CSPI03G37760 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G37760
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Pentatricopeptide repeat-containing protein, putative
Location	Chr3 : 32691040 .. 32691766 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGGTGAGCTTAAGGACAAAGCCATGTCGATTTCAAAAGAGATGGAAGATGTTAAATCCAAAGGTCCGCAACGACCATGCAGAATTTTACTTCCCCCTTTATGGAGAACTTCAAATGGAAGATGAAGTGGGGAGGGTGTGGAAGATCTGCAAATCAAATCCTCGTATTGGAGAATCCGTGGCTGCCATTGTTGCTTGGGGAAAGCTGAAGTTCATATTGCTGTAAAAACATGGAAGCTATCTTAAAACAATATTGTACCATGTTAAGGGTTTATTCAAAGTAAGATGGTGACAAAGGGCGAGGAACTAGTCAAGCAAATGGCAGATAGCAGTTGCCACATTGGTCCGTTGGCATGGGATGCCCTTGTGAAGCTCTATGTGGAAGCTGGAGAGGTAGAAAAAGCAGAATCTTTCTTGCTGACGGCTGTTCAACAAAACCAGATGAAGCCAGTGGTTAATTACCACATTCATTATGCAAGGTGGGGCGATGTCCACAATGCAGAGAAATTCTTTCATAAGATGAAACTGTCTATCTAGTTACGTGGCTCGATTCCGCCAATTTGAAACTCTAATACAGGCATACCTCAACGCCAAGGCTCCGGCCTATGGTATGAGAGATAGAATTGAAGGCAGATAATGTTTTTCTAGACAATGCTTTGGCAGAAAATTTAGCTCAAGCTGATGCTCTCAGGAAGACGGTAGTGTCTGATTTGCTTGACTGA

mRNA sequence

ATGCTTCAGGTGAGCTTAAGGACAAAGCCATGTCGATTTCAAAAGAGATGGAAGATGTTAAATCCAAAGGTCCGCAACGACCATGCAGAATTTTACTTCCCCCTTTATGGAGAACTTCAAATGGAAGATGAAGTGGGGAGGGTGTGGAAGATCTGCAAATCAAATCCTCGTATTGGAGAATCCGTGGCTGCCATTGTTGCTTGGGGAAAGCTGAAGTTCATATTGCTTAAGATGGTGACAAAGGGCGAGGAACTAGTCAAGCAAATGGCAGATAGCAGTTGCCACATTGGTCCGTTGGCATGGGATGCCCTTGTGAAGCTCTATGTGGAAGCTGGAGAGGTAGAAAAAGCAGAATCTTTCTTGCTGACGGCTGTTCAACAAAACCAGATGAAGCCAGTGGTTAATTACCACATTCATTATGCAAGGTGGGGCGATGCATACCTCAACGCCAAGGCTCCGGCCTATGACAATGCTTTGGCAGAAAATTTAGCTCAAGCTGATGCTCTCAGGAAGACGGTAGTGTCTGATTTGCTTGACTGA

Coding sequence (CDS)

ATGCTTCAGGTGAGCTTAAGGACAAAGCCATGTCGATTTCAAAAGAGATGGAAGATGTTAAATCCAAAGGTCCGCAACGACCATGCAGAATTTTACTTCCCCCTTTATGGAGAACTTCAAATGGAAGATGAAGTGGGGAGGGTGTGGAAGATCTGCAAATCAAATCCTCGTATTGGAGAATCCGTGGCTGCCATTGTTGCTTGGGGAAAGCTGAAGTTCATATTGCTTAAGATGGTGACAAAGGGCGAGGAACTAGTCAAGCAAATGGCAGATAGCAGTTGCCACATTGGTCCGTTGGCATGGGATGCCCTTGTGAAGCTCTATGTGGAAGCTGGAGAGGTAGAAAAAGCAGAATCTTTCTTGCTGACGGCTGTTCAACAAAACCAGATGAAGCCAGTGGTTAATTACCACATTCATTATGCAAGGTGGGGCGATGCATACCTCAACGCCAAGGCTCCGGCCTATGACAATGCTTTGGCAGAAAATTTAGCTCAAGCTGATGCTCTCAGGAAGACGGTAGTGTCTGATTTGCTTGACTGA

Homology

[Close]

BLAST of CSPI03G37760 vs. Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-24
Identity = 77/220 (35.00%), Postives = 110/220 (50.00%), Query Frame = 1


