CSPI03G41800 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G41800
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	ACT11D09.5
Location	Chr3 : 35886597 .. 35887204 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAGACTTCTGTGTCCTTTTCCTTTGGGTTCCGTCATCATTTGTCCAATAGGAAAATGACATAAGTGACCTCTCTTCTTTCTTTGCTCGAGGGCTGTGATTTTAGCGTGGGAAGAATGGATGTTCATATTTGGAGCCCTAATCCTAGCCAGGGTTTCTCGTGTAACTCATTGTTCAATCTGTTGGATCCTCCCCAATTAGGGAGTTTGTTTTTTATGGTCTGGAGGATTAAGAATTTGAAGAAAGTTAGGTTTTTTATTTGGTTTGTTTTGATAAGTTGTGTGAACACTATGGATATTTTGGCAAGGAAAAAGTCCTCGTTTGTTGGGCCTTTTTGCTGTATTCTTTCCGGAAGGCGGAGGAAGACCTGTATAATCTTTTTTGGGATTGCAAGTTCGTGCGGGCTGTGTGGAGTTCTTTTTTTGTAGGAGTTTGATGTTAGCTTCGCTGGTCAAAGAAGTATTTGTGTGTTGATCAAGAAATTCCTCCTCCATCCGCTTTTCAAAAAGGCTGTTTTTTGTCGCTTGCTAGCGTGTATTTGGAATATTTGAGGGAGAGGAATGATAAGGTATTTAGAGGAAGAGATAGGAGCCCTTATGATGTTTGGT

mRNA sequence

ATGGATGTTCATATTTGGAGCCCTAATCCTAGCCAGGGTTTCTCGTGTAACTCATTGTTCAATCTGTTGGATCCTCCCCAATTAGGGAGTTTGTTTTTTATGGTCTGGAGGATTAAGAATTTGAAGAAAGTTAGGTTTTTTATTTGGTTTGTTTTGATAAGTTGTGTGAACACTATGGATATTTTGGCAAGGAAAAAGTCCTCGTTTGTTGGGCCTTTTTGCTGTATTCTTTCCGGAAGGCGGAGGAAGACCTGTATAATCTTTTTTGGGATTGCAAGTTCGTGCGGGCTGTGTGGAGTTCTTTTTTTGTAG

Coding sequence (CDS)

ATGGATGTTCATATTTGGAGCCCTAATCCTAGCCAGGGTTTCTCGTGTAACTCATTGTTCAATCTGTTGGATCCTCCCCAATTAGGGAGTTTGTTTTTTATGGTCTGGAGGATTAAGAATTTGAAGAAAGTTAGGTTTTTTATTTGGTTTGTTTTGATAAGTTGTGTGAACACTATGGATATTTTGGCAAGGAAAAAGTCCTCGTTTGTTGGGCCTTTTTGCTGTATTCTTTCCGGAAGGCGGAGGAAGACCTGTATAATCTTTTTTGGGATTGCAAGTTCGTGCGGGCTGTGTGGAGTTCTTTTTTTGTAG

Homology

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BLAST of CSPI03G41800 vs. TrEMBL
Match: Q6E437_CUCME (ACT11D09.5 OS=Cucumis melo GN=ACT11D0.5 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-06
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 2   DVHIWSPNPSQGFSCNSLFNLLDPPQLGSLFFMVWRIKNLKKVRF 47
           D H+W PNPS+GFSC+SLF LLDP    S+F +V R K LKKVRF
Sbjct: 102 DAHVWIPNPSRGFSCDSLFWLLDPTP-PSIFDVVMRTKVLKKVRF 145

[Close]

BLAST of CSPI03G41800 vs. NCBI nr
Match: gi|659129548|ref|XP_008464727.1| (PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 9.6e-12
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 2   DVHIWSPNPSQGFSCNSLFNLLDPPQLGSLFF-MVWRIKNLKKVRFFIWFVLISCVNTMD 61
           D+H+W+PNPS GFS  SL  LLDP     L F +VW     KKV FFIW VL+  VN +D
Sbjct: 203 DIHVWNPNPSWGFSMFSL--LLDPAPTKELVFDVVWSTNVPKKVMFFIWQVLLDQVNIVD 262

Query: 62  ILARKKSSFVGPFCCIL 78
            L R+++S VG FCC+L
Sbjct: 263 RLVRRRTSLVGLFCCML 277

[Close]

BLAST of CSPI03G41800 vs. NCBI nr
Match: gi|46095228|gb|AAS80151.1| (ACT11D09.5 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 6.0e-06
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 2   DVHIWSPNPSQGFSCNSLFNLLDPPQLGSLFFMVWRIKNLKKVRF 47
           D H+W PNPS+GFSC+SLF LLDP    S+F +V R K LKKVRF
Sbjct: 102 DAHVWIPNPSRGFSCDSLFWLLDPTP-PSIFDVVMRTKVLKKVRF 145

The following BLAST results are available for this feature:

BLAST of CSPI03G41800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G41800 vs. TrEMBL


Match Name	E-value	Identity	Description
Q6E437_CUCME	4.2e-06	64.44	ACT11D09.5 OS=Cucumis melo GN=ACT11D0.5 PE=4 SV=1	[more]

BLAST of CSPI03G41800 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G41800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129548\|ref\|XP_008464727.1\|	9.6e-12	53.25	PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo]	[more]
gi\|46095228\|gb\|AAS80151.1\|	6.0e-06	64.44	ACT11D09.5 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G41800.1	CSPI03G41800.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G41800	Wax gourd	cpiwgoB344
CSPI03G41800	Wild cucumber (PI 183967)	cpicpiB018
CSPI03G41800	Cucumber (Gy14) v1	cgycpiB174
CSPI03G41800	Cucumber (Gy14) v1	cgycpiB504
CSPI03G41800	Cucurbita maxima (Rimu)	cmacpiB018
CSPI03G41800	Cucurbita maxima (Rimu)	cmacpiB452
CSPI03G41800	Cucurbita moschata (Rifu)	cmocpiB009
CSPI03G41800	Cucurbita moschata (Rifu)	cmocpiB439
CSPI03G41800	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G41800	Melon (DHL92) v3.5.1	cpimeB215
CSPI03G41800	Watermelon (Charleston Gray)	cpiwcgB223
CSPI03G41800	Cucurbita pepo (Zucchini)	cpecpiB562
CSPI03G41800	Cucurbita pepo (Zucchini)	cpecpiB604
CSPI03G41800	Cucurbita pepo (Zucchini)	cpecpiB782
CSPI03G41800	Bottle gourd (USVL1VR-Ls)	cpilsiB191
CSPI03G41800	Melon (DHL92) v3.6.1	cpimedB209
CSPI03G41800	Cucumber (Gy14) v2	cgybcpiB111
CSPI03G41800	Silver-seed gourd	carcpiB0129
CSPI03G41800	Silver-seed gourd	carcpiB0941
CSPI03G41800	Silver-seed gourd	carcpiB1052
CSPI03G41800	Cucumber (Chinese Long) v3	cpicucB145