CSPI03G31980 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G31980
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTransmembrane protein, putative
LocationChr3 : 28719420 .. 28720160 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGATTCCTTCTTTATTTCTTCCCTCATTCCTATTTCCATTTGATTCATTTAAACCTTCTATTTGTAATGAGCAGCAATAGCAATAAACCCATCTTCACAGTTGTGTCAACACCATCACTATGAAACACTCAAAACCAAAACTTAAACAACCAAGCCTATGGACAAGAATTACTCAAATTGGGCACAGGCTGTAGCCACTGCTTGGTGTTTCATGATGCTGTTAGGCCTTTTGTGTTGTTGTCTAAGCACCAATCCTCGCCACCACGATGACTCCTCCGCCGCTAATTCTAGCTGCACTTGCGACGGCGGTTATGCAGGTGTTTGATTCTACCATATGGATATAGATACAGAAATAGATATGTTTTTCTTTTTCAGTTTCATATCTGATTCTTTTGTTTTGGTTTTGCTGTGATCGGGAGTTTTGGTTTGTTGATTATTATTATCTATTGTAAATAGAAACTGGAATTCAGAGTGTTCTTTTTTCTTTTTTCCTTTGTTTTTCCTCTTAATGGTCACACCATCATCAGTATAGAATTGCTTCAAATCAATTGATTGATTCTATTTTATGTAAAGAGTACTGTAATCAAATCGATTTGATGGCCGGAACTGTTGGCCTTTGATTTGGGGAGTTTTGACACCTTTAGAGCCAAAAGAACAGAGTTGCTCCGAGGAGGTGATCGGCCGCCATGGATTTTATTTTGTTTTCTTTTACTTTGAACTGAAAGCTGATTGATTTGGAA

mRNA sequence

ATGGACAAGAATTACTCAAATTGGGCACAGGCTGTAGCCACTGCTTGGTGTTTCATGATGCTGTTAGGCCTTTTGTGTTGTTGTCTAAGCACCAATCCTCGCCACCACGATGACTCCTCCGCCGCTAATTCTAGCTGCACTTGCGACGGCGGTTATGCAGGTGTTTGA

Coding sequence (CDS)

ATGGACAAGAATTACTCAAATTGGGCACAGGCTGTAGCCACTGCTTGGTGTTTCATGATGCTGTTAGGCCTTTTGTGTTGTTGTCTAAGCACCAATCCTCGCCACCACGATGACTCCTCCGCCGCTAATTCTAGCTGCACTTGCGACGGCGGTTATGCAGGTGTTTGA
Homology
[Close]
BLAST of CSPI03G31980 vs. TrEMBL
Match: A0A151RTS3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_032503 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.0e-11
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 

Query: 4  NYSNWAQAVATAWCFMMLLGLLCCCLSTNPRHHDDSSAANSSCTCDGG 52
          NY +WAQA+A+AW FM+L+ L+CCCLST PRH  D  + N  CTCDGG
Sbjct: 3  NYLSWAQALASAWGFMLLVALMCCCLSTKPRHDSDIISGNGGCTCDGG 50

[Close]
BLAST of CSPI03G31980 vs. TrEMBL
Match: A0A067JNY5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25112 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.8e-11
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1 

Query: 3  KNYSNWAQAVATAWCFMMLLGLLCCCLSTNPRHHDDSSAAN--SSCTCDGGYAGV 56
          ++Y NW QA+A+AW  M+L+GL+CCCLST PR H D +       CTCDGGYA V
Sbjct: 2  EHYKNWIQAIASAWGLMLLIGLMCCCLSTKPRQHGDVNGGGGIGGCTCDGGYARV 56

[Close]
BLAST of CSPI03G31980 vs. TrEMBL
Match: A0A072U1K2_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_7g064080 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-10
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 3  KNYSNWAQAVATAWCFMMLLGLLCCCLSTNPRHHDDSSAANSSCTCDGGYAG 55
          KNY  W + +ATAW FM+L+ LLCCCLST PR   D  + N  CTCDGG  G
Sbjct: 2  KNYLRWLEGLATAWGFMLLVALLCCCLSTKPRQDGDDISGNGGCTCDGGGHG 53

[Close]
BLAST of CSPI03G31980 vs. TrEMBL
Match: A0A0L9U6M7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g146600 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.7e-10
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 3  KNYSNWAQAVATAWCFMMLLGLLCCCLSTNPRHHDDSSAANSSCTCDGG 52
          +NY +WAQA+A+AW FM+++ L+CCCLST PR   D  + N  CTCDGG
Sbjct: 2  ENYLSWAQALASAWGFMLVVALMCCCLSTKPRQDSDLLSGNGGCTCDGG 50