Query: 35  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWG---KLK------------------- 94
           +Y  L  EDEV R+WKIC+S P   ES+AAI A+G   K++                   
Sbjct: 377 IYASLGREDEVKRIWKICESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSS 436

Query: 95  --------FILLKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESFLLTA 154
                   ++  KM++KG++LVK+MA+S C I    WDAL+KLYVEAGEVEKA+S L  A
Sbjct: 437 TYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKA 496

Query: 155 VQQNQMKPVVNYHIH----YARWGD----------------------------AYLNAKA 180
            +Q+  K ++N  ++    Y++ GD                            AY+NAK+
Sbjct: 497 SKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKS 556

[Close]

BLAST of CSPI03G37760 vs. Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-23
Identity = 85/224 (37.95%), Postives = 112/224 (50.00%), Query Frame = 1


Query: 35  LYGELQMEDEVGRVW----KICKSNPRIGESVAAIVAW---GKLK--------------- 94
           +YG LQ EDEV RVW    +    NPR  E +AAI+A+    K+K               
Sbjct: 375 VYGYLQREDEVRRVWKICEE----NPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHR 434

Query: 95  ------------FILLKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESF 154
                       ++  KMV++G++LVKQM+DS C+IG L WDA++KLYVEAGEVEKAES 
Sbjct: 435 VSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESS 494

Query: 155 LLTAVQQNQMKPVVN---YHIH-YARWGDAYL---------------------------- 180
           L  A+Q  Q+KP+++   Y +H Y R GD +                             
Sbjct: 495 LSKAIQSKQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAYV 554

[Close]

BLAST of CSPI03G37760 vs. Swiss-Prot
Match: PP234_ARATH (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 72/221 (32.58%), Postives = 98/221 (44.34%), Query Frame = 1


Query: 34  PLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK--------------------- 93
           PLY ++   D V R+ +    NPR    ++AI AWGKLK                     
Sbjct: 389 PLYADIGDSDNVRRLSRFVDQNPRYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPM 448

Query: 94  ---FILL------KMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESFLLT 153
              F L+      KM+ KG +LVK+M ++   IGP  W ALVKLY++AGEV KAE  L  
Sbjct: 449 MPYFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNR 508

Query: 154 AVQQNQMKPVVNYHI----HYARWGD----------------------------AYLNAK 180
           A + N+M+P+   ++     YA+ GD                            AY+NAK
Sbjct: 509 ATKDNKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAYINAK 568

[Close]

BLAST of CSPI03G37760 vs. TrEMBL
Match: A0A0A0LCC4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G819950 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.2e-98
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


Query: 1   MLQVSLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGE 60
           MLQVSLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGE
Sbjct: 1   MLQVSLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGE 60

Query: 61  SVAAIVAWGKLKFILLKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESF 120
           SVAAIVAWGKLKFILLKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESF
Sbjct: 61  SVAAIVAWGKLKFILLKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESF 120

Query: 121 LLTAVQQNQMKPVVNYHIHYARWGDAYLNAKAPAYDNALAENLAQADALRKTVVSDLLD 180
           LLTAVQQNQMKPVVNYHIHYARWGDAYLNAKAPAYDNALAENLAQADALRKTVVSDLLD
Sbjct: 121 LLTAVQQNQMKPVVNYHIHYARWGDAYLNAKAPAYDNALAENLAQADALRKTVVSDLLD 179

[Close]

BLAST of CSPI03G37760 vs. TrEMBL
Match: A0A0A0LFH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G819940 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.7e-35
Identity = 100/234 (42.74%), Postives = 118/234 (50.43%), Query Frame = 1


Query: 21  NPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK-------- 80
           N ++         PLY  LQMEDEV R+WK C+ NPRI E +AAIVAWG+LK        
Sbjct: 375 NSRIPQWSRRILLPLYVSLQMEDEVRRLWKSCEENPRIEECMAAIVAWGRLKNVPEAERI 434

Query: 81  ----------------FILLK------MVTKGEELVKQMADSSCHIGPLAWDALVKLYVE 140
                           + +LK      M+TKG+ELV QMA S C I P  WDA+VKLYVE
Sbjct: 435 FNIVVKTFTKLSTRHYYTMLKVYGDSKMLTKGKELVNQMAKSGCRIDPFTWDAVVKLYVE 494

