CSPI03G41380 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G41380
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 35491377 .. 35491610 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGGCCCCCGAAGGAGCCGTTCCCAGTCCGTCCCCCGGTCGGCACGCGACGACCTGCTCTCGCCGCGGAAGCAGCTCGAGCAGTCCACCAACAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCTGACTTCCCTTACCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGA

mRNA sequence

ATGCATGGCCCCCGAAGGAGCCGTTCCCAGTCCGTCCCCCGGTCGGCACGCGACGACCTGCTCTCGCCGCGGAAGCAGCTCGAGCAGTCCACCAACAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCTGACTTCCCTTACCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGA

Coding sequence (CDS)

ATGCATGGCCCCCGAAGGAGCCGTTCCCAGTCCGTCCCCCGGTCGGCACGCGACGACCTGCTCTCGCCGCGGAAGCAGCTCGAGCAGTCCACCAACAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCTGACTTCCCTTACCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGA
Homology
[Close]
BLAST of CSPI03G41380 vs. TrEMBL
Match: A0A0A0LCS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848246 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.4e-35
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 1 

Query: 1  MHGPRRSRSQSVPRSARDDLLSPRKQLEQSTNSRRVRDWDPRAQPSEPILFPRLRIHFAD 60
          MHGPRRSRSQSVP  ARDDLLSPRKQ+EQSTNSRRVRDWDPRAQPSEPILFPRLRIHFAD
Sbjct: 1  MHGPRRSRSQSVPWPARDDLLSPRKQVEQSTNSRRVRDWDPRAQPSEPILFPRLRIHFAD 60

Query: 61 FPYLHCSIDQRLFTLET 78
          FPYLHCSIDQRLFTLET
Sbjct: 61 FPYLHCSIDQRLFTLET 77

[Close]
BLAST of CSPI03G41380 vs. TrEMBL
Match: A0A0R0GRW0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G015400 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.8e-31
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 4   PRRSRSQSVPRSARDDLLSPRKQLEQSTNSRRVRDWDPRAQPSEPILFPRLRIHFADFPY 63
           PRR+RSQSVPR ARDD LSPRKQLEQST+SRRVRDWDPRAQPSEPILFPRLRIHFADFP 
Sbjct: 124 PRRARSQSVPRPARDDPLSPRKQLEQSTDSRRVRDWDPRAQPSEPILFPRLRIHFADFPC 183

Query: 64  LHCSIDQRLFTLET 78
           LHCSIDQRLFTLET
Sbjct: 184 LHCSIDQRLFTLET 197

[Close]
BLAST of CSPI03G41380 vs. TrEMBL
Match: A0A0R0GHB5_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_13G021700 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 4   PRRSRSQSVPRSARDDLLSPRKQLEQSTNSRRVRDWDPRAQPSEPILFPR 54
           PRR+RSQSVPR ARDD LSPRKQLEQST+SRRVRDWDPRAQPSEPILFPR
Sbjct: 359 PRRARSQSVPRPARDDPLSPRKQLEQSTDSRRVRDWDPRAQPSEPILFPR 408

[Close]
BLAST of CSPI03G41380 vs. TrEMBL
Match: A0A0J8B252_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_011870 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 

Query: 41  PRAQPSEPILFPRLRIHFADFPYLHCSIDQRLFTLET 78
           PRAQPSEPILFP+LRIHFADFP LHCSIDQRLFTLET
Sbjct: 273 PRAQPSEPILFPKLRIHFADFPCLHCSIDQRLFTLET 309

[Close]
BLAST of CSPI03G41380 vs. TrEMBL
Match: X1WLL8_ACYPI (Uncharacterized protein OS=Acyrthosiphon pisum PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-09
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 

Query: 42  RAQPSEPILFPRLRIHFADFPYLHCSIDQRLFTLET 78
           R QP EPIL P+LRI+FADFPYLHCSI+QRLFTLET
Sbjct: 110 RTQPLEPILIPKLRIYFADFPYLHCSINQRLFTLET 145

