CSPI03G46320 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G46320
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 39576252 .. 39576491 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAATTCTCTTTCATTCTCATCTTCATTTTGGCCTTCATTTCAGTTACTGTAGCTGCTGCCATTGGAGTTATGAGCAAAGGAAAAGATGTTGCAACGAAGTTTCATTATCATGATGAGTTCATATGGGGAAGAAAGGAGAGAATTAACCATGGAAGCTTTAGAGGTCCAGATAAATACCTTCTCAATGATCCTCACCCATTTCACCCATTTGATCAATTTCAAGACCCTATTCTC

mRNA sequence

ATGGCTAAATTCTCTTTCATTCTCATCTTCATTTTGGCCTTCATTTCAGTTACTGTAGCTGCTGCCATTGGAGTTATGAGCAAAGGAAAAGATGTTGCAACGAAGTTTCATTATCATGATGAGTTCATATGGGGAAGAAAGGAGAGAATTAACCATGGAAGCTTTAGAGGTCCAGATAAATACCTTCTCAATGATCCTCACCCATTTCACCCATTTGATCAATTTCAAGACCCTATTCTC

Coding sequence (CDS)

ATGGCTAAATTCTCTTTCATTCTCATCTTCATTTTGGCCTTCATTTCAGTTACTGTAGCTGCTGCCATTGGAGTTATGAGCAAAGGAAAAGATGTTGCAACGAAGTTTCATTATCATGATGAGTTCATATGGGGAAGAAAGGAGAGAATTAACCATGGAAGCTTTAGAGGTCCAGATAAATACCTTCTCAATGATCCTCACCCATTTCACCCATTTGATCAATTTCAAGACCCTATTCTC

Homology

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BLAST of CSPI03G46320 vs. TrEMBL
Match: A0A0A0LH37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895900 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-36
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 1


Query: 1  MAKFSFILIFILAFISVTVAAAIGVMSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK 60
          MAKFSFILIFILAFISVTVAAAIG MSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK
Sbjct: 1  MAKFSFILIFILAFISVTVAAAIGDMSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK 60

Query: 61 YLLNDPHPFHPFDQFQDPIL 81
          YLLNDPHPFHPFDQFQ PIL
Sbjct: 61 YLLNDPHPFHPFDQFQGPIL 80

[Close]

BLAST of CSPI03G46320 vs. NCBI nr
Match: gi|700205211|gb|KGN60344.1| (hypothetical protein Csa_3G895900 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-36
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 1


Query: 1  MAKFSFILIFILAFISVTVAAAIGVMSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK 60
          MAKFSFILIFILAFISVTVAAAIG MSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK
Sbjct: 1  MAKFSFILIFILAFISVTVAAAIGDMSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK 60

Query: 61 YLLNDPHPFHPFDQFQDPIL 81
          YLLNDPHPFHPFDQFQ PIL
Sbjct: 61 YLLNDPHPFHPFDQFQGPIL 80

The following BLAST results are available for this feature:

BLAST of CSPI03G46320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G46320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH37_CUCSA	1.7e-36	97.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895900 PE=4 SV=1	[more]

BLAST of CSPI03G46320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G46320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205211\|gb\|KGN60344.1\|	2.5e-36	97.50	hypothetical protein Csa_3G895900 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G46320.1	CSPI03G46320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G46320	Csa3G895900	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G46320	CsaV3_3G048770	Cucumber (Chinese Long) v3	cpicucB145
CSPI03G46320	Cucsa.312750	Cucumber (Gy14) v1	cgycpiB473
CSPI03G46320	CmaCh02G016420	Cucurbita maxima (Rimu)	cmacpiB607
CSPI03G46320	Cp4.1LG05g00310	Cucurbita pepo (Zucchini)	cpecpiB719

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G46320	Melon (DHL92) v3.5.1	cpimeB215
CSPI03G46320	Watermelon (Charleston Gray)	cpiwcgB178
CSPI03G46320	Watermelon (97103) v1	cpiwmB183
CSPI03G46320	Cucurbita pepo (Zucchini)	cpecpiB243
CSPI03G46320	Bottle gourd (USVL1VR-Ls)	cpilsiB146
CSPI03G46320	Melon (DHL92) v3.6.1	cpimedB209
CSPI03G46320	Cucumber (Gy14) v2	cgybcpiB111
CSPI03G46320	Silver-seed gourd	carcpiB0091
CSPI03G46320	Watermelon (97103) v2	cpiwmbB260
CSPI03G46320	Wax gourd	cpiwgoB304
CSPI03G46320	Cucurbita maxima (Rimu)	cmacpiB517
CSPI03G46320	Cucurbita moschata (Rifu)	cmocpiB507