Query: 141 AGEVEKAESFLLTAVQQNQMKPVVNYHI----HYARWGD--------------------- 180
           AGEVEKA+SFL+ A QQ  MKP+   ++    HYAR GD                     
Sbjct: 495 AGEVEKADSFLVKAAQQYGMKPLFTSYMTLMDHYARKGDVHNAEKIFHKMRQSGYMPRLG 554

[Close]

BLAST of CSPI03G37760 vs. TrEMBL
Match: B9IHQ6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03540g PE=4 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 6.3e-34
Identity = 94/225 (41.78%), Postives = 119/225 (52.89%), Query Frame = 1


Query: 30  EFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKL--------KFILL----- 89
           +F  PLYG L   DEV R+WK CK +PR+ E +AAI AWG+L         F L+     
Sbjct: 394 QFMLPLYGTLGKADEVSRLWKFCKKSPRLDECMAAIEAWGQLKKIPEAEAVFELMSKTWK 453

Query: 90  -----------------KMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAES 149
                            KM++KG++L+KQM DS C IGPL WDAL+KLYVEAGEVEKA+S
Sbjct: 454 KLSSKHYSALLKVYANNKMLSKGKDLIKQMGDSGCRIGPLTWDALIKLYVEAGEVEKADS 513

Query: 150 FLLTAVQQNQMKPVVNYHI----HYARWGD----------------------------AY 180
            L  AVQQNQMKP+ + ++     YA+ GD                            AY
Sbjct: 514 ILNKAVQQNQMKPMFSSYMIIMEKYAKKGDIHNAEKMFHRMRQAGYQARSKQFQTLIQAY 573

[Close]

BLAST of CSPI03G37760 vs. TrEMBL
Match: A0A0A0LHD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G819930 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.9e-33
Identity = 102/250 (40.80%), Postives = 124/250 (49.60%), Query Frame = 1


Query: 6   LRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAI 65
           L+ K     K  + +N +          PLYGELQMEDEV R+W+IC+SNP I E +AAI
Sbjct: 377 LKDKAKAVLKEMEEINSEGSRRPCRILLPLYGELQMEDEVRRLWEICESNPHIEECMAAI 436

Query: 66  VAWGKLKFIL-------------------------------LKMVTKGEELVKQMADSSC 125
           VAWGKLK +                                 KM+TKG+E+VKQMA+S C
Sbjct: 437 VAWGKLKNVQEAEKIFDRVVKTGEKLSARHYSTMLNVYREDSKMLTKGKEVVKQMAESGC 496

Query: 126 HIGPLAWDALVKLYVEAGEVEKAESFLLTAVQQNQMKPVVNYHI----HYARWGD----- 180
            + P   DA+VKLYVEAGEVEKA+SFL+ AV QN+ KP+   +I     YA  GD     
Sbjct: 497 RMDPFTLDAVVKLYVEAGEVEKADSFLVKAVLQNKKKPMFTTYITLMDRYASRGDVPNVE 556

[Close]

BLAST of CSPI03G37760 vs. TrEMBL
Match: A0A067EQX0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012577mg PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-32
Identity = 91/221 (41.18%), Postives = 115/221 (52.04%), Query Frame = 1


Query: 34  PLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK--------------------- 93
           PLY EL   D+V R+WK+C+SNP +   +AAI AWGKL                      
Sbjct: 240 PLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLST 299

Query: 94  ---------FILLKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESFLLT 153
                    +   KM++KG++LVKQMA+S CHIGPLAWDALVKL+VE GEVEKA+S LL 
Sbjct: 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359

Query: 154 AVQQNQMKPVVNYHI----HYARWGD----------------------------AYLNAK 180
           A QQN+ KP+ + ++     YA+ GD                            AY+NAK
Sbjct: 360 AQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419

[Close]

BLAST of CSPI03G37760 vs. TAIR10
Match: AT1G80270.1 (AT1G80270.1 PENTATRICOPEPTIDE REPEAT 596)

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-26
Identity = 77/220 (35.00%), Postives = 110/220 (50.00%), Query Frame = 1


Query: 35  LYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWG---KLK------------------- 94
           +Y  L  EDEV R+WKIC+S P   ES+AAI A+G   K++                   
Sbjct: 377 IYASLGREDEVKRIWKICESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSS 436

