CSPI03G42010 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G42010
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 36064408 .. 36064917 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCCCTTTCAAAGCAATGCACCCACATGTTTCCAGGTACTTCTTCAATTTCCAAAAGACCGTTGGTTCTTAGGTTATCCATTAGATTTGTGGTTGTGGTTGTGGTTGTAGTTGGGGTTGGGGTTGGGATTGAGGTTGCAGAAGAGATTGGGATTGGGATTGGGATTGGGATTGGGGTTGGGGTTGCAGCTGTAGTAGTACGGATTGAGGCTGGAGTTGCAGTTGAGGTTGTGGCTGAGATCGATATTGCAGCTGGACTTGCAGTTGTTGTGGTGGCTGGGGCTGGGGCTGAGCTTGCAGTTGCAGTTGCGGCTGTGGCTGAGGCTGGGGTTGTAGTTGGAGTTGGGGCTGGGGCTGGGGTTGGGGCTGCGGCTGCGGCTGCGGCTGAGGTTGTAGTTGAGGCTGGGCTTGCATTTGTTGTTGAGGTTGGGATTGCATTTGCAGTTGTGGTTGTCCAGCAGACCACCGATTCCTACCCCGGCCTCTTCGAGCACCGGCAATACTAG

mRNA sequence

ATGGCACCCCTTTCAAAGCAATGCACCCACATGTTTCCAGGTACTTCTTCAATTTCCAAAAGACCGTTGGTTCTTAGGTTATCCATTAGATTTGTGGTTGTGGTTGTGGTTGTAGTTGGGGTTGGGGTTGGGATTGAGGTTGCAGAAGAGATTGGGATTGGGATTGGGATTGGGATTGGGGTTGGGGTTGCAGCTGTAGTAGTACGGATTGAGGCTGGAGTTGCAGTTGAGGTTGTGGCTGAGATCGATATTGCAGCTGGACTTGCAGTTGTTGTGGTGGCTGGGGCTGGGGCTGAGCTTGCAGTTGCAGTTGCGGCTGTGGCTGAGGCTGGGGTTGTAGTTGGAGTTGGGGCTGGGGCTGGGGTTGGGGCTGCGGCTGCGGCTGCGGCTGAGGTTGTAGTTGAGGCTGGGCTTGCATTTGTTGTTGAGGTTGGGATTGCATTTGCAGTTGTGGTTGTCCAGCAGACCACCGATTCCTACCCCGGCCTCTTCGAGCACCGGCAATACTAG

Coding sequence (CDS)

ATGGCACCCCTTTCAAAGCAATGCACCCACATGTTTCCAGGTACTTCTTCAATTTCCAAAAGACCGTTGGTTCTTAGGTTATCCATTAGATTTGTGGTTGTGGTTGTGGTTGTAGTTGGGGTTGGGGTTGGGATTGAGGTTGCAGAAGAGATTGGGATTGGGATTGGGATTGGGATTGGGGTTGGGGTTGCAGCTGTAGTAGTACGGATTGAGGCTGGAGTTGCAGTTGAGGTTGTGGCTGAGATCGATATTGCAGCTGGACTTGCAGTTGTTGTGGTGGCTGGGGCTGGGGCTGAGCTTGCAGTTGCAGTTGCGGCTGTGGCTGAGGCTGGGGTTGTAGTTGGAGTTGGGGCTGGGGCTGGGGTTGGGGCTGCGGCTGCGGCTGCGGCTGAGGTTGTAGTTGAGGCTGGGCTTGCATTTGTTGTTGAGGTTGGGATTGCATTTGCAGTTGTGGTTGTCCAGCAGACCACCGATTCCTACCCCGGCCTCTTCGAGCACCGGCAATACTAG
Homology
[Close]
BLAST of CSPI03G42010 vs. TrEMBL
Match: A0A0A0LDL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851840 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.0e-61
Identity = 160/171 (93.57%), Postives = 161/171 (94.15%), Query Frame = 1 

Query: 1   MAPLSKQCTHMFPGTSSISKRPLVLRLSIRFVVVVVVVVGVGVGIEVAEEIGIGIGIGIG 60
           MAPLSKQCTHMFPGTSSISKRPLVLRLSIRFVVVVVVVVGVGVGIEVAEEIGI    GIG
Sbjct: 1   MAPLSKQCTHMFPGTSSISKRPLVLRLSIRFVVVVVVVVGVGVGIEVAEEIGI----GIG 60

