CSPI03G41850 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G41850
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 35932885 .. 35933352 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGTCAGTGTGCTTTAACTGTGGCGGTTTGGTTTAGACAGACGTACGGTGGAGTGAGGCGGAGCTTGGAAGTGGTGGCGGAGATGGTGGAGGAGAGGAAAGAAATGATTATTGGATTCTGTTTATCGTCGGCAATAGGAATAGCGACAGTGTCTGTTCAAACCAAAACCAAGCTTCCAAATTCATTTCAGTTTCTATCCATTGCTGTTTTGATTTGTTTTTTGTCTGTTGGATTTGCAAGGATGATCAGCTCCATTTTCAAAACACTCTCAAAGATCCTGTATTGTTTTGGTGGTTTCTTATGTGCCACATGCTGTTTCATTGCCACAGCCATCCCATATGACACACATTTTCATATCATTGTTATTGTTCTTTACTCAATCTTTTGTATCATCTTCGTCATGCTCATCTCCATCACTCACAACCCTTCTTCACCTTCCTCCTCCCATACCCTTCCTCTCTAA

mRNA sequence

ATGTTGGGTCAGTGTGCTTTAACTGTGGCGGTTTGGTTTAGACAGACGTACGGTGGAGTGAGGCGGAGCTTGGAAGTGGTGGCGGAGATGGTGGAGGAGAGGAAAGAAATGATTATTGGATTCTGTTTATCGTCGGCAATAGGAATAGCGACAGTGTCTGTTCAAACCAAAACCAAGCTTCCAAATTCATTTCAGTTTCTATCCATTGCTGTTTTGATTTGTTTTTTGTCTGTTGGATTTGCAAGGATGATCAGCTCCATTTTCAAAACACTCTCAAAGATCCTGTATTGTTTTGGTGGTTTCTTATGTGCCACATGCTGTTTCATTGCCACAGCCATCCCATATGACACACATTTTCATATCATTGTTATTGTTCTTTACTCAATCTTTTGTATCATCTTCGTCATGCTCATCTCCATCACTCACAACCCTTCTTCACCTTCCTCCTCCCATACCCTTCCTCTCTAA

Coding sequence (CDS)

ATGTTGGGTCAGTGTGCTTTAACTGTGGCGGTTTGGTTTAGACAGACGTACGGTGGAGTGAGGCGGAGCTTGGAAGTGGTGGCGGAGATGGTGGAGGAGAGGAAAGAAATGATTATTGGATTCTGTTTATCGTCGGCAATAGGAATAGCGACAGTGTCTGTTCAAACCAAAACCAAGCTTCCAAATTCATTTCAGTTTCTATCCATTGCTGTTTTGATTTGTTTTTTGTCTGTTGGATTTGCAAGGATGATCAGCTCCATTTTCAAAACACTCTCAAAGATCCTGTATTGTTTTGGTGGTTTCTTATGTGCCACATGCTGTTTCATTGCCACAGCCATCCCATATGACACACATTTTCATATCATTGTTATTGTTCTTTACTCAATCTTTTGTATCATCTTCGTCATGCTCATCTCCATCACTCACAACCCTTCTTCACCTTCCTCCTCCCATACCCTTCCTCTCTAA

Homology

[Close]

BLAST of CSPI03G41850 vs. TrEMBL
Match: A0A0A0LCY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.6e-78
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MLGQCALTVAVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKL 60
           MLGQCALTVAVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKL
Sbjct: 1   MLGQCALTVAVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKL 60

Query: 61  PNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFH 120
           PNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFH
Sbjct: 61  PNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFH 120

Query: 121 IIVIVLYSIFCIIFVMLISITHNPSSPSSSHTLPL 156
           IIVIVLYSIFCIIFVMLISITHNPSSPSSSHTLPL
Sbjct: 121 IIVIVLYSIFCIIFVMLISITHNPSSPSSSHTLPL 155

[Close]

BLAST of CSPI03G41850 vs. TrEMBL
Match: A0A0A0LQP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-50
Identity = 116/158 (73.42%), Postives = 129/158 (81.65%), Query Frame = 1


Query: 1   MLGQCALTVAV--WFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT 60
           MLG CAL VAV  WFRQ Y G RRSLE+VAE VEERKE IIG C+SSAIGI T SVQ KT
Sbjct: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60

Query: 61  KLPNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY-DT 120
           KLPNSFQ LS+ +L+CF+SV FARMI S+F+TLS+ILYC G F+CAT CFIATAI Y D 
Sbjct: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120

Query: 121 HFHIIVIVLYSIF---CIIFVMLISITHN-PSSPSSSH 152
           HFH IVIVLYSIF   CIIF++ ISITHN PSSPSSS+
Sbjct: 121 HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSN 158

[Close]

BLAST of CSPI03G41850 vs. TrEMBL
Match: A0A0A0LSX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.2e-43
Identity = 101/146 (69.18%), Postives = 110/146 (75.34%), Query Frame = 1