Query: 95  --------FILLKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESFLLTA 154
                   ++  KM++KG++LVK+MA+S C I    WDAL+KLYVEAGEVEKA+S L  A
Sbjct: 437 TYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKA 496

Query: 155 VQQNQMKPVVNYHIH----YARWGD----------------------------AYLNAKA 180
            +Q+  K ++N  ++    Y++ GD                            AY+NAK+
Sbjct: 497 SKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKS 556

[Close]

BLAST of CSPI03G37760 vs. TAIR10
Match: AT1G15480.1 (AT1G15480.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 8.1e-25
Identity = 85/224 (37.95%), Postives = 112/224 (50.00%), Query Frame = 1


Query: 35  LYGELQMEDEVGRVW----KICKSNPRIGESVAAIVAW---GKLK--------------- 94
           +YG LQ EDEV RVW    +    NPR  E +AAI+A+    K+K               
Sbjct: 375 VYGYLQREDEVRRVWKICEE----NPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHR 434

Query: 95  ------------FILLKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESF 154
                       ++  KMV++G++LVKQM+DS C+IG L WDA++KLYVEAGEVEKAES 
Sbjct: 435 VSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESS 494

Query: 155 LLTAVQQNQMKPVVN---YHIH-YARWGDAYL---------------------------- 180
           L  A+Q  Q+KP+++   Y +H Y R GD +                             
Sbjct: 495 LSKAIQSKQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAYV 554

[Close]

BLAST of CSPI03G37760 vs. TAIR10
Match: AT3G15590.1 (AT3G15590.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 97.8 bits (242), Expect = 7.1e-21
Identity = 72/221 (32.58%), Postives = 98/221 (44.34%), Query Frame = 1


Query: 34  PLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK--------------------- 93
           PLY ++   D V R+ +    NPR    ++AI AWGKLK                     
Sbjct: 389 PLYADIGDSDNVRRLSRFVDQNPRYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPM 448

Query: 94  ---FILL------KMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESFLLT 153
              F L+      KM+ KG +LVK+M ++   IGP  W ALVKLY++AGEV KAE  L  
Sbjct: 449 MPYFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNR 508

Query: 154 AVQQNQMKPVVNYHI----HYARWGD----------------------------AYLNAK 180
           A + N+M+P+   ++     YA+ GD                            AY+NAK
Sbjct: 509 ATKDNKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAYINAK 568

[Close]

BLAST of CSPI03G37760 vs. NCBI nr
Match: gi|700204305|gb|KGN59438.1| (hypothetical protein Csa_3G819950 [Cucumis sativus])

HSP 1 Score: 367.1 bits (941), Expect = 1.8e-98
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


Query: 1   MLQVSLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGE 60
           MLQVSLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGE
Sbjct: 1   MLQVSLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGE 60

Query: 61  SVAAIVAWGKLKFILLKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESF 120
           SVAAIVAWGKLKFILLKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESF
Sbjct: 61  SVAAIVAWGKLKFILLKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESF 120

Query: 121 LLTAVQQNQMKPVVNYHIHYARWGDAYLNAKAPAYDNALAENLAQADALRKTVVSDLLD 180
           LLTAVQQNQMKPVVNYHIHYARWGDAYLNAKAPAYDNALAENLAQADALRKTVVSDLLD
Sbjct: 121 LLTAVQQNQMKPVVNYHIHYARWGDAYLNAKAPAYDNALAENLAQADALRKTVVSDLLD 179

[Close]

BLAST of CSPI03G37760 vs. NCBI nr
Match: gi|778685171|ref|XP_011652177.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 100/234 (42.74%), Postives = 118/234 (50.43%), Query Frame = 1


Query: 21  NPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLK-------- 80
           N ++         PLY  LQMEDEV R+WK C+ NPRI E +AAIVAWG+LK        
Sbjct: 375 NSRIPQWSRRILLPLYVSLQMEDEVRRLWKSCEENPRIEECMAAIVAWGRLKNVPEAERI 434

Query: 81  ----------------FILLK------MVTKGEELVKQMADSSCHIGPLAWDALVKLYVE 140
                           + +LK      M+TKG+ELV QMA S C I P  WDA+VKLYVE
Sbjct: 435 FNIVVKTFTKLSTRHYYTMLKVYGDSKMLTKGKELVNQMAKSGCRIDPFTWDAVVKLYVE 494

