CSPI03G42830 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G42830
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 36761757 .. 36762311 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATTTTCCGACCCAGACGTCGCGAAAGGATTATGCGACGCCGGCGTCGCAAAAACTTTCTGCAACCTTTGGGTCGCAAAAGCCTTATGTGATGTCTACGTCGCCGAAGCCTTCTGCGACGTTTGCATCGCAAATGCCTTTCGCGACATCTGCGCCACAAAAGTCGCCCGCGATGTATTAAGACTGTACGTGGGGAATCGACGTATTAGGATTGTGCGCGGGAAAATATTCGCTGCGTTGCAGAAAGTATCCCTGACGGACGTTTTGCGACGTTGTTGTCGACGTCGTGTGCGGCGTCGCGGTAGCTTTTCGCGACGTTGTTTTGGGTTTTCGACGACATTGGTGTGCGTTGGGGAAGAGCGGGTTTATTGTAGTGTTAGCTAATTGCATGTAAAATGAGTTCTCTCTCTAGACTTACTTGTGTTTTACTTTTTCCCTTTCCTTTTGGTGTAGATCTTTGATTACAAAAGATTGAAGAGTTCTCAGGGCCTTTCTTCTCGTTTCTTTCTTTGCTGTAATTTCTGGTTTTTACTTTGTCGTTTCTTTGAATGA

mRNA sequence

ATGCAATTTTCCGACCCAGACGTCGCGAAAGGATTATGCGACGCCGGCGTCGCAAAAACTTTCTGCAACCTTTGGGTCGCAAAAGCCTTATGTGATGTCTACGTCGCCGAAGCCTTCTGCGACGTTTGCATCGCAAATGCCTTTCGCGACATCTGCGCCACAAAAGTCGCCCGCGATGTATTAAGACTGTACGTGGGGAATCGACGTATTAGGATTGTGCGCGGGAAAATATTCGCTGCGTTGCAGAAAGTATCCCTGACGGACGTTTTGCGACGTTGTTGTCGACGTCGTGTGCGGCGTCGCGGTAGCTTTTCGCGACGTTGTTTTGGGTTTTCGACGACATTGGTGTGCGTTGGGGAAGAGCGGATCTTTGATTACAAAAGATTGAAGAGTTCTCAGGGCCTTTCTTCTCGTTTCTTTCTTTGCTGTAATTTCTGGTTTTTACTTTGTCGTTTCTTTGAATGA

Coding sequence (CDS)

ATGCAATTTTCCGACCCAGACGTCGCGAAAGGATTATGCGACGCCGGCGTCGCAAAAACTTTCTGCAACCTTTGGGTCGCAAAAGCCTTATGTGATGTCTACGTCGCCGAAGCCTTCTGCGACGTTTGCATCGCAAATGCCTTTCGCGACATCTGCGCCACAAAAGTCGCCCGCGATGTATTAAGACTGTACGTGGGGAATCGACGTATTAGGATTGTGCGCGGGAAAATATTCGCTGCGTTGCAGAAAGTATCCCTGACGGACGTTTTGCGACGTTGTTGTCGACGTCGTGTGCGGCGTCGCGGTAGCTTTTCGCGACGTTGTTTTGGGTTTTCGACGACATTGGTGTGCGTTGGGGAAGAGCGGATCTTTGATTACAAAAGATTGAAGAGTTCTCAGGGCCTTTCTTCTCGTTTCTTTCTTTGCTGTAATTTCTGGTTTTTACTTTGTCGTTTCTTTGAATGA
Homology
[Close]
BLAST of CSPI03G42830 vs. TrEMBL
Match: A0A0A0LG48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G858870 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.4e-43
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 1 

Query: 29  ALCDVYVAEAFCDVCIANAFRDICATKVARDVLRLYVGNRRIRIVRGKIFAALQKVSLTD 88
           ALCDVYV EAF DVCIANAFRDICATKVARDVLRLYVGNRRIRIVRGKIFAALQKVSLTD
Sbjct: 19  ALCDVYVVEAFRDVCIANAFRDICATKVARDVLRLYVGNRRIRIVRGKIFAALQKVSLTD 78

Query: 89  VLRRCCRRRVRRRGSFSRRCFGFSTTLVCVGEERIF 125
           VLRRCCRRRVRRRGSFSR CFGFSTTLVCVGEER++
Sbjct: 79  VLRRCCRRRVRRRGSFSRCCFGFSTTLVCVGEERVY 114

[Close]
BLAST of CSPI03G42830 vs. NCBI nr
Match: gi|700204841|gb|KGN59974.1| (hypothetical protein Csa_3G858870 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 9.1e-43
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 1 

Query: 29  ALCDVYVAEAFCDVCIANAFRDICATKVARDVLRLYVGNRRIRIVRGKIFAALQKVSLTD 88
           ALCDVYV EAF DVCIANAFRDICATKVARDVLRLYVGNRRIRIVRGKIFAALQKVSLTD
Sbjct: 19  ALCDVYVVEAFRDVCIANAFRDICATKVARDVLRLYVGNRRIRIVRGKIFAALQKVSLTD 78

Query: 89  VLRRCCRRRVRRRGSFSRRCFGFSTTLVCVGEERIF 125
           VLRRCCRRRVRRRGSFSR CFGFSTTLVCVGEER++
Sbjct: 79  VLRRCCRRRVRRRGSFSRCCFGFSTTLVCVGEERVY 114

