CSPI03G29910 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G29910
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionEmb|CAB66922.1
LocationChr3 : 27396396 .. 27396866 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGGAGTCAACCATATAATTTTCCCCCGCCATTTCACTTCCGTCCATTCACCGGTGATTCTTGCAGATCTGAGAAGAACAAGAATGCCGGTGAAGGTAGTGGACGCCATCCTCTCCGACGTCAATGCTGACAAACTCCAAAACAACAAACCTACTTTCATCCTCTTATTGGCTGCCACATCTCTCAGCTTGTTGGCTTCTGTTTGTCTGAAAGGAACATGGTTGGACATTTGGGTAGACCACAAGTTTATCCATTATGAAGATGGAATAGTTGATAAAAGTATAACGCTTTTTATCACATGGTTCATTAGAATTTTGGCTACTTTTCTTATTCTTCATTGTTCTTTGGATCCGTTGTTGGCAATAGGAGTTCTGATATGTGGAATGATGGCTTCATCACAGTTGATAAAAATATTGAAGGCTCATGTCAAATTTATTCAAATCTTTCAAGGAAACCTTCAAGACTAA

mRNA sequence

ATGTTAGGAGTCAACCATATAATTTTCCCCCGCCATTTCACTTCCGTCCATTCACCGGTGATTCTTGCAGATCTGAGAAGAACAAGAATGCCGGTGAAGGTAGTGGACGCCATCCTCTCCGACGTCAATGCTGACAAACTCCAAAACAACAAACCTACTTTCATCCTCTTATTGGCTGCCACATCTCTCAGCTTGTTGGCTTCTGTTTGTCTGAAAGGAACATGGTTGGACATTTGGGTAGACCACAAGTTTATCCATTATGAAGATGGAATAGTTGATAAAAGTATAACGCTTTTTATCACATGGTTCATTAGAATTTTGGCTACTTTTCTTATTCTTCATTGTTCTTTGGATCCGTTGTTGGCAATAGGAGTTCTGATATGTGGAATGATGGCTTCATCACAGTTGATAAAAATATTGAAGGCTCATGTCAAATTTATTCAAATCTTTCAAGGAAACCTTCAAGACTAA

Coding sequence (CDS)

ATGTTAGGAGTCAACCATATAATTTTCCCCCGCCATTTCACTTCCGTCCATTCACCGGTGATTCTTGCAGATCTGAGAAGAACAAGAATGCCGGTGAAGGTAGTGGACGCCATCCTCTCCGACGTCAATGCTGACAAACTCCAAAACAACAAACCTACTTTCATCCTCTTATTGGCTGCCACATCTCTCAGCTTGTTGGCTTCTGTTTGTCTGAAAGGAACATGGTTGGACATTTGGGTAGACCACAAGTTTATCCATTATGAAGATGGAATAGTTGATAAAAGTATAACGCTTTTTATCACATGGTTCATTAGAATTTTGGCTACTTTTCTTATTCTTCATTGTTCTTTGGATCCGTTGTTGGCAATAGGAGTTCTGATATGTGGAATGATGGCTTCATCACAGTTGATAAAAATATTGAAGGCTCATGTCAAATTTATTCAAATCTTTCAAGGAAACCTTCAAGACTAA
Homology
[Close]
BLAST of CSPI03G29910 vs. TrEMBL
Match: A0A0A0LD37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G701570 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-12
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1 

Query: 60  ATSLSLLASVCLKGTWLDIWVDHKFIHYEDGIVDKSITLFI-TWFIRILATFLILHCSLD 119
           A +  L+A +   GTWL  WV HKF+  E+G+++K+I+ F+ +  I+ILATFLIL CSLD
Sbjct: 290 ALATFLIAIILPIGTWLGFWVAHKFVDRENGLIEKNISHFVVSTSIQILATFLILKCSLD 349