Query: 141 AGEVEKAESFLLTAVQQNQMKPVVNYHI----HYARWGD--------------------- 180
           AGEVEKA+SFL+ A QQ  MKP+   ++    HYAR GD                     
Sbjct: 495 AGEVEKADSFLVKAAQQYGMKPLFTSYMTLMDHYARKGDVHNAEKIFHKMRQSGYMPRLG 554

[Close]

BLAST of CSPI03G37760 vs. NCBI nr
Match: gi|659085109|ref|XP_008443248.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 5.3e-34
Identity = 102/253 (40.32%), Postives = 127/253 (50.20%), Query Frame = 1


Query: 2   LQVSLRTKPCRFQKRWKMLNPKVRNDHAEFYFPLYGELQMEDEVGRVWKICKSNPRIGES 61
           +   L+ K     K  + +N K       F  PLYGELQMEDEV R+W+IC+SNP + E 
Sbjct: 344 VSAGLKDKAKATLKETEEINSKGSRRPCRFLLPLYGELQMEDEVRRLWEICESNPHVEEC 403

Query: 62  VAAIVAWG--------------------KLK----------FILLKMVTKGEELVKQMAD 121
           +AAIVAWG                    KL           +   KM+TKG+ELV QMA+
Sbjct: 404 MAAIVAWGKLKNVQEAEKIFDRVVKTGKKLSTRHYSTMMNVYRDSKMLTKGKELVNQMAE 463

Query: 122 SSCHIGPLAWDALVKLYVEAGEVEKAESFLLTAVQQNQMKPVVNYHI----HYARWGD-- 180
           S C + P  WDA+VKLYVEAGEVEKA+SFL+ AVQQ++ KP+   +I    HYA  GD  
Sbjct: 464 SGCSMDPFTWDAVVKLYVEAGEVEKADSFLVKAVQQSKKKPLFATYIALMDHYASRGDVP 523

[Close]

BLAST of CSPI03G37760 vs. NCBI nr
Match: gi|659085103|ref|XP_008443245.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 5.3e-34
Identity = 98/221 (44.34%), Postives = 116/221 (52.49%), Query Frame = 1


Query: 34  PLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLKFIL------------------ 93
           PLYGELQMEDEV R+WK C++NPRI E +AAIVAWG+LK +                   
Sbjct: 388 PLYGELQMEDEVRRLWKSCEANPRIEECMAAIVAWGRLKNVPEAESIFNRVVKTWTKLST 447

Query: 94  ------------LKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESFLLT 153
                        KM+TKG+ELV QMA+  C + PL  DA+VKLY EAGEVEKA+SFL+ 
Sbjct: 448 RHYHAMLKVYGDSKMLTKGKELVNQMAERGCRMDPLICDAVVKLYAEAGEVEKADSFLVK 507

Query: 154 AVQQNQMKPVVNYHI----HYARWGD----------------------------AYLNAK 180
           AVQQ  MKP+   ++    HYAR GD                            AY+NAK
Sbjct: 508 AVQQYGMKPLFTSYMTLMDHYARRGDVHNAEKIFHRMRQSGFMARFGQFGTLIRAYVNAK 567

[Close]

BLAST of CSPI03G37760 vs. NCBI nr
Match: gi|659085105|ref|XP_008443246.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g15480, mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 5.3e-34
Identity = 98/221 (44.34%), Postives = 116/221 (52.49%), Query Frame = 1


Query: 34  PLYGELQMEDEVGRVWKICKSNPRIGESVAAIVAWGKLKFIL------------------ 93
           PLYGELQMEDEV R+WK C++NPRI E +AAIVAWG+LK +                   
Sbjct: 373 PLYGELQMEDEVRRLWKSCEANPRIEECMAAIVAWGRLKNVPEAESIFNRVVKTWTKLST 432

Query: 94  ------------LKMVTKGEELVKQMADSSCHIGPLAWDALVKLYVEAGEVEKAESFLLT 153
                        KM+TKG+ELV QMA+  C + PL  DA+VKLY EAGEVEKA+SFL+ 
Sbjct: 433 RHYHAMLKVYGDSKMLTKGKELVNQMAERGCRMDPLICDAVVKLYAEAGEVEKADSFLVK 492