[Close]
BLAST of CSPI03G31980 vs. NCBI nr
Match: gi|1012334586|gb|KYP45942.1| (hypothetical protein KK1_032503 [Cajanus cajan])

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-11
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 

Query: 4  NYSNWAQAVATAWCFMMLLGLLCCCLSTNPRHHDDSSAANSSCTCDGG 52
          NY +WAQA+A+AW FM+L+ L+CCCLST PRH  D  + N  CTCDGG
Sbjct: 3  NYLSWAQALASAWGFMLLVALMCCCLSTKPRHDSDIISGNGGCTCDGG 50

[Close]
BLAST of CSPI03G31980 vs. NCBI nr
Match: gi|643710341|gb|KDP24548.1| (hypothetical protein JCGZ_25112 [Jatropha curcas])

HSP 1 Score: 73.9 bits (180), Expect = 9.7e-11
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1 

Query: 3  KNYSNWAQAVATAWCFMMLLGLLCCCLSTNPRHHDDSSAAN--SSCTCDGGYAGV 56
          ++Y NW QA+A+AW  M+L+GL+CCCLST PR H D +       CTCDGGYA V
Sbjct: 2  EHYKNWIQAIASAWGLMLLIGLMCCCLSTKPRQHGDVNGGGGIGGCTCDGGYARV 56

[Close]
BLAST of CSPI03G31980 vs. NCBI nr
Match: gi|922344174|ref|XP_013449006.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-10
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 3  KNYSNWAQAVATAWCFMMLLGLLCCCLSTNPRHHDDSSAANSSCTCDGGYAG 55
          KNY  W + +ATAW FM+L+ LLCCCLST PR   D  + N  CTCDGG  G
Sbjct: 2  KNYLRWLEGLATAWGFMLLVALLCCCLSTKPRQDGDDISGNGGCTCDGGGHG 53

[Close]
BLAST of CSPI03G31980 vs. NCBI nr
Match: gi|920694859|gb|KOM38084.1| (hypothetical protein LR48_Vigan03g146600 [Vigna angularis])

HSP 1 Score: 70.9 bits (172), Expect = 8.2e-10
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 3  KNYSNWAQAVATAWCFMMLLGLLCCCLSTNPRHHDDSSAANSSCTCDGG 52
          +NY +WAQA+A+AW FM+++ L+CCCLST PR   D  + N  CTCDGG
Sbjct: 2  ENYLSWAQALASAWGFMLVVALMCCCLSTKPRQDSDLLSGNGGCTCDGG 50