Query: 120 PLLAIGVLICGMMASSQLIKILKAHVKFIQ 149
           P+LA G LICG MAS     I K  +  +Q
Sbjct: 350 PILATGGLICGTMASIMTSNIFKFQLNLLQ 379

[Close]
BLAST of CSPI03G29910 vs. TrEMBL
Match: A0A0K9QN67_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_160430 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1 

Query: 62  SLSLLASVCLKGTWLDIWVDHKFIHYEDGIVDKSITLFITWFIRILATFLILHCSLDPLL 121
           ++ LL  + L G WL  WV HK +  E+G++D +++ F+ W IRIL   +IL CSLDPLL
Sbjct: 253 AIFLLLFIALVGAWLGFWVVHKLVLTEEGLIDTTVSQFVVWSIRILGAVMILQCSLDPLL 312

Query: 122 AIGVLICGMMASSQLIKILKAHV 145
           A    +  +  SS L K+++  V
Sbjct: 313 AAEAFVSAIFISSILRKVIRPKV 335

[Close]
BLAST of CSPI03G29910 vs. TrEMBL
Match: M0ZUT7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003330 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1 

Query: 33  KVVDAILSDVNADKLQNNKPTFILLLAATSLSLLASVCLKGTWLDIWVDHKFIHYEDGIV 92
           +++ +IL ++   +   N      LL   ++ LL  + + G WL  WV HK +  EDG +
Sbjct: 244 QLLRSILREIGVGEDMYNPDDTDRLLLQLAIFLLLFLVIAGAWLGFWVVHKLVLAEDGSI 303

Query: 93  DKSITLFITWFIRILATFLILHCSLDPLLAIGVLICGMMASSQLIKILKAHVKFIQIFQG 152
           D  ++ F+ W IR LA+ LIL  S+DPLL     ICG++ SS L ++ +   K++  F  
Sbjct: 304 DTGVSQFVAWSIRFLASALILQSSVDPLLCAEAWICGVLISSILRRLCRP--KYVLRFFK 363

Query: 153 NL 155
           NL
Sbjct: 364 NL 363

[Close]
BLAST of CSPI03G29910 vs. TrEMBL
Match: W9RER7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016270 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.1e-09
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 1 

Query: 65  LLASVCLKGTWLDIWVDHKFIHYEDGIVDKSITLFITWFIRILATFLILHCSLDPLLAIG 124
           L+  + L G WL  WV HK I  EDG +D S +LF+ W IRIL+  LIL  S+DP+LA  
Sbjct: 206 LVVFLILAGGWLAFWVVHKHIPTEDGSIDTSTSLFVAWSIRILSALLILQSSVDPMLATE 265

Query: 125 VLICGMMASSQLIKILK 142
            LI GM+ SS L  I +
Sbjct: 266 ALIFGMITSSILRSIFR 282

[Close]
BLAST of CSPI03G29910 vs. TrEMBL
Match: A0A067KAP3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12549 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.1e-09
Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 1 

Query: 62  SLSLLASVCLKGTWLDIWVDHKFIHYEDGIVDKSITLFITWFIRILATFLILHCSLDPLL 121
           ++ +LA V L G W+  W   K +  EDG VD S   F+ W IRILA  +IL  SLDPLL
Sbjct: 263 AIFMLAFVVLAGAWMGFWAVRKLVLTEDGSVDISTAHFVAWSIRILAIIMILQSSLDPLL 322

Query: 122 AIGVLICGMMASSQLIKI------LKAHVKFIQIFQGNLQ 156
           AI  L+ G++ SS L K+      L+ + KF++ F  N+Q
Sbjct: 323 AIEALMSGVVLSSVLQKVFRLRFLLRVYKKFLK-FIRNIQ 361

[Close]
BLAST of CSPI03G29910 vs. TAIR10
Match: AT5G67610.2 (AT5G67610.2 Uncharacterized conserved protein (DUF2215))

