CSPI03G39780 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G39780
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 34116700 .. 34117216 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAAGAAGAGGATAAAGGAAGGTACCATTGCTCAGTTGAGCGATTCCGGTGGGGAATCGGAGAATGTGAGAAGGATCGACGGCGGAGATTTGAGGTTTTTGGTGGTTCCGTTTTTGGTTTTGATTTTGAGGGAAATGGAGAGAATGAAGAGACAGATGTGGGGAAGGGAAGAAACTGGGACCGAAACAGGACCGGACCGTATCGAAGAGACCGTCTTTTTTCTTTTTTTCTTTTTTTCTTTTTCCTTTTTTTTCTTCATTAATAAATCCTTTTCTTTCTTTTCCTCTTTTTCTTTTCAATTGAGATACCTGACGGGGAACGTTATGTGAGAGTAGGAGGCTCCCTACTCGCGATATTTAATTAACACGTGGACAGCTGAAGCAATTAAAGTACCCCGACTCTCAAAGCAACCGGTTGCCTTTCCTGATAATGCCATTCGGCTGCCTATTTGGATACTGAACATCCCGGTTTCCGGTTGCCTTTCTTTTAACATATTTCGATACAAGACGTAA

mRNA sequence

ATGAGAAAAGAAGAGGATAAAGGAAGGTACCATTGCTCAGTTGAGCGATTCCGGTGGGGAATCGGAGAATGTGAGAAGGATCGACGGCGGAGATTTGAGGTTTTTGGTGGTTCCGTTTTTGGTTTTGATTTTGAGGGAAATGGAGAGAATGAAGAGACAGATGTGGGGAAGGGAAGAAACTGGGACCGAAACAGGACCGGACCGTATCGAAGAGACCCTGAAGCAATTAAAGTACCCCGACTCTCAAAGCAACCGGTTGCCTTTCCTGATAATGCCATTCGGCTGCCTATTTGGATACTGAACATCCCGGTTTCCGGTTGCCTTTCTTTTAACATATTTCGATACAAGACGTAA

Coding sequence (CDS)

ATGAGAAAAGAAGAGGATAAAGGAAGGTACCATTGCTCAGTTGAGCGATTCCGGTGGGGAATCGGAGAATGTGAGAAGGATCGACGGCGGAGATTTGAGGTTTTTGGTGGTTCCGTTTTTGGTTTTGATTTTGAGGGAAATGGAGAGAATGAAGAGACAGATGTGGGGAAGGGAAGAAACTGGGACCGAAACAGGACCGGACCGTATCGAAGAGACCCTGAAGCAATTAAAGTACCCCGACTCTCAAAGCAACCGGTTGCCTTTCCTGATAATGCCATTCGGCTGCCTATTTGGATACTGAACATCCCGGTTTCCGGTTGCCTTTCTTTTAACATATTTCGATACAAGACGTAA
Homology
[Close]
BLAST of CSPI03G39780 vs. TrEMBL
Match: A0A0A0LCA8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G835870 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 2.5e-63
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MRKEEDKGRYHCSVERFRWGIGECEKDRRRRFEVFGGSVFGFDFEGNGENEETDVGKGRN 60
           MRKEEDKGRYHCSVERFRWGIGECEKDRRRRFEVFGGSVFGFDFEGNGENEETDVGKGRN
Sbjct: 1   MRKEEDKGRYHCSVERFRWGIGECEKDRRRRFEVFGGSVFGFDFEGNGENEETDVGKGRN 60

Query: 61  WDRNRTGPYRRDPEAIKVPRLSKQPVAFPDNAIRLPIWILNIPVSGCLSFNIFRYKT 118
           WDRNRTGPYRRDPEAIKVPRLSKQPVAFPDNAIRLPIWILNIPVS CLSFNIFRYKT
Sbjct: 61  WDRNRTGPYRRDPEAIKVPRLSKQPVAFPDNAIRLPIWILNIPVSSCLSFNIFRYKT 117

[Close]
BLAST of CSPI03G39780 vs. NCBI nr
Match: gi|700204517|gb|KGN59650.1| (hypothetical protein Csa_3G835870 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 3.6e-63
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MRKEEDKGRYHCSVERFRWGIGECEKDRRRRFEVFGGSVFGFDFEGNGENEETDVGKGRN 60
           MRKEEDKGRYHCSVERFRWGIGECEKDRRRRFEVFGGSVFGFDFEGNGENEETDVGKGRN
Sbjct: 1   MRKEEDKGRYHCSVERFRWGIGECEKDRRRRFEVFGGSVFGFDFEGNGENEETDVGKGRN 60