Query: 10  AVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSI 69
           AVWFRQ YGGVRRS EV AEMVEE K+MIIGFC+SSAIGIATVSV  KT+LPNSFQ LSI
Sbjct: 9   AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSI 68

Query: 70  AVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSI 129
           AVL+CF+SV FARMI+SIF+TLSKILYC GG L A+ CFIATAIPY + F          
Sbjct: 69  AVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF---------- 128

Query: 130 FCIIFVMLISITHNPSSPSSSHTLPL 156
                     ITHNPS PSSS TLPL
Sbjct: 129 ----------ITHNPSPPSSSDTLPL 134

[Close]

BLAST of CSPI03G41850 vs. TrEMBL
Match: A0A0A0LQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.3e-31
Identity = 85/135 (62.96%), Postives = 101/135 (74.81%), Query Frame = 1


Query: 17  YGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT--KLPNSFQFLSIAVLIC 76
           +GG  R L +VAEMVEE KEMI+  C+SSAIGIATVSVQ +T  +LP +FQFLSI VL+C
Sbjct: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91

Query: 77  FLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCIIF 136
           F  VGFA+M   IFKT+SKILYC GGFL  T  FIATAIP+  +F II+ +LY +FC IF
Sbjct: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIF 151

Query: 137 VMLISITHNPSSPSS 150
            MLI+  HN   PSS
Sbjct: 152 -MLITTIHN-QQPSS 162

[Close]

BLAST of CSPI03G41850 vs. TrEMBL
Match: A0A0A0LEV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.8e-20
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 1


Query: 24  LEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARM 83
           +EVVA+MVEE+K  IIGF  +    IA +SVQ K KLP+SF+F+SI  L+C L    A +
Sbjct: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69

Query: 84  ISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCIIFVMLISITHN 143
           I   FKT +K+LY  G F C T   IA AIP   +FH+++I+L+ I CI  V+L+S T +
Sbjct: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCS 129

Query: 144 PSSPSSSHTLPL 156
           P + S+++ LPL
Sbjct: 130 PPN-STTNDLPL 140

[Close]

BLAST of CSPI03G41850 vs. NCBI nr
Match: gi|700204732|gb|KGN59865.1| (hypothetical protein Csa_3G851175 [Cucumis sativus])

HSP 1 Score: 298.9 bits (764), Expect = 5.2e-78
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MLGQCALTVAVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKL 60
           MLGQCALTVAVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKL
Sbjct: 1   MLGQCALTVAVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKL 60

Query: 61  PNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFH 120
           PNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFH
Sbjct: 61  PNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFH 120

Query: 121 IIVIVLYSIFCIIFVMLISITHNPSSPSSSHTLPL 156
           IIVIVLYSIFCIIFVMLISITHNPSSPSSSHTLPL
Sbjct: 121 IIVIVLYSIFCIIFVMLISITHNPSSPSSSHTLPL 155

[Close]

BLAST of CSPI03G41850 vs. NCBI nr
Match: gi|700208992|gb|KGN64088.1| (hypothetical protein Csa_1G040510 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 3.5e-50
Identity = 116/158 (73.42%), Postives = 129/158 (81.65%), Query Frame = 1


Query: 1   MLGQCALTVAV--WFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT 60
           MLG CAL VAV  WFRQ Y G RRSLE+VAE VEERKE IIG C+SSAIGI T SVQ KT
Sbjct: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60

Query: 61  KLPNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY-DT 120
           KLPNSFQ LS+ +L+CF+SV FARMI S+F+TLS+ILYC G F+CAT CFIATAI Y D 
Sbjct: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120

Query: 121 HFHIIVIVLYSIF---CIIFVMLISITHN-PSSPSSSH 152
           HFH IVIVLYSIF   CIIF++ ISITHN PSSPSSS+
Sbjct: 121 HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSN 158

[Close]

BLAST of CSPI03G41850 vs. NCBI nr
Match: gi|700208993|gb|KGN64089.1| (hypothetical protein Csa_1G040520 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 3.2e-43
Identity = 101/146 (69.18%), Postives = 110/146 (75.34%), Query Frame = 1


Query: 10  AVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSI 69
           AVWFRQ YGGVRRS EV AEMVEE K+MIIGFC+SSAIGIATVSV  KT+LPNSFQ LSI
Sbjct: 9   AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSI 68

Query: 70  AVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSI 129
           AVL+CF+SV FARMI+SIF+TLSKILYC GG L A+ CFIATAIPY + F          
Sbjct: 69  AVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF---------- 128

Query: 130 FCIIFVMLISITHNPSSPSSSHTLPL 156
                     ITHNPS PSSS TLPL
Sbjct: 129 ----------ITHNPSPPSSSDTLPL 134

[Close]