The following BLAST results are available for this feature:
BLAST of CSPI03G42830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G42830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG48_CUCSA6.4e-4394.79Uncharacterized protein OS=Cucumis sativus GN=Csa_3G858870 PE=4 SV=1[more]
BLAST of CSPI03G42830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G42830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204841|gb|KGN59974.1|9.1e-4394.79hypothetical protein Csa_3G858870 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G42830.1CSPI03G42830.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G42830CsaV3_3G045270Cucumber (Chinese Long) v3cpicucB145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G42830Silver-seed gourdcarcpiB0116
CSPI03G42830Silver-seed gourdcarcpiB0210
CSPI03G42830Silver-seed gourdcarcpiB0443
CSPI03G42830Silver-seed gourdcarcpiB0793
CSPI03G42830Silver-seed gourdcarcpiB0984
CSPI03G42830Silver-seed gourdcarcpiB1015
CSPI03G42830Cucumber (Chinese Long) v3cpicucB135
CSPI03G42830Cucumber (Chinese Long) v3cpicucB137
CSPI03G42830Cucumber (Chinese Long) v3cpicucB179
CSPI03G42830Watermelon (97103) v2cpiwmbB175
CSPI03G42830Watermelon (97103) v2cpiwmbB199
CSPI03G42830Watermelon (97103) v2cpiwmbB222
CSPI03G42830Watermelon (97103) v2cpiwmbB247
CSPI03G42830Watermelon (97103) v2cpiwmbB256
CSPI03G42830Wax gourdcpiwgoB315
CSPI03G42830Wax gourdcpiwgoB330
CSPI03G42830Wax gourdcpiwgoB345
CSPI03G42830Wild cucumber (PI 183967)cpicpiB058
CSPI03G42830Wild cucumber (PI 183967)cpicpiB065
CSPI03G42830Wild cucumber (PI 183967)cpicpiB127
CSPI03G42830Cucumber (Gy14) v1cgycpiB177
CSPI03G42830Cucumber (Gy14) v1cgycpiB342
CSPI03G42830Cucumber (Gy14) v1cgycpiB504
CSPI03G42830Cucurbita maxima (Rimu)cmacpiB017
CSPI03G42830Cucurbita maxima (Rimu)cmacpiB185
CSPI03G42830Cucurbita maxima (Rimu)cmacpiB447
CSPI03G42830Cucurbita maxima (Rimu)cmacpiB669
CSPI03G42830Cucurbita maxima (Rimu)cmacpiB804
CSPI03G42830Cucurbita maxima (Rimu)cmacpiB875
CSPI03G42830Cucurbita moschata (Rifu)cmocpiB008
CSPI03G42830Cucurbita moschata (Rifu)cmocpiB170
CSPI03G42830Cucurbita moschata (Rifu)cmocpiB435
CSPI03G42830Cucurbita moschata (Rifu)cmocpiB661
CSPI03G42830Cucurbita moschata (Rifu)cmocpiB791
CSPI03G42830Cucurbita moschata (Rifu)cmocpiB855
CSPI03G42830Cucumber (Chinese Long) v2cpicuB110
CSPI03G42830Cucumber (Chinese Long) v2cpicuB114
CSPI03G42830Cucumber (Chinese Long) v2cpicuB120
CSPI03G42830Cucumber (Chinese Long) v2cpicuB151
CSPI03G42830Melon (DHL92) v3.5.1cpimeB195
CSPI03G42830Melon (DHL92) v3.5.1cpimeB215
CSPI03G42830Melon (DHL92) v3.5.1cpimeB253
CSPI03G42830Watermelon (Charleston Gray)cpiwcgB205
CSPI03G42830Watermelon (Charleston Gray)cpiwcgB238
CSPI03G42830Watermelon (Charleston Gray)cpiwcgB261
CSPI03G42830Watermelon (Charleston Gray)cpiwcgB272
CSPI03G42830Watermelon (97103) v1cpiwmB223
CSPI03G42830Watermelon (97103) v1cpiwmB209
CSPI03G42830Watermelon (97103) v1cpiwmB243
CSPI03G42830Watermelon (97103) v1cpiwmB256
CSPI03G42830Watermelon (97103) v1cpiwmB274
CSPI03G42830Cucurbita pepo (Zucchini)cpecpiB061
CSPI03G42830Cucurbita pepo (Zucchini)cpecpiB106
CSPI03G42830Cucurbita pepo (Zucchini)cpecpiB482
CSPI03G42830Cucurbita pepo (Zucchini)cpecpiB558
CSPI03G42830Cucurbita pepo (Zucchini)cpecpiB781
CSPI03G42830Cucurbita pepo (Zucchini)cpecpiB829
CSPI03G42830Bottle gourd (USVL1VR-Ls)cpilsiB170
CSPI03G42830Bottle gourd (USVL1VR-Ls)cpilsiB190
CSPI03G42830Bottle gourd (USVL1VR-Ls)cpilsiB239
CSPI03G42830Melon (DHL92) v3.6.1cpimedB189
CSPI03G42830Melon (DHL92) v3.6.1cpimedB209
CSPI03G42830Melon (DHL92) v3.6.1cpimedB249
CSPI03G42830Cucumber (Gy14) v2cgybcpiB067
CSPI03G42830Cucumber (Gy14) v2cgybcpiB111
CSPI03G42830Cucumber (Gy14) v2cgybcpiB265