Query: 61  WDRNRTGPYRRDPEAIKVPRLSKQPVAFPDNAIRLPIWILNIPVSGCLSFNIFRYKT 118
           WDRNRTGPYRRDPEAIKVPRLSKQPVAFPDNAIRLPIWILNIPVS CLSFNIFRYKT
Sbjct: 61  WDRNRTGPYRRDPEAIKVPRLSKQPVAFPDNAIRLPIWILNIPVSSCLSFNIFRYKT 117

The following BLAST results are available for this feature:
BLAST of CSPI03G39780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G39780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCA8_CUCSA2.5e-6399.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G835870 PE=4 SV=1[more]
BLAST of CSPI03G39780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G39780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204517|gb|KGN59650.1|3.6e-6399.15hypothetical protein Csa_3G835870 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G39780.1CSPI03G39780.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G39780Csa3G835870Cucumber (Chinese Long) v2cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G39780Cucurbita maxima (Rimu)cmacpiB121
CSPI03G39780Cucurbita maxima (Rimu)cmacpiB241
CSPI03G39780Cucurbita maxima (Rimu)cmacpiB287
CSPI03G39780Cucurbita maxima (Rimu)cmacpiB711
CSPI03G39780Cucurbita pepo (Zucchini)cpecpiB395
CSPI03G39780Cucurbita moschata (Rifu)cmocpiB116
CSPI03G39780Cucurbita moschata (Rifu)cmocpiB229
CSPI03G39780Cucurbita moschata (Rifu)cmocpiB277
CSPI03G39780Cucurbita moschata (Rifu)cmocpiB705
CSPI03G39780Cucumber (Chinese Long) v2cpicuB106
CSPI03G39780Melon (DHL92) v3.5.1cpimeB162
CSPI03G39780Melon (DHL92) v3.5.1cpimeB171
CSPI03G39780Melon (DHL92) v3.5.1cpimeB189
CSPI03G39780Melon (DHL92) v3.5.1cpimeB214
CSPI03G39780Watermelon (Charleston Gray)cpiwcgB179
CSPI03G39780Watermelon (Charleston Gray)cpiwcgB195
CSPI03G39780Watermelon (Charleston Gray)cpiwcgB234
CSPI03G39780Watermelon (Charleston Gray)cpiwcgB251
CSPI03G39780Watermelon (97103) v1cpiwmB185
CSPI03G39780Watermelon (97103) v1cpiwmB198
CSPI03G39780Watermelon (97103) v1cpiwmB238
CSPI03G39780Watermelon (97103) v1cpiwmB260
CSPI03G39780Watermelon (97103) v1cpiwmB280
CSPI03G39780Cucurbita pepo (Zucchini)cpecpiB173
CSPI03G39780Cucurbita pepo (Zucchini)cpecpiB599
CSPI03G39780Cucurbita pepo (Zucchini)cpecpiB674
CSPI03G39780Bottle gourd (USVL1VR-Ls)cpilsiB174
CSPI03G39780Bottle gourd (USVL1VR-Ls)cpilsiB184
CSPI03G39780Bottle gourd (USVL1VR-Ls)cpilsiB193
CSPI03G39780Bottle gourd (USVL1VR-Ls)cpilsiB223
CSPI03G39780Melon (DHL92) v3.6.1cpimedB155
CSPI03G39780Melon (DHL92) v3.6.1cpimedB182
CSPI03G39780Melon (DHL92) v3.6.1cpimedB208
CSPI03G39780Cucumber (Gy14) v2cgybcpiB111
CSPI03G39780Silver-seed gourdcarcpiB0291
CSPI03G39780Silver-seed gourdcarcpiB0401
CSPI03G39780Silver-seed gourdcarcpiB0472
CSPI03G39780Silver-seed gourdcarcpiB0719
CSPI03G39780Cucumber (Chinese Long) v3cpicucB128
CSPI03G39780Cucumber (Chinese Long) v3cpicucB131
CSPI03G39780Cucumber (Chinese Long) v3cpicucB145
CSPI03G39780Cucumber (Chinese Long) v3cpicucB175
CSPI03G39780Watermelon (97103) v2cpiwmbB189
CSPI03G39780Watermelon (97103) v2cpiwmbB220
CSPI03G39780Watermelon (97103) v2cpiwmbB236
CSPI03G39780Watermelon (97103) v2cpiwmbB262
CSPI03G39780Wax gourdcpiwgoB238
CSPI03G39780Wax gourdcpiwgoB267
CSPI03G39780Wax gourdcpiwgoB356
CSPI03G39780Wild cucumber (PI 183967)cpicpiB020
CSPI03G39780Cucumber (Gy14) v1cgycpiB314
CSPI03G39780Cucumber (Gy14) v1cgycpiB504