CSPI03G39460 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G39460
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 33892663 .. 33893125 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGAGTTGATCGCCGAGAAATTAAAATGGTTCAGACCCAACGGCGCTTCCGATTTCCGCCGTTGTGTTCTCGAATTAGATCATTCTGGTTTCCAACAACTGCAAATCAAAACCTCTGTTCCTGAAAAAAAAAATCTCCGTTCGATTCTGCAGAGCGACAACAGGCAGGTGGGTTTGAAATGGTCGCATCAAGTGGAAAGAAATTGTTAGTTCTTCATCTTCTCTCTCTTTTTCTTCCATTGGAGATCCAATTTTCTCGCGGGATAGCGTTTCTATATTTAGAAAATGGAAAATTTGTCTCTGCATTTTCTTCTTTCTTCTCGCGAAGTCTTTGAATATGGGTTCTCAAAAAAGCATGGAGACATACGTACGTTTGAATTCTGAATCTCTGATTGGTTTGAAACTCCGATCATCTCAGATTTTCACTCTTTGCACCGGTGACGGTGCTGATGGCCGGTGA

mRNA sequence

ATGCGAGAGTTGATCGCCGAGAAATTAAAATGGTTCAGACCCAACGGCGCTTCCGATTTCCGCCGTTGTGTTCTCGAATTAGATCATTCTGGTTTCCAACAACTGCAAATCAAAACCTCTGTTCCTGAAAAAAAAAATCTCCGTTCGATTCTGCAGAGCGACAACAGGCAGTCTTTGAATATGGGTTCTCAAAAAAGCATGGAGACATACGTACGTTTGAATTCTGAATCTCTGATTGGTTTGAAACTCCGATCATCTCAGATTTTCACTCTTTGCACCGGTGACGGTGCTGATGGCCGGTGA

Coding sequence (CDS)

ATGCGAGAGTTGATCGCCGAGAAATTAAAATGGTTCAGACCCAACGGCGCTTCCGATTTCCGCCGTTGTGTTCTCGAATTAGATCATTCTGGTTTCCAACAACTGCAAATCAAAACCTCTGTTCCTGAAAAAAAAAATCTCCGTTCGATTCTGCAGAGCGACAACAGGCAGTCTTTGAATATGGGTTCTCAAAAAAGCATGGAGACATACGTACGTTTGAATTCTGAATCTCTGATTGGTTTGAAACTCCGATCATCTCAGATTTTCACTCTTTGCACCGGTGACGGTGCTGATGGCCGGTGA
Homology
[Close]
BLAST of CSPI03G39460 vs. TrEMBL
Match: A0A0A0LC73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G829050 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MRELIAEKLKWFRPNGASDFRRCVLELDHSGFQQLQIKTSVPEKKNLRSILQSDNRQSLN 60
           MRELIAEKLKWFRPNGASDFRRCVLELDHSGFQQLQIKTSVPEKKNLRSILQSDNRQSLN
Sbjct: 1   MRELIAEKLKWFRPNGASDFRRCVLELDHSGFQQLQIKTSVPEKKNLRSILQSDNRQSLN 60

Query: 61  MGSQKSMETYVRLNSESLIGLKLRSSQIFTLCTGDGADGR 101
           MGSQKSMETYVRLNSESLIGLKLRSSQIFTLCTGDGADGR
Sbjct: 61  MGSQKSMETYVRLNSESLIGLKLRSSQIFTLCTGDGADGR 100

[Close]
BLAST of CSPI03G39460 vs. NCBI nr
Match: gi|700204482|gb|KGN59615.1| (hypothetical protein Csa_3G829050 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.6e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MRELIAEKLKWFRPNGASDFRRCVLELDHSGFQQLQIKTSVPEKKNLRSILQSDNRQSLN 60
           MRELIAEKLKWFRPNGASDFRRCVLELDHSGFQQLQIKTSVPEKKNLRSILQSDNRQSLN
Sbjct: 1   MRELIAEKLKWFRPNGASDFRRCVLELDHSGFQQLQIKTSVPEKKNLRSILQSDNRQSLN 60

Query: 61  MGSQKSMETYVRLNSESLIGLKLRSSQIFTLCTGDGADGR 101
           MGSQKSMETYVRLNSESLIGLKLRSSQIFTLCTGDGADGR
Sbjct: 61  MGSQKSMETYVRLNSESLIGLKLRSSQIFTLCTGDGADGR 100

The following BLAST results are available for this feature:
BLAST of CSPI03G39460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G39460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LC73_CUCSA1.1e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G829050 PE=4 SV=1[more]
BLAST of CSPI03G39460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G39460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204482|gb|KGN59615.1|1.6e-48100.00hypothetical protein Csa_3G829050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G39460.1CSPI03G39460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G39460Csa3G829050Cucumber (Chinese Long) v2cpicuB120
CSPI03G39460CsaV3_3G041920Cucumber (Chinese Long) v3cpicucB145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G39460Wax gourdcpiwgoB220
CSPI03G39460Wax gourdcpiwgoB267
CSPI03G39460Wax gourdcpiwgoB356
CSPI03G39460Wild cucumber (PI 183967)cpicpiB020
CSPI03G39460Cucumber (Gy14) v1cgycpiB314
CSPI03G39460Cucumber (Gy14) v1cgycpiB504
CSPI03G39460Cucurbita maxima (Rimu)cmacpiB122
CSPI03G39460Cucurbita maxima (Rimu)cmacpiB241
CSPI03G39460Cucurbita maxima (Rimu)cmacpiB711
CSPI03G39460Cucurbita moschata (Rifu)cmocpiB113
CSPI03G39460Cucurbita moschata (Rifu)cmocpiB229
CSPI03G39460Cucurbita moschata (Rifu)cmocpiB705
CSPI03G39460Melon (DHL92) v3.5.1cpimeB214
CSPI03G39460Watermelon (Charleston Gray)cpiwcgB179
CSPI03G39460Watermelon (Charleston Gray)cpiwcgB195
CSPI03G39460Watermelon (97103) v1cpiwmB185
CSPI03G39460Watermelon (97103) v1cpiwmB198
CSPI03G39460Watermelon (97103) v1cpiwmB260
CSPI03G39460Cucurbita pepo (Zucchini)cpecpiB599
CSPI03G39460Cucurbita pepo (Zucchini)cpecpiB673
CSPI03G39460Bottle gourd (USVL1VR-Ls)cpilsiB184
CSPI03G39460Bottle gourd (USVL1VR-Ls)cpilsiB223
CSPI03G39460Melon (DHL92) v3.6.1cpimedB182
CSPI03G39460Melon (DHL92) v3.6.1cpimedB208
CSPI03G39460Cucumber (Gy14) v2cgybcpiB111
CSPI03G39460Silver-seed gourdcarcpiB0243
CSPI03G39460Silver-seed gourdcarcpiB0472
CSPI03G39460Cucumber (Chinese Long) v3cpicucB131
CSPI03G39460Watermelon (97103) v2cpiwmbB189
CSPI03G39460Watermelon (97103) v2cpiwmbB236
CSPI03G39460Watermelon (97103) v2cpiwmbB262