CSPI04G00350 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G00350
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 195535 .. 197022 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTTCCTTTTGTACTTAGGAATATCTGTCTTTTAAAATTTTAAATCTAAGAGAAAAGAAAAGAAAACAAGCTAAAATTTATATATATTTTATTTAGTTATAGTAGAAGGATGAAATAACAGAGGAGGGATGTGGAATAATGGAAAGGGGAAGCTCATGGGTTGGGAAGGAATATATGAAAAAAAAATACTCTGCCCTCCAATCTTCAAAAGCATGCTTTAAGGTATATCTTTTTATTAGATTCTATATATATTTTTCTATAATAAAATTGAGTAAATGATTTGTTTCCTCAAATTAAGATTTAATTCCTTCTGAAAAGATAACTTCAAGTCTTGTTAAGTTTAGGGGAGTCTAAATTCTATACTACTAAAATACCATATACTTAGCTAAGTTCTTATTCAAGAGAGAGACAATCAGGAGAAGTCTAAACGTTGTAAGTGCTTAAACTCTAAGCACATCCTCTAGGAATCTCTTCAAAAGGAAATTAATTTGTAAAATATATTTTATTGCACATGCTAATATTATATAATAAGAGGTTGGACACAATAGTTGATAGATAATTCCAAACTTGGACACAATAGTTGATAGATCTATTATATATTGACAAGTCCCTTGCTATTATTGTTATTTATTCTAGTTGATTTTGAGGATAAGAAGAGGAGTGGTTGAAAAGAGATGATCTATTATTAAAATATAAATTAAATATGTATTGGGATAAGATAGTATTTAGGATTATTCAAACTATACCTTAAAATAATTATACACTAAGCAGAGATAAATTAAATATGCAAATGAATTATTGAAGCTCTCGCCTTTCACATTTTTGGTTATAAATAGAAGGGAAATACAAAGCATAGGGAGGAAGATAATATATAGAAAGAGAGGAAGGAGAAAAGAAAATAGTAAGAAAATGAAGAGGATGGATAAGAACATTGGTTTGGCCGTGGCCACGATGATGGTGATGATGCTTCTGATTGCTACTGTCGTGGAATCAGCCTCTCCTACCGAGAAGATCACGATGATCGAACTCGTCACCAACCACCATGCTGCCAGTTCTTTTCCACGCAAAATGATGAGAAATGGGAAAGGAAATGGAGTTTGTCCCATAATAGGTTGGCCTTGCAATCCTGAGTACGGCGGCTGTGGCCCTTTCTCCGACACTTGTGCTTGCTACACTGCTGGACATTGTGGAGATTTCGTTGGTTGAAGCTGCACTTTTGTGTTATATCTTTTTCCTTAGTCTTTCCTGTGTTTCGATGTTTTTCCAAAATAAATATGATGATCTCTCTCTCTTGTGAGATCAATGATAAGTTTATGTAACAAAATCTTATGTTCTTAGATGCACAAAATGGGAGGAGGATTTTCTTTTCTTTTCATTGCTTTCTAAAATATTGAAGCCTTTTATCTTATGACTTAACCTTTAATATAAAAAAAAAAATGTTACGACTCACATAAAAATCTACATGTTTGTCTAATTTTATCTCGAT

mRNA sequence

ATGAAGAGGATGGATAAGAACATTGGTTTGGCCGTGGCCACGATGATGGTGATGATGCTTCTGATTGCTACTGTCGTGGAATCAGCCTCTCCTACCGAGAAGATCACGATGATCGAACTCGTCACCAACCACCATGCTGCCAGTTCTTTTCCACGCAAAATGATGAGAAATGGGAAAGGAAATGGAGTTTGTCCCATAATAGGTTGGCCTTGCAATCCTGAGTACGGCGGCTGTGGCCCTTTCTCCGACACTTGTGCTTGCTACACTGCTGGACATTGTGGAGATTTCGTTGGTTGA

Coding sequence (CDS)

