CSPI03G30590 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G30590
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 27997665 .. 27998414 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGCAGGCATGCAGAAAAGAAGATGATTGATGATGTGTCCAAGCATTTTGAAGAAGTAGTCATTTGCATGTTATTGTAAGTATAAACACAACTAAAATGTTCGTAGTAGTCAAGTATTGTTTAGTGATCATTTAGTTTTAGCTATGCATAATCCACGTTTATTTCACTTTTTTAGATAAGAAAGTACAAGTGGATACCCCAAAAAATTATTGTAAAATTCGATATTATTATGTTGCAAATAATTAAGAGTTGGGGTTAGATGGATTAGAAAAAAAAATGTTTTTTTTTATAAATATATTAATTCCAGTGTAAACTCCGATTTTAAAAGTTATTTGGAGTCCAAAATGACTTAAAATTAAAGATAAAAAATATATAATTGAGCAAACGTGCACCATACATCTTTTCTTTCTACTTCTGATGTCATGCGAAGCACTAAGGAACTATTTTATTTGTTAAATATTTTAACTATTAGGCCTTTTCTTTTCTTCTGTAGACCCTCCCACGCTCCCCACCACCAACTACTGCACCCAACCCACCCCCGTCAGACGCCGCTCCTTCACCACGAAGTCTCTGCGGCTGCCAAACGAACCATTTCTGCGACGGTACTGGTGATCCACAACAATCTCAGACCTCCCGCGTTACGAGAACCACCAGCACGACGACCTCAGATCTGAGGTGGCTCCAGCCAGCAACGACGCCCGCCGCATTTCTCGACTACCCTCAGCCCGAACTAATTTGGATCCCT

mRNA sequence

ATGAGAAGCAGGCATGCAGAAAAGAAGATGATTGATGATGTGTCCAAGCATTTTGAAGAAACCCTCCCACGCTCCCCACCACCAACTACTGCACCCAACCCACCCCCGTCAGACGCCGCTCCTTCACCACGAAGTCTCTGCGGCTGCCAAACGAACCATTTCTGCGACGGTACTGGTGATCCACAACAATCTCAGACCTCCCGCGTTACGAGAACCACCAGCACGACGACCTCAGATCTGAGGTGGCTCCAGCCAGCAACGACGCCCGCCGCATTTCTCGACTACCCTCAGCCCGAACTAATTTGGATCCCT

Coding sequence (CDS)

ATGAGAAGCAGGCATGCAGAAAAGAAGATGATTGATGATGTGTCCAAGCATTTTGAAGAAACCCTCCCACGCTCCCCACCACCAACTACTGCACCCAACCCACCCCCGTCAGACGCCGCTCCTTCACCACGAAGTCTCTGCGGCTGCCAAACGAACCATTTCTGCGACGGTACTGGTGATCCACAACAATCTCAGACCTCCCGCGTTACGAGAACCACCAGCACGACGACCTCAGATCTGAGGTGGCTCCAGCCAGCAACGACGCCCGCCGCATTTCTCGACTACCCTCAGCCCGAACTAATTTGGATCCCT
Homology
[Close]
BLAST of CSPI03G30590 vs. TrEMBL
Match: A0A0A0LA20_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G728050 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD 60
           MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD
Sbjct: 1   MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD 60

Query: 61  PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP 105
           PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP
Sbjct: 61  PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP 104

[Close]
BLAST of CSPI03G30590 vs. NCBI nr
Match: gi|700203555|gb|KGN58688.1| (hypothetical protein Csa_3G728050 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.5e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD 60
           MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD
Sbjct: 1   MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD 60

Query: 61  PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP 105
           PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP
Sbjct: 61  PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP 104

The following BLAST results are available for this feature:
BLAST of CSPI03G30590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G30590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA20_CUCSA1.7e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G728050 PE=4 SV=1[more]
BLAST of CSPI03G30590 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G30590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203555|gb|KGN58688.1|2.5e-52100.00hypothetical protein Csa_3G728050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G30590.1CSPI03G30590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G30590Csa3G728050Cucumber (Chinese Long) v2cpicuB120
CSPI03G30590CsaV3_3G033060Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G30590Silver-seed gourdcarcpiB0181
CSPI03G30590Silver-seed gourdcarcpiB0313
CSPI03G30590Silver-seed gourdcarcpiB1035
CSPI03G30590Cucumber (Chinese Long) v3cpicucB159
CSPI03G30590Watermelon (97103) v2cpiwmbB190
CSPI03G30590Watermelon (97103) v2cpiwmbB207
CSPI03G30590Wax gourdcpiwgoB219
CSPI03G30590Wax gourdcpiwgoB331
CSPI03G30590Wild cucumber (PI 183967)cpicpiB106
CSPI03G30590Cucumber (Gy14) v1cgycpiB182
CSPI03G30590Cucumber (Gy14) v1cgycpiB278
CSPI03G30590Cucurbita maxima (Rimu)cmacpiB242
CSPI03G30590Cucurbita maxima (Rimu)cmacpiB665
CSPI03G30590Cucurbita maxima (Rimu)cmacpiB827
CSPI03G30590Cucurbita maxima (Rimu)cmacpiB872
CSPI03G30590Cucurbita moschata (Rifu)cmocpiB230
CSPI03G30590Cucurbita moschata (Rifu)cmocpiB657
CSPI03G30590Cucurbita moschata (Rifu)cmocpiB815
CSPI03G30590Cucumber (Chinese Long) v2cpicuB132
CSPI03G30590Melon (DHL92) v3.5.1cpimeB216
CSPI03G30590Watermelon (Charleston Gray)cpiwcgB196
CSPI03G30590Watermelon (Charleston Gray)cpiwcgB224
CSPI03G30590Watermelon (97103) v1cpiwmB199
CSPI03G30590Watermelon (97103) v1cpiwmB266
CSPI03G30590Cucurbita pepo (Zucchini)cpecpiB063
CSPI03G30590Cucurbita pepo (Zucchini)cpecpiB486
CSPI03G30590Cucurbita pepo (Zucchini)cpecpiB600
CSPI03G30590Cucurbita pepo (Zucchini)cpecpiB862
CSPI03G30590Bottle gourd (USVL1VR-Ls)cpilsiB168
CSPI03G30590Bottle gourd (USVL1VR-Ls)cpilsiB185
CSPI03G30590Melon (DHL92) v3.6.1cpimedB210
CSPI03G30590Cucumber (Gy14) v2cgybcpiB110
CSPI03G30590Cucumber (Gy14) v2cgybcpiB165