1 phenylalanine ammonia-lyase 4)

HSP 1 Score: 193.7 bits (491), Expect = 8.5e-50
Identity = 100/143 (69.93%), Postives = 116/143 (81.12%), Query Frame = 1


Query: 8   NQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAA 67
           NQN  + ++     DPLNW   A+++KGSHLDEVKRMV+EYR+  VKLGG+TLTI QVAA
Sbjct: 5   NQNNHITAVSG---DPLNWNATAEALKGSHLDEVKRMVKEYRKEAVKLGGETLTIGQVAA 64

Query: 68  IATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTNQGGALQK 127
           +A       VELAE ARAGVKASS+WVMESM +GTDSYGVTTGFGATSHRRT QGGALQ 
Sbjct: 65  VARGGGGSTVELAEEARAGVKASSEWVMESMNRGTDSYGVTTGFGATSHRRTKQGGALQN 124

Query: 128 ELIRFLNAGIFGNGS-ESNHTLP 150
           ELIRFLNAGIFG G+ +++HTLP
Sbjct: 125 ELIRFLNAGIFGPGAGDTSHTLP 144

[Close]

BLAST of CSPI04G02410 vs. TAIR10
Match: AT5G04230.2 (AT5G04230.2 phenyl alanine ammonia-lyase 3)

HSP 1 Score: 170.2 bits (430), Expect = 1.0e-42
Identity = 85/131 (64.89%), Postives = 109/131 (83.21%), Query Frame = 1


Query: 22  DPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAAIATRDNDVLVELAE 81
           DPLNW +AA+++KGSHL+EVK+MV++YR+  V+LGG+TLTI QVAA+A+      VEL+E
Sbjct: 13  DPLNWNVAAEALKGSHLEEVKKMVKDYRKGTVQLGGETLTIGQVAAVAS--GGPTVELSE 72

Query: 82  SARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGNG 141
            AR GVKASSDWVMESM + TD+YG+TTGFG++S RRT+QG ALQKELIR+LNAGIF  G
Sbjct: 73  EARGGVKASSDWVMESMNRDTDTYGITTGFGSSSRRRTDQGAALQKELIRYLNAGIFATG 132

Query: 142 SES---NHTLP 150
           +E    ++TLP
Sbjct: 133 NEDDDRSNTLP 141

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BLAST of CSPI04G02410 vs. NCBI nr
Match: gi|778697444|ref|XP_004152155.2| (PREDICTED: phenylalanine ammonia-lyase-like [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 9.1e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 1


Query: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60
           MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120
           TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           QGGALQKELIRFLN+GIFGNGSESNHTLPHS
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSESNHTLPHS 151

[Close]

BLAST of CSPI04G02410 vs. NCBI nr
Match: gi|821595363|ref|NP_001295839.1| (phenylalanine ammonia-lyase-like [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 9.1e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 1


Query: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60
           MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120
           TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           QGGALQKELIRFLN+GIFGNGSESNHTLPHS
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSESNHTLPHS 151

[Close]

BLAST of CSPI04G02410 vs. NCBI nr
Match: gi|778689757|ref|XP_011653013.1| (PREDICTED: phenylalanine ammonia-lyase-like [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 2.6e-77
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 1


Query: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60
           MAQKVNANQNGSMES CSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESFCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120
           TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           QGGALQKELIRFLN+GIFGNGSESNHTLPHS
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSESNHTLPHS 151

[Close]

BLAST of CSPI04G02410 vs. NCBI nr
Match: gi|659108321|ref|XP_008454137.1| (PREDICTED: phenylalanine ammonia-lyase-like [Cucumis melo])

HSP 1 Score: 288.5 bits (737), Expect = 7.2e-75
Identity = 145/151 (96.03%), Postives = 149/151 (98.68%), Query Frame = 1


Query: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60
           MAQKV+ANQNGS ESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGG+TL
Sbjct: 1   MAQKVHANQNGSTESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGETL 60

Query: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120
           TISQVAAIATRDNDV+VELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVVVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           QGGALQKELIRFLN+GIFGN SESNHTLPHS
Sbjct: 121 QGGALQKELIRFLNSGIFGNESESNHTLPHS 151

[Close]

BLAST of CSPI04G02410 vs. NCBI nr
Match: gi|659108323|ref|XP_008454138.1| (PREDICTED: phenylalanine ammonia-lyase-like [Cucumis melo])

HSP 1 Score: 287.7 bits (735), Expect = 1.2e-74
Identity = 144/151 (95.36%), Postives = 149/151 (98.68%), Query Frame = 1


Query: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60
           MAQ V ANQNGS+ESLC+SHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGG+TL
Sbjct: 1   MAQNVCANQNGSVESLCNSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGETL 60

