CSPI03G46150 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G46150
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 39466205 .. 39466794 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTGATGGTTCCTAATTTGGATCTGTTAGCTCTTGCTTGCCTCTATGGTTCCTTCATAGCTCTAATTCTCCTCCTCATCATCTTCTTCCTCTTGATTGTGCTGTTTCTATCATCTTCCCTGGCACTGTTTTCAGTATTTGTGAGTGACTTGTTTGATGCCTACTCAGTTATGAGTCTGTACTATGAAGACGTGAAAGCTGAAATTGAATTGGGTTTAAGTTTAATTGTGTTTGGAGTAATGGGGTTTGGTGTTGATGTTGTTTTGTATACAAAATCTCTCCTCCGACAGCAAAATCTAAGATTGAAGAACATAAGGCAACAACAGATGAAGTTTAAAGAAAATTGGAGGTTGGGGTTTGGCATGCTTGAGGAGCTATGAATGTTGTTCACCATTACTTTTCAGAAAAACTCTCTTCTCAGTAATAATGATCCTCGTGCTTCACCTGATTCTCTGCCTTCTGTTGCCATCATCGTCTTTTTCCTTTCTCAAATTATGGAGCTAACAACATGGTGCCATTACATCAATTTCAACCTCTGTTCTTTTGTTGTACATCCAATTATTTTGTTAGCATAGGGAAAATAAAGGGCC

mRNA sequence

ATGGTTCCTAATTTGGATCTGTTAGCTCTTGCTTGCCTCTATGGTTCCTTCATAGCTCTAATTCTCCTCCTCATCATCTTCTTCCTCTTGATTGTGCTGTTTCTATCATCTTCCCTGGCACTGTTTTCAGTATTTGTGAGTGACTTGTTTGATGCCTACTCAGTTATGAGTCTGTACTATGAAGACGTGAAAGCTGAAATTGAATTGGGTTTAAGTTTAATTGTGTTTGGAGTAATGGGGTTTGGTGTTGATGTTGTTTTGTATACAAAATCTCTCCTCCGACAGCAAAATCTAAGATTGAAGAACATAAGGCAACAACAGATGAAGTTTAAAGAAAATTGGAGGTTGGGGTTTGGCATGCTTGAGGAGCTATGA

Coding sequence (CDS)

ATGGTTCCTAATTTGGATCTGTTAGCTCTTGCTTGCCTCTATGGTTCCTTCATAGCTCTAATTCTCCTCCTCATCATCTTCTTCCTCTTGATTGTGCTGTTTCTATCATCTTCCCTGGCACTGTTTTCAGTATTTGTGAGTGACTTGTTTGATGCCTACTCAGTTATGAGTCTGTACTATGAAGACGTGAAAGCTGAAATTGAATTGGGTTTAAGTTTAATTGTGTTTGGAGTAATGGGGTTTGGTGTTGATGTTGTTTTGTATACAAAATCTCTCCTCCGACAGCAAAATCTAAGATTGAAGAACATAAGGCAACAACAGATGAAGTTTAAAGAAAATTGGAGGTTGGGGTTTGGCATGCTTGAGGAGCTATGA

Homology

[Close]

BLAST of CSPI03G46150 vs. TrEMBL
Match: A0A0A0LJX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895720 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.5e-54
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60
           MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60

Query: 61  EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM 120
           EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM
Sbjct: 61  EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM 120

Query: 121 LEEL 125
           LEEL
Sbjct: 121 LEEL 124

[Close]

BLAST of CSPI03G46150 vs. TrEMBL
Match: A0A061GKQ5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037169 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-07
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 1


Query: 1  MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60
          MVPNLDL+  A LYGSFIA +LL++ F +LI L L+ S + FS+   DL+  YS++S Y 
Sbjct: 1  MVPNLDLILAALLYGSFIACVLLVVAFVILITLLLAFSFSTFSIVFLDLYSVYSLLSRYV 60

Query: 61 EDVKAEIELGLSLIVFGVMGFGVDVVLYTK 91
            ++A +ELG  L++  +M + +   + +K
Sbjct: 61 GSIEANLELGFLLLLCSLMRYAISAAMASK 90

[Close]

BLAST of CSPI03G46150 vs. NCBI nr
Match: gi|700205193|gb|KGN60326.1| (hypothetical protein Csa_3G895720 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60
           MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60