The following BLAST results are available for this feature:
BLAST of CSPI03G31980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G31980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151RTS3_CAJCA4.0e-1162.50Uncharacterized protein OS=Cajanus cajan GN=KK1_032503 PE=4 SV=1[more]
A0A067JNY5_JATCU6.8e-1156.36Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25112 PE=4 SV=1[more]
A0A072U1K2_MEDTR3.4e-1057.69Transmembrane protein, putative OS=Medicago truncatula GN=MTR_7g064080 PE=4 SV=1[more]
A0A0L9U6M7_PHAAN5.7e-1057.14Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g146600 PE=4 SV=1[more]
BLAST of CSPI03G31980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G31980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012334586|gb|KYP45942.1|5.7e-1162.50hypothetical protein KK1_032503 [Cajanus cajan][more]
gi|643710341|gb|KDP24548.1|9.7e-1156.36hypothetical protein JCGZ_25112 [Jatropha curcas][more]
gi|922344174|ref|XP_013449006.1|4.8e-1057.69transmembrane protein, putative [Medicago truncatula][more]
gi|920694859|gb|KOM38084.1|8.2e-1057.14hypothetical protein LR48_Vigan03g146600 [Vigna angularis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G31980.1CSPI03G31980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G31980Lsi03G021410Bottle gourd (USVL1VR-Ls)cpilsiB185
CSPI03G31980Bhi11G001906Wax gourdcpiwgoB237
CSPI03G31980CmaCh14G001140Cucurbita maxima (Rimu)cmacpiB242
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G31980Silver-seed gourdcarcpiB0019
CSPI03G31980Silver-seed gourdcarcpiB0181
CSPI03G31980Silver-seed gourdcarcpiB0478
CSPI03G31980Silver-seed gourdcarcpiB0612
CSPI03G31980Silver-seed gourdcarcpiB1035
CSPI03G31980Cucumber (Chinese Long) v3cpicucB130
CSPI03G31980Cucumber (Chinese Long) v3cpicucB144
CSPI03G31980Cucumber (Chinese Long) v3cpicucB168
CSPI03G31980Cucumber (Chinese Long) v3cpicucB186
CSPI03G31980Watermelon (97103) v2cpiwmbB190
CSPI03G31980Watermelon (97103) v2cpiwmbB196
CSPI03G31980Watermelon (97103) v2cpiwmbB204
CSPI03G31980Watermelon (97103) v2cpiwmbB207
CSPI03G31980Watermelon (97103) v2cpiwmbB254
CSPI03G31980Wax gourdcpiwgoB316
CSPI03G31980Wax gourdcpiwgoB331
CSPI03G31980Wax gourdcpiwgoB336
CSPI03G31980Wild cucumber (PI 183967)cpicpiB019
CSPI03G31980Wild cucumber (PI 183967)cpicpiB134
CSPI03G31980Cucumber (Gy14) v1cgycpiB054
CSPI03G31980Cucumber (Gy14) v1cgycpiB193
CSPI03G31980Cucumber (Gy14) v1cgycpiB255
CSPI03G31980Cucumber (Gy14) v1cgycpiB278
CSPI03G31980Cucurbita maxima (Rimu)cmacpiB291
CSPI03G31980Cucurbita maxima (Rimu)cmacpiB465
CSPI03G31980Cucurbita maxima (Rimu)cmacpiB665
CSPI03G31980Cucurbita maxima (Rimu)cmacpiB709
CSPI03G31980Cucurbita maxima (Rimu)cmacpiB827
CSPI03G31980Cucurbita maxima (Rimu)cmacpiB873
CSPI03G31980Cucurbita moschata (Rifu)cmocpiB230
CSPI03G31980Cucurbita moschata (Rifu)cmocpiB281
CSPI03G31980Cucurbita moschata (Rifu)cmocpiB452
CSPI03G31980Cucurbita moschata (Rifu)cmocpiB657
CSPI03G31980Cucurbita moschata (Rifu)cmocpiB701
CSPI03G31980Cucurbita moschata (Rifu)cmocpiB815
CSPI03G31980Cucurbita moschata (Rifu)cmocpiB853
CSPI03G31980Cucumber (Chinese Long) v2cpicuB105
CSPI03G31980Cucumber (Chinese Long) v2cpicuB120
CSPI03G31980Cucumber (Chinese Long) v2cpicuB157
CSPI03G31980Melon (DHL92) v3.5.1cpimeB180
CSPI03G31980Melon (DHL92) v3.5.1cpimeB196
CSPI03G31980Melon (DHL92) v3.5.1cpimeB216
CSPI03G31980Melon (DHL92) v3.5.1cpimeB255
CSPI03G31980Watermelon (Charleston Gray)cpiwcgB196
CSPI03G31980Watermelon (Charleston Gray)cpiwcgB202
CSPI03G31980Watermelon (Charleston Gray)cpiwcgB220
CSPI03G31980Watermelon (Charleston Gray)cpiwcgB224
CSPI03G31980Watermelon (97103) v1cpiwmB199
CSPI03G31980Watermelon (97103) v1cpiwmB212
CSPI03G31980Watermelon (97103) v1cpiwmB266
CSPI03G31980Watermelon (97103) v1cpiwmB276
CSPI03G31980Cucurbita pepo (Zucchini)cpecpiB063
CSPI03G31980Cucurbita pepo (Zucchini)cpecpiB390
CSPI03G31980Cucurbita pepo (Zucchini)cpecpiB481
CSPI03G31980Cucurbita pepo (Zucchini)cpecpiB600
CSPI03G31980Cucurbita pepo (Zucchini)cpecpiB862
CSPI03G31980Bottle gourd (USVL1VR-Ls)cpilsiB172
CSPI03G31980Bottle gourd (USVL1VR-Ls)cpilsiB183
CSPI03G31980Bottle gourd (USVL1VR-Ls)cpilsiB195
CSPI03G31980Melon (DHL92) v3.6.1cpimedB173
CSPI03G31980Melon (DHL92) v3.6.1cpimedB190
CSPI03G31980Melon (DHL92) v3.6.1cpimedB210
CSPI03G31980Melon (DHL92) v3.6.1cpimedB251
CSPI03G31980Silver-seed gourdcarcpiB0293
CSPI03G31980Cucumber (Gy14) v2cgybcpiB022
CSPI03G31980Cucumber (Gy14) v2cgybcpiB110
CSPI03G31980Cucumber (Gy14) v2cgybcpiB165
CSPI03G31980Cucumber (Gy14) v2cgybcpiB214
CSPI03G31980Cucumber (Gy14) v2cgybcpiB271