[Close]
BLAST of CSPI03G41380 vs. NCBI nr
Match: gi|700204682|gb|KGN59815.1| (hypothetical protein Csa_3G848246 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-34
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 1 

Query: 1  MHGPRRSRSQSVPRSARDDLLSPRKQLEQSTNSRRVRDWDPRAQPSEPILFPRLRIHFAD 60
          MHGPRRSRSQSVP  ARDDLLSPRKQ+EQSTNSRRVRDWDPRAQPSEPILFPRLRIHFAD
Sbjct: 1  MHGPRRSRSQSVPWPARDDLLSPRKQVEQSTNSRRVRDWDPRAQPSEPILFPRLRIHFAD 60

Query: 61 FPYLHCSIDQRLFTLET 78
          FPYLHCSIDQRLFTLET
Sbjct: 61 FPYLHCSIDQRLFTLET 77

[Close]
BLAST of CSPI03G41380 vs. NCBI nr
Match: gi|947068890|gb|KRH17781.1| (hypothetical protein GLYMA_13G015400 [Glycine max])

HSP 1 Score: 141.4 bits (355), Expect = 6.9e-31
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 4   PRRSRSQSVPRSARDDLLSPRKQLEQSTNSRRVRDWDPRAQPSEPILFPRLRIHFADFPY 63
           PRR+RSQSVPR ARDD LSPRKQLEQST+SRRVRDWDPRAQPSEPILFPRLRIHFADFP 
Sbjct: 124 PRRARSQSVPRPARDDPLSPRKQLEQSTDSRRVRDWDPRAQPSEPILFPRLRIHFADFPC 183

Query: 64  LHCSIDQRLFTLET 78
           LHCSIDQRLFTLET
Sbjct: 184 LHCSIDQRLFTLET 197

[Close]
BLAST of CSPI03G41380 vs. NCBI nr
Match: gi|947068961|gb|KRH17852.1| (hypothetical protein GLYMA_13G021700, partial [Glycine max])

HSP 1 Score: 92.4 bits (228), Expect = 3.7e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 4   PRRSRSQSVPRSARDDLLSPRKQLEQSTNSRRVRDWDPRAQPSEPILFPR 54
           PRR+RSQSVPR ARDD LSPRKQLEQST+SRRVRDWDPRAQPSEPILFPR
Sbjct: 359 PRRARSQSVPRPARDDPLSPRKQLEQSTDSRRVRDWDPRAQPSEPILFPR 408

[Close]
BLAST of CSPI03G41380 vs. NCBI nr
Match: gi|870841381|gb|KMS95149.1| (hypothetical protein BVRB_011870 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 

Query: 41  PRAQPSEPILFPRLRIHFADFPYLHCSIDQRLFTLET 78
           PRAQPSEPILFP+LRIHFADFP LHCSIDQRLFTLET
Sbjct: 273 PRAQPSEPILFPKLRIHFADFPCLHCSIDQRLFTLET 309

[Close]
BLAST of CSPI03G41380 vs. NCBI nr
Match: gi|339263024|ref|XP_003367113.1| (conserved hypothetical protein [Trichinella spiralis])

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 43 AQPSEPILFPRLRIHFADFPYLHCSIDQRLFTLET 78
          AQP EPIL P+LRI FADFPYLH SI QRLFTLET
Sbjct: 35 AQPLEPILVPKLRIRFADFPYLHYSIGQRLFTLET 69