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1 

Query: 67  ASVCLKGTWLDIWVDHKFIHYEDGIVDKSITLFITWFIRILATFLILHCSLDPLLAIGVL 126
           A + L G +   W   K I  EDG +D S +LF++W IRI+A  LIL  S+DPLLA G L
Sbjct: 278 AFLSLGGAFFGFWTVRKLILTEDGSIDVSTSLFVSWSIRIMAAVLILQSSVDPLLAGGAL 337

Query: 127 ICGMMASSQLIKILKAHVKFI 148
           I  ++ SS L KI +  +KF+
Sbjct: 338 ISVILMSSTLKKITR--LKFL 356

[Close]
BLAST of CSPI03G29910 vs. TAIR10
Match: AT3G49840.1 (AT3G49840.1 Uncharacterized conserved protein (DUF2215))

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1 

Query: 62  SLSLLASVCLKGTWLDIWVDHKFIHYEDGIVDKSITLFITWFIRILATFLILHCSLDPLL 121
           ++ L+  V + G W   W   KF+  +DG VD S ++F++W IR  A  LIL  SLDPLL
Sbjct: 266 AILLVVFVFMLGAWSGFWTVKKFVVTKDGSVDISTSIFVSWSIRAFAVALILQSSLDPLL 325

Query: 122 AIGVLICGMMAS 134
           A G LI G++ S
Sbjct: 326 AGGALITGILIS 337

[Close]
BLAST of CSPI03G29910 vs. NCBI nr
Match: gi|659123658|ref|XP_008461773.1| (PREDICTED: uncharacterized protein LOC103500297 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 5.5e-19
Identity = 49/82 (59.76%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 60  ATSLSLLASVCLKGTWLDIWVDHKFIHYEDGIVDKSITLFITWFIRILATFLILHCSLDP 119
           A  + LLA + L GTWL   V HK++H++DG+VD +++LF++WFI+ILATFLIL CSLDP
Sbjct: 319 ALKIFLLAFIFLIGTWLGFCVVHKYVHHDDGLVDSTVSLFVSWFIQILATFLILQCSLDP 378

Query: 120 LLAIGVLICGMMASSQLIKILK 142
           LLA GVLICG++ SS L +I K
Sbjct: 379 LLATGVLICGLLTSSMLRRIFK 400

[Close]
BLAST of CSPI03G29910 vs. NCBI nr
Match: gi|659123664|ref|XP_008461776.1| (PREDICTED: uncharacterized protein LOC103500299 isoform X1 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 1 

Query: 65  LLASVCLKGTWLDIWVDHKFIHYEDGIVDKSITLFITWFIRILATFLILHCSLDPLLAIG 124
           LLA + L G WL  WV HKF+  EDG +D S +LF+TW IRILA+ LIL CSLDPLLA G
Sbjct: 327 LLAFIFLIGAWLGFWVVHKFVLDEDGSIDTSTSLFVTWSIRILASLLILQCSLDPLLATG 386

Query: 125 VLICGMMASSQLIKILK 142
           VLICG++ASS L KI K
Sbjct: 387 VLICGIVASSMLRKIFK 403

[Close]
BLAST of CSPI03G29910 vs. NCBI nr
Match: gi|778682844|ref|XP_011651793.1| (PREDICTED: uncharacterized protein LOC101210632 isoform X1 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 1 

Query: 65  LLASVCLKGTWLDIWVDHKFIHYEDGIVDKSITLFITWFIRILATFLILHCSLDPLLAIG 124
           LLA + L G WL  WV HKFI  EDG ++ S +LF+TW IRILA+ LIL CS+DPLLA G
Sbjct: 327 LLAFIFLVGAWLGFWVVHKFILDEDGSINTSTSLFVTWSIRILASLLILQCSVDPLLATG 386