ATGAAGAGGATGGATAAGAACATTGGTTTGGCCGTGGCCACGATGATGGTGATGATGCTTCTGATTGCTACTGTCGTGGAATCAGCCTCTCCTACCGAGAAGATCACGATGATCGAACTCGTCACCAACCACCATGCTGCCAGTTCTTTTCCACGCAAAATGATGAGAAATGGGAAAGGAAATGGAGTTTGTCCCATAATAGGTTGGCCTTGCAATCCTGAGTACGGCGGCTGTGGCCCTTTCTCCGACACTTGTGCTTGCTACACTGCTGGACATTGTGGAGATTTCGTTGGTTGA
Homology
[Close]
BLAST of CSPI04G00350 vs. TrEMBL
Match: A0A0A0KWE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000820 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-48
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG 60
          MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG
Sbjct: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG 60

Query: 61 NGVCPIIGWPCNPEYGGCGPFSDTCACYTAGHCGDFVG 99
          NGVCPIIG PCNPEYGGCGPFSDTCACYTAGHCGDFVG
Sbjct: 61 NGVCPIIGRPCNPEYGGCGPFSDTCACYTAGHCGDFVG 98

[Close]
BLAST of CSPI04G00350 vs. NCBI nr
Match: gi|700197604|gb|KGN52762.1| (hypothetical protein Csa_4G000820 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 2.7e-48
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG 60
          MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG
Sbjct: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG 60

Query: 61 NGVCPIIGWPCNPEYGGCGPFSDTCACYTAGHCGDFVG 99
          NGVCPIIG PCNPEYGGCGPFSDTCACYTAGHCGDFVG
Sbjct: 61 NGVCPIIGRPCNPEYGGCGPFSDTCACYTAGHCGDFVG 98

The following BLAST results are available for this feature:
BLAST of CSPI04G00350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G00350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWE4_CUCSA1.9e-4898.98Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000820 PE=4 SV=1[more]
BLAST of CSPI04G00350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G00350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197604|gb|KGN52762.1|2.7e-4898.98hypothetical protein Csa_4G000820 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G00350.2CSPI04G00350.2mRNA
CSPI04G00350.1CSPI04G00350.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G00350Cla006429Watermelon (97103) v1cpiwmB291
CSPI04G00350Csa4G000820Cucumber (Chinese Long) v2cpicuB182
CSPI04G00350MELO3C018002Melon (DHL92) v3.5.1cpimeB310
CSPI04G00350ClCG10G010370Watermelon (Charleston Gray)cpiwcgB280
CSPI04G00350MELO3C018003.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G00350CsaV3_4G000310Cucumber (Chinese Long) v3cpicucB213
CSPI04G00350Cla97C10G193280Watermelon (97103) v2cpiwmbB278
CSPI04G00350Bhi11G000943Wax gourdcpiwgoB358
CSPI04G00350Cucsa.097520Cucumber (Gy14) v1cgycpiB103
CSPI04G00350CsGy4G000310Cucumber (Gy14) v2cgybcpiB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G00350Wild cucumber (PI 183967)cpicpiB151
CSPI04G00350Wild cucumber (PI 183967)cpicpiB169
CSPI04G00350Cucumber (Gy14) v1cgycpiB522
CSPI04G00350Cucurbita maxima (Rimu)cmacpiB338
CSPI04G00350Cucurbita maxima (Rimu)cmacpiB715
CSPI04G00350Cucurbita moschata (Rifu)cmocpiB329
CSPI04G00350Cucurbita moschata (Rifu)cmocpiB709
CSPI04G00350Cucumber (Chinese Long) v2cpicuB188
CSPI04G00350Cucumber (Chinese Long) v2cpicuB207
CSPI04G00350Melon (DHL92) v3.5.1cpimeB276
CSPI04G00350Melon (DHL92) v3.5.1cpimeB309
CSPI04G00350Cucurbita pepo (Zucchini)cpecpiB221
CSPI04G00350Cucurbita pepo (Zucchini)cpecpiB399
CSPI04G00350Bottle gourd (USVL1VR-Ls)cpilsiB274
CSPI04G00350Cucumber (Gy14) v2cgybcpiB179
CSPI04G00350Silver-seed gourdcarcpiB0328
CSPI04G00350Silver-seed gourdcarcpiB0407
CSPI04G00350Cucumber (Chinese Long) v3cpicucB224
CSPI04G00350Watermelon (97103) v2cpiwmbB296