The following BLAST results are available for this feature:
BLAST of CSPI03G41380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G41380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCS5_CUCSA9.4e-3596.10Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848246 PE=4 SV=1[more]
A0A0R0GRW0_SOYBN4.8e-3193.24Uncharacterized protein OS=Glycine max GN=GLYMA_13G015400 PE=4 SV=1[more]
A0A0R0GHB5_SOYBN2.6e-1692.00Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_13G021700 PE=4 SV=1[more]
A0A0J8B252_BETVU2.9e-1294.59Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_011870 PE=4 SV=... [more]
X1WLL8_ACYPI2.3e-0983.33Uncharacterized protein OS=Acyrthosiphon pisum PE=4 SV=1[more]
BLAST of CSPI03G41380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G41380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204682|gb|KGN59815.1|1.3e-3496.10hypothetical protein Csa_3G848246 [Cucumis sativus][more]
gi|947068890|gb|KRH17781.1|6.9e-3193.24hypothetical protein GLYMA_13G015400 [Glycine max][more]
gi|947068961|gb|KRH17852.1|3.7e-1692.00hypothetical protein GLYMA_13G021700, partial [Glycine max][more]
gi|870841381|gb|KMS95149.1|4.2e-1294.59hypothetical protein BVRB_011870 [Beta vulgaris subsp. vulgaris][more]
gi|339263024|ref|XP_003367113.1|2.4e-0782.86conserved hypothetical protein [Trichinella spiralis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G41380.1CSPI03G41380.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33047FAMILY NOT NAMEDcoord: 11..77
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G41380CsaV3_3G043820Cucumber (Chinese Long) v3cpicucB145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G41380Watermelon (Charleston Gray)cpiwcgB186
CSPI03G41380Watermelon (Charleston Gray)cpiwcgB263
CSPI03G41380Watermelon (97103) v1cpiwmB215
CSPI03G41380Watermelon (97103) v1cpiwmB190
CSPI03G41380Cucurbita pepo (Zucchini)cpecpiB137
CSPI03G41380Cucurbita pepo (Zucchini)cpecpiB308
CSPI03G41380Cucurbita pepo (Zucchini)cpecpiB560
CSPI03G41380Cucurbita pepo (Zucchini)cpecpiB604
CSPI03G41380Bottle gourd (USVL1VR-Ls)cpilsiB173
CSPI03G41380Bottle gourd (USVL1VR-Ls)cpilsiB233
CSPI03G41380Melon (DHL92) v3.6.1cpimedB175
CSPI03G41380Melon (DHL92) v3.6.1cpimedB198
CSPI03G41380Cucumber (Gy14) v2cgybcpiB111
CSPI03G41380Cucumber (Gy14) v2cgybcpiB314
CSPI03G41380Silver-seed gourdcarcpiB0129
CSPI03G41380Silver-seed gourdcarcpiB0229
CSPI03G41380Silver-seed gourdcarcpiB1061
CSPI03G41380Cucumber (Chinese Long) v3cpicucB192
CSPI03G41380Watermelon (97103) v2cpiwmbB249
CSPI03G41380Watermelon (97103) v2cpiwmbB267
CSPI03G41380Wax gourdcpiwgoB289
CSPI03G41380Wax gourdcpiwgoB347
CSPI03G41380Wild cucumber (PI 183967)cpicpiB143
CSPI03G41380Cucumber (Gy14) v1cgycpiB504
CSPI03G41380Cucumber (Gy14) v1cgycpiB532
CSPI03G41380Cucurbita maxima (Rimu)cmacpiB246
CSPI03G41380Cucurbita maxima (Rimu)cmacpiB362
CSPI03G41380Cucurbita maxima (Rimu)cmacpiB449
CSPI03G41380Cucurbita maxima (Rimu)cmacpiB909
CSPI03G41380Cucurbita moschata (Rifu)cmocpiB233
CSPI03G41380Cucurbita moschata (Rifu)cmocpiB354
CSPI03G41380Cucurbita moschata (Rifu)cmocpiB437
CSPI03G41380Cucurbita moschata (Rifu)cmocpiB888
CSPI03G41380Cucumber (Chinese Long) v2cpicuB120
CSPI03G41380Cucumber (Chinese Long) v2cpicuB163
CSPI03G41380Melon (DHL92) v3.5.1cpimeB182
CSPI03G41380Melon (DHL92) v3.5.1cpimeB204