Query: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120
           TISQVAAIATRDNDV+VELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVVVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNAGIFGNGSESNHTLPHS 152
           QGGALQKELIRFLN+GIFGNGSESNHTLPHS
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSESNHTLPHS 151

The following BLAST results are available for this feature:

BLAST of CSPI04G02410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PALY_POPTR	2.9e-60	78.91	Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1	[more]
PAL1_PEA	2.5e-59	75.82	Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1	[more]
PALY_DIGLA	5.5e-59	76.82	Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1	[more]
PALY_TRISU	2.7e-58	72.67	Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1	[more]
PAL2_LITER	3.6e-58	79.17	Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1	[more]

BLAST of CSPI04G02410 vs. TrEMBL


Match Name	E-value	Identity	Description
G8HZH6_CUCSA	6.3e-78	99.34	Phenylalanine ammonia-lyase OS=Cucumis sativus GN=PAL PE=2 SV=1	[more]
A0A0A0KVS6_CUCSA	6.3e-78	99.34	Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_4G008770 PE=3 SV=1	[more]
A0A0A0KTN3_CUCSA	1.8e-77	98.68	Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_4G008780 PE=3 SV=1	[more]
A0A0A0KTW0_CUCSA	1.5e-74	94.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G008760 PE=4 SV=1	[more]
A0A0A0KH72_CUCSA	2.5e-66	88.36	Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_6G445770 PE=3 SV=1	[more]

BLAST of CSPI04G02410 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53260.1	8.8e-55	81.54	phenylalanine ammonia-lyase 2	[more]
AT2G37040.1	2.6e-54	78.63	PHE ammonia lyase 1	[more]
AT3G10340.1	8.5e-50	69.93	phenylalanine ammonia-lyase 4	[more]
AT5G04230.2	1.0e-42	64.89	phenyl alanine ammonia-lyase 3	[more]

BLAST of CSPI04G02410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697444\|ref\|XP_004152155.2\|	9.1e-78	99.34	PREDICTED: phenylalanine ammonia-lyase-like [Cucumis sativus]	[more]
gi\|821595363\|ref\|NP_001295839.1\|	9.1e-78	99.34	phenylalanine ammonia-lyase-like [Cucumis sativus]	[more]
gi\|778689757\|ref\|XP_011653013.1\|	2.6e-77	98.68	PREDICTED: phenylalanine ammonia-lyase-like [Cucumis sativus]	[more]
gi\|659108321\|ref\|XP_008454137.1\|	7.2e-75	96.03	PREDICTED: phenylalanine ammonia-lyase-like [Cucumis melo]	[more]
gi\|659108323\|ref\|XP_008454138.1\|	1.2e-74	95.36	PREDICTED: phenylalanine ammonia-lyase-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001106	Aromatic_Lyase
IPR008948	L-Aspartase-like
IPR024083	Fumarase/histidase_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009821	alkaloid biosynthetic process
biological_process	GO:0009800	cinnamic acid biosynthetic process
biological_process	GO:0006559	L-phenylalanine catabolic process
biological_process	GO:0006570	tyrosine metabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0045548	phenylalanine ammonia-lyase activity
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G02410.1	CSPI04G02410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001106	Aromatic amino acid lyase	PFAM	PF00221	Lyase_aromatic	coord: 60..138 score: 3.3
IPR008948	L-Aspartase-like	unknown	SSF48557	L-aspartase-like	coord: 22..149 score: 1.96
IPR024083	Fumarase/histidase, N-terminal	GENE3D	G3DSA:1.10.275.10		coord: 21..151 score: 6.5
None	No IPR available	PANTHER	PTHR10362	HISTIDINE AMMONIA-LYASE	coord: 1..151 score: 9.1
None	No IPR available	PANTHER	PTHR10362:SF17	SUBFAMILY NOT NAMED	coord: 1..151 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G02410	Cucurbita pepo (Zucchini)	cpecpiB617
CSPI04G02410	Cucurbita pepo (Zucchini)	cpecpiB871
CSPI04G02410	Bottle gourd (USVL1VR-Ls)	cpilsiB311
CSPI04G02410	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G02410	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G02410	Silver-seed gourd	carcpiB0133
CSPI04G02410	Silver-seed gourd	carcpiB0730
CSPI04G02410	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G02410	Watermelon (97103) v2	cpiwmbB333
CSPI04G02410	Wax gourd	cpiwgoB381
CSPI04G02410	Cucurbita moschata (Rifu)	cmocpiB250
CSPI04G02410	Cucumber (Gy14) v1	cgycpiB103
CSPI04G02410	Cucurbita maxima (Rimu)	cmacpiB263
CSPI04G02410	Cucurbita maxima (Rimu)	cmacpiB850
CSPI04G02410	Cucurbita moschata (Rifu)	cmocpiB833
CSPI04G02410	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G02410	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G02410	Watermelon (Charleston Gray)	cpiwcgB343
CSPI04G02410	Watermelon (97103) v1	cpiwmB307