Query: 154 AVQQNQMKPVVNYHI----HYARWGD----------------------------AYLNAK 180
           AVQQ  MKP+   ++    HYAR GD                            AY+NAK
Sbjct: 493 AVQQYGMKPLFTSYMTLMDHYARRGDVHNAEKIFHRMRQSGFMARFGQFGTLIRAYVNAK 552

The following BLAST results are available for this feature:

BLAST of CSPI03G37760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP135_ARATH	1.0e-24	35.00	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidop...	[more]
PPR44_ARATH	1.4e-23	37.95	Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidop...	[more]
PP234_ARATH	1.3e-19	32.58	Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidop...	[more]

BLAST of CSPI03G37760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCC4_CUCSA	1.2e-98	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G819950 PE=4 SV=1	[more]
A0A0A0LFH0_CUCSA	9.7e-35	42.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G819940 PE=4 SV=1	[more]
B9IHQ6_POPTR	6.3e-34	41.78	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03540g PE=4 SV=2	[more]
A0A0A0LHD8_CUCSA	6.9e-33	40.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G819930 PE=4 SV=1	[more]
A0A067EQX0_CITSI	2.6e-32	41.18	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012577mg PE=4 SV=1	[more]

BLAST of CSPI03G37760 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80270.1	5.6e-26	35.00	PENTATRICOPEPTIDE REPEAT 596	[more]
AT1G15480.1	8.1e-25	37.95	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G15590.1	7.1e-21	32.58	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CSPI03G37760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204305\|gb\|KGN59438.1\|	1.8e-98	100.00	hypothetical protein Csa_3G819950 [Cucumis sativus]	[more]
gi\|778685171\|ref\|XP_011652177.1\|	1.4e-34	42.74	PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-...	[more]
gi\|659085109\|ref\|XP_008443248.1\|	5.3e-34	40.32	PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-...	[more]
gi\|659085103\|ref\|XP_008443245.1\|	5.3e-34	44.34	PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-...	[more]
gi\|659085105\|ref\|XP_008443246.1\|	5.3e-34	44.34	PREDICTED: pentatricopeptide repeat-containing protein At1g15480, mitochondrial-...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G37760.1	CSPI03G37760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 31..177 score: 5.2
None	No IPR available	PANTHER	PTHR24015:SF26	SUBFAMILY NOT NAMED	coord: 31..177 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G37760	Bhi11G002319	Wax gourd	cpiwgoB242
CSPI03G37760	CsGy3G035260	Cucumber (Gy14) v2	cgybcpiB111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G37760	Bottle gourd (USVL1VR-Ls)	cpilsiB166
CSPI03G37760	Bottle gourd (USVL1VR-Ls)	cpilsiB184
CSPI03G37760	Melon (DHL92) v3.6.1	cpimedB208
CSPI03G37760	Silver-seed gourd	carcpiB0178
CSPI03G37760	Silver-seed gourd	carcpiB0182
CSPI03G37760	Silver-seed gourd	carcpiB0280
CSPI03G37760	Cucumber (Chinese Long) v3	cpicucB145
CSPI03G37760	Watermelon (97103) v2	cpiwmbB189
CSPI03G37760	Wax gourd	cpiwgoB220
CSPI03G37760	Wax gourd	cpiwgoB334
CSPI03G37760	Cucumber (Gy14) v1	cgycpiB504
CSPI03G37760	Cucurbita maxima (Rimu)	cmacpiB241
CSPI03G37760	Cucurbita maxima (Rimu)	cmacpiB670
CSPI03G37760	Cucurbita maxima (Rimu)	cmacpiB835
CSPI03G37760	Cucurbita maxima (Rimu)	cmacpiB839
CSPI03G37760	Cucurbita moschata (Rifu)	cmocpiB229
CSPI03G37760	Cucurbita moschata (Rifu)	cmocpiB821
CSPI03G37760	Cucurbita moschata (Rifu)	cmocpiB824
CSPI03G37760	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G37760	Melon (DHL92) v3.5.1	cpimeB214
CSPI03G37760	Watermelon (Charleston Gray)	cpiwcgB195
CSPI03G37760	Watermelon (97103) v1	cpiwmB198
CSPI03G37760	Cucurbita pepo (Zucchini)	cpecpiB599
CSPI03G37760	Cucurbita pepo (Zucchini)	cpecpiB857
CSPI03G37760	Cucurbita pepo (Zucchini)	cpecpiB866