Query: 61  VGVAAVVVRIEAGVAVEVVAEIDIAAGLAVVVVAGAGAELAVAVAAVAEAGVVVGVGAGA 120
           VGVAAVVVRIEAGVAVEVVAEIDIAAGLAVVVVAGAGAELAVAVAAVAEAGVVVGVGAGA
Sbjct: 61  VGVAAVVVRIEAGVAVEVVAEIDIAAGLAVVVVAGAGAELAVAVAAVAEAGVVVGVGAGA 120

Query: 121 GVGAAA--AAAAEVVVEAGLAFVVEVGIAFAVVVVQQTTDSYPGLFEHRQY 170
           GVG     AAAAEVVV AGLAFVVEVGIAFA+VVVQQTTDSYPGLFEHRQY
Sbjct: 121 GVGVGVGPAAAAEVVVGAGLAFVVEVGIAFAIVVVQQTTDSYPGLFEHRQY 167

[Close]
BLAST of CSPI03G42010 vs. NCBI nr
Match: gi|700204750|gb|KGN59883.1| (hypothetical protein Csa_3G851840 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 2.8e-61
Identity = 160/171 (93.57%), Postives = 161/171 (94.15%), Query Frame = 1 

Query: 1   MAPLSKQCTHMFPGTSSISKRPLVLRLSIRFVVVVVVVVGVGVGIEVAEEIGIGIGIGIG 60
           MAPLSKQCTHMFPGTSSISKRPLVLRLSIRFVVVVVVVVGVGVGIEVAEEIGI    GIG
Sbjct: 1   MAPLSKQCTHMFPGTSSISKRPLVLRLSIRFVVVVVVVVGVGVGIEVAEEIGI----GIG 60

Query: 61  VGVAAVVVRIEAGVAVEVVAEIDIAAGLAVVVVAGAGAELAVAVAAVAEAGVVVGVGAGA 120
           VGVAAVVVRIEAGVAVEVVAEIDIAAGLAVVVVAGAGAELAVAVAAVAEAGVVVGVGAGA
Sbjct: 61  VGVAAVVVRIEAGVAVEVVAEIDIAAGLAVVVVAGAGAELAVAVAAVAEAGVVVGVGAGA 120

Query: 121 GVGAAA--AAAAEVVVEAGLAFVVEVGIAFAVVVVQQTTDSYPGLFEHRQY 170
           GVG     AAAAEVVV AGLAFVVEVGIAFA+VVVQQTTDSYPGLFEHRQY
Sbjct: 121 GVGVGVGPAAAAEVVVGAGLAFVVEVGIAFAIVVVQQTTDSYPGLFEHRQY 167

The following BLAST results are available for this feature:
BLAST of CSPI03G42010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G42010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDL9_CUCSA2.0e-6193.57Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851840 PE=4 SV=1[more]
BLAST of CSPI03G42010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G42010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204750|gb|KGN59883.1|2.8e-6193.57hypothetical protein Csa_3G851840 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G42010.1CSPI03G42010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G42010Csa3G851840Cucumber (Chinese Long) v2cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G42010Melon (DHL92) v3.6.1cpimedB209
CSPI03G42010Cucumber (Gy14) v2cgybcpiB111
CSPI03G42010Silver-seed gourdcarcpiB0941
CSPI03G42010Cucumber (Chinese Long) v3cpicucB145
CSPI03G42010Watermelon (97103) v2cpiwmbB197
CSPI03G42010Wax gourdcpiwgoB344
CSPI03G42010Wild cucumber (PI 183967)cpicpiB018
CSPI03G42010Cucumber (Gy14) v1cgycpiB174
CSPI03G42010Cucumber (Gy14) v1cgycpiB504
CSPI03G42010Cucurbita maxima (Rimu)cmacpiB018
CSPI03G42010Cucurbita maxima (Rimu)cmacpiB452
CSPI03G42010Cucurbita moschata (Rifu)cmocpiB009
CSPI03G42010Cucurbita moschata (Rifu)cmocpiB439
CSPI03G42010Melon (DHL92) v3.5.1cpimeB215
CSPI03G42010Watermelon (Charleston Gray)cpiwcgB203
CSPI03G42010Watermelon (Charleston Gray)cpiwcgB223
CSPI03G42010Watermelon (97103) v1cpiwmB275
CSPI03G42010Cucurbita pepo (Zucchini)cpecpiB562
CSPI03G42010Cucurbita pepo (Zucchini)cpecpiB782
CSPI03G42010Bottle gourd (USVL1VR-Ls)cpilsiB191