Query: 61  EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM 120
           EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM
Sbjct: 61  EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM 120

Query: 121 LEEL 125
           LEEL
Sbjct: 121 LEEL 124

[Close]

BLAST of CSPI03G46150 vs. NCBI nr
Match: gi|590573356|ref|XP_007012098.1| (Uncharacterized protein TCM_037169 [Theobroma cacao])

HSP 1 Score: 62.4 bits (150), Expect = 6.5e-07
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 1


Query: 1  MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60
          MVPNLDL+  A LYGSFIA +LL++ F +LI L L+ S + FS+   DL+  YS++S Y 
Sbjct: 1  MVPNLDLILAALLYGSFIACVLLVVAFVILITLLLAFSFSTFSIVFLDLYSVYSLLSRYV 60

Query: 61 EDVKAEIELGLSLIVFGVMGFGVDVVLYTK 91
            ++A +ELG  L++  +M + +   + +K
Sbjct: 61 GSIEANLELGFLLLLCSLMRYAISAAMASK 90

The following BLAST results are available for this feature:

BLAST of CSPI03G46150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G46150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJX1_CUCSA	8.5e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895720 PE=4 SV=1	[more]
A0A061GKQ5_THECC	4.5e-07	42.22	Uncharacterized protein OS=Theobroma cacao GN=TCM_037169 PE=4 SV=1	[more]

BLAST of CSPI03G46150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G46150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205193\|gb\|KGN60326.1\|	1.2e-53	100.00	hypothetical protein Csa_3G895720 [Cucumis sativus]	[more]
gi\|590573356\|ref\|XP_007012098.1\|	6.5e-07	42.22	Uncharacterized protein TCM_037169 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G46150.1	CSPI03G46150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 93..113 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G46150	Cla023117	Watermelon (97103) v1	cpiwmB272
CSPI03G46150	Csa3G895720	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G46150	ClCG11G015190	Watermelon (Charleston Gray)	cpiwcgB201
CSPI03G46150	MELO3C003459.2	Melon (DHL92) v3.6.1	cpimedB209
CSPI03G46150	CsaV3_3G048600	Cucumber (Chinese Long) v3	cpicucB145
CSPI03G46150	Cla97C11G221200	Watermelon (97103) v2	cpiwmbB195
CSPI03G46150	Cucsa.312600	Cucumber (Gy14) v1	cgycpiB473
CSPI03G46150	CmaCh09G006370	Cucurbita maxima (Rimu)	cmacpiB014
CSPI03G46150	CmoCh09G006180	Cucurbita moschata (Rifu)	cmocpiB005
CSPI03G46150	Cp4.1LG06g04990	Cucurbita pepo (Zucchini)	cpecpiB778
CSPI03G46150	Carg03045	Silver-seed gourd	carcpiB0665

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G46150	Cucurbita pepo (Zucchini)	cpecpiB107
CSPI03G46150	Cucurbita pepo (Zucchini)	cpecpiB547
CSPI03G46150	Bottle gourd (USVL1VR-Ls)	cpilsiB189
CSPI03G46150	Bottle gourd (USVL1VR-Ls)	cpilsiB238
CSPI03G46150	Cucumber (Gy14) v2	cgybcpiB111
CSPI03G46150	Silver-seed gourd	carcpiB0697
CSPI03G46150	Cucumber (Chinese Long) v3	cpicucB140
CSPI03G46150	Wax gourd	cpiwgoB343
CSPI03G46150	Wild cucumber (PI 183967)	cpicpiB061
CSPI03G46150	Cucurbita maxima (Rimu)	cmacpiB182
CSPI03G46150	Cucurbita maxima (Rimu)	cmacpiB457
CSPI03G46150	Cucurbita maxima (Rimu)	cmacpiB805
CSPI03G46150	Cucurbita moschata (Rifu)	cmocpiB167
CSPI03G46150	Cucurbita moschata (Rifu)	cmocpiB445
CSPI03G46150	Melon (DHL92) v3.5.1	cpimeB198
CSPI03G46150	Melon (DHL92) v3.5.1	cpimeB215
CSPI03G46150	Watermelon (Charleston Gray)	cpiwcgB271
CSPI03G46150	Watermelon (97103) v1	cpiwmB208