BLAST of CSPI03G41850 vs. NCBI nr
Match: gi|700208994|gb|KGN64090.1| (hypothetical protein Csa_1G041520 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 6.2e-31
Identity = 85/135 (62.96%), Postives = 101/135 (74.81%), Query Frame = 1


Query: 17  YGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT--KLPNSFQFLSIAVLIC 76
           +GG  R L +VAEMVEE KEMI+  C+SSAIGIATVSVQ +T  +LP +FQFLSI VL+C
Sbjct: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91

Query: 77  FLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCIIF 136
           F  VGFA+M   IFKT+SKILYC GGFL  T  FIATAIP+  +F II+ +LY +FC IF
Sbjct: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIF 151

Query: 137 VMLISITHNPSSPSS 150
            MLI+  HN   PSS
Sbjct: 152 -MLITTIHN-QQPSS 162

[Close]

BLAST of CSPI03G41850 vs. NCBI nr
Match: gi|700205416|gb|KGN60535.1| (hypothetical protein Csa_2G000430 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 8.4e-20
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 1


Query: 24  LEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARM 83
           +EVVA+MVEE+K  IIGF  +    IA +SVQ K KLP+SF+F+SI  L+C L    A +
Sbjct: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69

Query: 84  ISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCIIFVMLISITHN 143
           I   FKT +K+LY  G F C T   IA AIP   +FH+++I+L+ I CI  V+L+S T +
Sbjct: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCS 129

Query: 144 PSSPSSSHTLPL 156
           P + S+++ LPL
Sbjct: 130 PPN-STTNDLPL 140

The following BLAST results are available for this feature:

BLAST of CSPI03G41850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G41850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCY2_CUCSA	3.6e-78	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851175 PE=4 SV=1	[more]
A0A0A0LQP5_CUCSA	2.4e-50	73.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040510 PE=4 SV=1	[more]
A0A0A0LSX4_CUCSA	2.2e-43	69.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040520 PE=4 SV=1	[more]
A0A0A0LQB6_CUCSA	4.3e-31	62.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G041520 PE=4 SV=1	[more]
A0A0A0LEV1_CUCSA	5.8e-20	47.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000430 PE=4 SV=1	[more]

BLAST of CSPI03G41850 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G41850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204732\|gb\|KGN59865.1\|	5.2e-78	100.00	hypothetical protein Csa_3G851175 [Cucumis sativus]	[more]
gi\|700208992\|gb\|KGN64088.1\|	3.5e-50	73.42	hypothetical protein Csa_1G040510 [Cucumis sativus]	[more]
gi\|700208993\|gb\|KGN64089.1\|	3.2e-43	69.18	hypothetical protein Csa_1G040520 [Cucumis sativus]	[more]
gi\|700208994\|gb\|KGN64090.1\|	6.2e-31	62.96	hypothetical protein Csa_1G041520 [Cucumis sativus]	[more]
gi\|700205416\|gb\|KGN60535.1\|	8.4e-20	47.73	hypothetical protein Csa_2G000430 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G41850.1	CSPI03G41850.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G41850	CsaV3_3G044280	Cucumber (Chinese Long) v3	cpicucB145

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G41850	Cucurbita maxima (Rimu)	cmacpiB018
CSPI03G41850	Cucurbita maxima (Rimu)	cmacpiB452
CSPI03G41850	Cucurbita moschata (Rifu)	cmocpiB009
CSPI03G41850	Cucurbita moschata (Rifu)	cmocpiB439
CSPI03G41850	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G41850	Melon (DHL92) v3.5.1	cpimeB215
CSPI03G41850	Watermelon (Charleston Gray)	cpiwcgB203
CSPI03G41850	Watermelon (Charleston Gray)	cpiwcgB223
CSPI03G41850	Watermelon (97103) v1	cpiwmB275
CSPI03G41850	Cucurbita pepo (Zucchini)	cpecpiB562
CSPI03G41850	Cucurbita pepo (Zucchini)	cpecpiB604
CSPI03G41850	Cucurbita pepo (Zucchini)	cpecpiB782
CSPI03G41850	Bottle gourd (USVL1VR-Ls)	cpilsiB191
CSPI03G41850	Melon (DHL92) v3.6.1	cpimedB209
CSPI03G41850	Cucumber (Gy14) v2	cgybcpiB111
CSPI03G41850	Silver-seed gourd	carcpiB0129
CSPI03G41850	Silver-seed gourd	carcpiB0941
CSPI03G41850	Silver-seed gourd	carcpiB1052
CSPI03G41850	Watermelon (97103) v2	cpiwmbB197
CSPI03G41850	Wax gourd	cpiwgoB344
CSPI03G41850	Wild cucumber (PI 183967)	cpicpiB018
CSPI03G41850	Cucumber (Gy14) v1	cgycpiB174
CSPI03G41850	Cucumber (Gy14) v1	cgycpiB504