CSPI03G40450 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G40450
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 34666635 .. 34667192 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTATTTTCATATATTCACATTGTATAGATCAGAAATTTCTTGAAATTTCCACACAATTCCTATAAATAAATAGCCCCCCATTATAAGCACACATCTATATCATCATCAAACACCAAATTCTCTCTCTTTATTTCTTCTTCTTCTTCTTCTTCTTTCATATATTATTATATGGCAGGTCTTCAATACAAGTTCTTCCCCACTGACTTCCTCTACCCTCGTCCATCATCATCCTCCGACGTCCCCAACAACATCGTTGTCTCCGTCGTTCCTCCCAAACCCGACGATCTTACCGCCAAACCCAAAGGAGCAATCCACAGTACCAATAACAAGGCTGCTGTTGCTGTTGAACCTATTGTCATCTCCCGGAATAACCCCAAGAACTCCACTTTCTAATTAATCCCAACTCTGTATTTTTCATTTTGTATCAATAACTTTTGTTTTTTGTTTCTGGGTTTGCTTAATTAATCCGTGTAATTTCATTATTGAAGTTGGAAAACTATTTACTTGAGCTTCAGAATAATACAAAAATTATATGAAGGAACAGATACCCTTCTTC

mRNA sequence

ATGGCAGGTCTTCAATACAAGTTCTTCCCCACTGACTTCCTCTACCCTCGTCCATCATCATCCTCCGACGTCCCCAACAACATCGTTGTCTCCGTCGTTCCTCCCAAACCCGACGATCTTACCGCCAAACCCAAAGGAGCAATCCACAGTACCAATAACAAGGCTGCTGTTGCTGTTGAACCTATTGTCATCTCCCGGAATAACCCCAAGAACTCCACTTTCTAA

Coding sequence (CDS)

ATGGCAGGTCTTCAATACAAGTTCTTCCCCACTGACTTCCTCTACCCTCGTCCATCATCATCCTCCGACGTCCCCAACAACATCGTTGTCTCCGTCGTTCCTCCCAAACCCGACGATCTTACCGCCAAACCCAAAGGAGCAATCCACAGTACCAATAACAAGGCTGCTGTTGCTGTTGAACCTATTGTCATCTCCCGGAATAACCCCAAGAACTCCACTTTCTAA
Homology
[Close]
BLAST of CSPI03G40450 vs. TrEMBL
Match: A0A0A0LCI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G841490 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.5e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE 60
          MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE 60

Query: 61 PIVISRNNPKNSTF 75
          PIVISRNNPKNSTF
Sbjct: 61 PIVISRNNPKNSTF 74

[Close]
BLAST of CSPI03G40450 vs. NCBI nr
Match: gi|700204592|gb|KGN59725.1| (hypothetical protein Csa_3G841490 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 6.4e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE 60
          MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKAAVAVE 60

Query: 61 PIVISRNNPKNSTF 75
          PIVISRNNPKNSTF
Sbjct: 61 PIVISRNNPKNSTF 74

The following BLAST results are available for this feature:
BLAST of CSPI03G40450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G40450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCI2_CUCSA4.5e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G841490 PE=4 SV=1[more]
BLAST of CSPI03G40450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G40450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204592|gb|KGN59725.1|6.4e-34100.00hypothetical protein Csa_3G841490 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G40450.1CSPI03G40450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G40450Csa3G841490Cucumber (Chinese Long) v2cpicuB120
CSPI03G40450MELO3C026600Melon (DHL92) v3.5.1cpimeB214
CSPI03G40450MELO3C026600.2Melon (DHL92) v3.6.1cpimedB208
CSPI03G40450CsaV3_3G042980Cucumber (Chinese Long) v3cpicucB145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G40450Bottle gourd (USVL1VR-Ls)cpilsiB184
CSPI03G40450Cucumber (Gy14) v2cgybcpiB111
CSPI03G40450Watermelon (97103) v2cpiwmbB189
CSPI03G40450Wax gourdcpiwgoB238
CSPI03G40450Cucumber (Gy14) v1cgycpiB504
CSPI03G40450Cucurbita maxima (Rimu)cmacpiB257
CSPI03G40450Watermelon (Charleston Gray)cpiwcgB195
CSPI03G40450Watermelon (97103) v1cpiwmB198