CSPI03G41530 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G41530
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 35639098 .. 35639377 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCACCCTCCAACACTCTCCCATTCGCAGGGCCCCACGTGGGATCCACTCGCCGTTACCCATCACCCTCACTGTCCCATCACCCACCATTCATCACCTATCACACGCCGTTAACTCTTTAGGGTTTAGCGCGTGAGTCACTTACTGCCCTCCGATCACCTTCAACTCACATAACCGTGACAGATTTACCTCACCAGACGACGGCGTTTTTGGCGGCTGACGTCCTCGGCTTCCCTGCCACCTCTCCCGGATCCTGTCGCACTTTTCGAACCTCCTAA

mRNA sequence

ATGTTCACCCTCCAACACTCTCCCATTCGCAGGGCCCCACGTGGGATCCACTCGCCGTTACCCATCACCCTCACTGGTTTAGCGCGTGAGTCACTTACTGCCCTCCGATCACCTTCAACTCACATAACCGTGACAGATTTACCTCACCAGACGACGGCGTTTTTGGCGGCTGACGTCCTCGGCTTCCCTGCCACCTCTCCCGGATCCTGTCGCACTTTTCGAACCTCCTAA

Coding sequence (CDS)

ATGTTCACCCTCCAACACTCTCCCATTCGCAGGGCCCCACGTGGGATCCACTCGCCGTTACCCATCACCCTCACTGGTTTAGCGCGTGAGTCACTTACTGCCCTCCGATCACCTTCAACTCACATAACCGTGACAGATTTACCTCACCAGACGACGGCGTTTTTGGCGGCTGACGTCCTCGGCTTCCCTGCCACCTCTCCCGGATCCTGTCGCACTTTTCGAACCTCCTAA
Homology
[Close]
BLAST of CSPI03G41530 vs. TrEMBL
Match: A0A0A0LIF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848890 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.1e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MFTLQHSPIRRAPRGIHSPLPITLTGLARESLTALRSPSTHITVTDLPHQTTAFLAADVL 60
          MFTLQHSPIRRAPRGIHSPLPITLTGLARESLTALRSPSTHITVTDLPHQTTAFLAADVL
Sbjct: 1  MFTLQHSPIRRAPRGIHSPLPITLTGLARESLTALRSPSTHITVTDLPHQTTAFLAADVL 60

Query: 61 GFPATSPGSCRTFRTS 77
          GFPATSPGSCRTFRTS
Sbjct: 61 GFPATSPGSCRTFRTS 76

[Close]
BLAST of CSPI03G41530 vs. NCBI nr
Match: gi|700204698|gb|KGN59831.1| (hypothetical protein Csa_3G848890 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MFTLQHSPIRRAPRGIHSPLPITLTGLARESLTALRSPSTHITVTDLPHQTTAFLAADVL 60
          MFTLQHSPIRRAPRGIHSPLPITLTGLARESLTALRSPSTHITVTDLPHQTTAFLAADVL
Sbjct: 1  MFTLQHSPIRRAPRGIHSPLPITLTGLARESLTALRSPSTHITVTDLPHQTTAFLAADVL 60

Query: 61 GFPATSPGSCRTFRTS 77
          GFPATSPGSCRTFRTS
Sbjct: 61 GFPATSPGSCRTFRTS 76

The following BLAST results are available for this feature:
BLAST of CSPI03G41530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G41530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIF7_CUCSA7.1e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848890 PE=4 SV=1[more]
BLAST of CSPI03G41530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G41530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204698|gb|KGN59831.1|1.0e-34100.00hypothetical protein Csa_3G848890 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G41530.1CSPI03G41530.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G41530Csa3G848890Cucumber (Chinese Long) v2cpicuB120
CSPI03G41530CsaV3_3G043970Cucumber (Chinese Long) v3cpicucB145
CSPI03G41530CsGy3G038990Cucumber (Gy14) v2cgybcpiB111
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G41530Cucumber (Chinese Long) v3cpicucB192
CSPI03G41530Watermelon (97103) v2cpiwmbB249
CSPI03G41530Watermelon (97103) v2cpiwmbB267
CSPI03G41530Wax gourdcpiwgoB275
CSPI03G41530Wax gourdcpiwgoB347
CSPI03G41530Wild cucumber (PI 183967)cpicpiB143
CSPI03G41530Cucumber (Gy14) v1cgycpiB504
CSPI03G41530Cucumber (Gy14) v1cgycpiB532
CSPI03G41530Cucurbita maxima (Rimu)cmacpiB246
CSPI03G41530Cucurbita maxima (Rimu)cmacpiB362
CSPI03G41530Cucurbita maxima (Rimu)cmacpiB449
CSPI03G41530Cucurbita maxima (Rimu)cmacpiB909
CSPI03G41530Cucurbita moschata (Rifu)cmocpiB233
CSPI03G41530Cucurbita moschata (Rifu)cmocpiB354
CSPI03G41530Cucurbita moschata (Rifu)cmocpiB437
CSPI03G41530Cucurbita moschata (Rifu)cmocpiB888
CSPI03G41530Cucumber (Chinese Long) v2cpicuB163
CSPI03G41530Melon (DHL92) v3.5.1cpimeB182
CSPI03G41530Melon (DHL92) v3.5.1cpimeB220
CSPI03G41530Watermelon (Charleston Gray)cpiwcgB186
CSPI03G41530Watermelon (Charleston Gray)cpiwcgB263
CSPI03G41530Watermelon (97103) v1cpiwmB215
CSPI03G41530Watermelon (97103) v1cpiwmB190
CSPI03G41530Cucurbita pepo (Zucchini)cpecpiB137
CSPI03G41530Cucurbita pepo (Zucchini)cpecpiB308
CSPI03G41530Cucurbita pepo (Zucchini)cpecpiB560
CSPI03G41530Cucurbita pepo (Zucchini)cpecpiB604
CSPI03G41530Bottle gourd (USVL1VR-Ls)cpilsiB173
CSPI03G41530Bottle gourd (USVL1VR-Ls)cpilsiB233
CSPI03G41530Melon (DHL92) v3.6.1cpimedB175
CSPI03G41530Melon (DHL92) v3.6.1cpimedB214
CSPI03G41530Cucumber (Gy14) v2cgybcpiB314
CSPI03G41530Silver-seed gourdcarcpiB0129
CSPI03G41530Silver-seed gourdcarcpiB0229
CSPI03G41530Silver-seed gourdcarcpiB1061