Query: 125 VLICGMMASSQLIKILK 142
           VLICG++ASS L KI K
Sbjct: 387 VLICGIVASSMLRKIFK 403

[Close]
BLAST of CSPI03G29910 vs. NCBI nr
Match: gi|778688760|ref|XP_011652833.1| (PREDICTED: uncharacterized protein LOC105435121 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1 

Query: 60  ATSLSLLASVCLKGTWLDIWVDHKFIHYEDGIVDKSITLFI-TWFIRILATFLILHCSLD 119
           A +  L+A +   GTWL  WV HKF+  E+G+++K+I+ F+ +  I+ILATFLIL CSLD
Sbjct: 290 ALATFLIAIILPIGTWLGFWVAHKFVDRENGLIEKNISHFVVSTSIQILATFLILKCSLD 349

Query: 120 PLLAIGVLICGMMASSQLIKILKAHVKFIQ 149
           P+LA G LICG MAS     I K  +  +Q
Sbjct: 350 PILATGGLICGTMASIMTSNIFKFQLNLLQ 379

[Close]
BLAST of CSPI03G29910 vs. NCBI nr
Match: gi|1009145367|ref|XP_015890297.1| (PREDICTED: uncharacterized protein LOC107424919 [Ziziphus jujuba])

HSP 1 Score: 72.8 bits (177), Expect = 6.1e-10
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 1 

Query: 56  LLLAATSLSLLASVCLKGTWLDIWVDHKFIHYEDGIVDKSITLFITWFIRILATFLILHC 115
           + L   ++ LLA V L G WL  WV  K +  EDG +D S ++F+ W IRILA  +IL  
Sbjct: 3   IFLEELAIFLLAFVILGGAWLGFWVVRKLVLTEDGSIDLSTSMFVAWSIRILAAVMILQS 62

Query: 116 SLDPLLAIGVLICGMMASSQLIKILKAHV 145
           S DPLLA+  L  G+M SS L ++LK  V
Sbjct: 63  SADPLLAMEALAFGIMVSSILRRVLKLRV 91

The following BLAST results are available for this feature:
BLAST of CSPI03G29910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G29910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD37_CUCSA2.6e-1248.89Uncharacterized protein OS=Cucumis sativus GN=Csa_3G701570 PE=4 SV=1[more]
A0A0K9QN67_SPIOL1.6e-0940.96Uncharacterized protein OS=Spinacia oleracea GN=SOVF_160430 PE=4 SV=1[more]
M0ZUT7_SOLTU2.1e-0934.43Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003330 PE=4 SV=1[more]
W9RER7_9ROSA6.1e-0949.35Uncharacterized protein OS=Morus notabilis GN=L484_016270 PE=4 SV=1[more]
A0A067KAP3_JATCU6.1e-0943.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12549 PE=4 SV=1[more]
BLAST of CSPI03G29910 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G67610.21.1e-0945.68 Uncharacterized conserved protein (DUF2215)[more]
AT3G49840.12.4e-0944.44 Uncharacterized conserved protein (DUF2215)[more]
BLAST of CSPI03G29910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123658|ref|XP_008461773.1|5.5e-1959.76PREDICTED: uncharacterized protein LOC103500297 [Cucumis melo][more]
gi|659123664|ref|XP_008461776.1|5.1e-1764.94PREDICTED: uncharacterized protein LOC103500299 isoform X1 [Cucumis melo][more]
gi|778682844|ref|XP_011651793.1|2.5e-1663.64PREDICTED: uncharacterized protein LOC101210632 isoform X1 [Cucumis sativus][more]
gi|778688760|ref|XP_011652833.1|3.8e-1248.89PREDICTED: uncharacterized protein LOC105435121 [Cucumis sativus][more]
gi|1009145367|ref|XP_015890297.1|6.1e-1046.07PREDICTED: uncharacterized protein LOC107424919 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019358NEMP_fam
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G29910.1CSPI03G29910.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019358NEMP familyPFAMPF10225DUF2215coord: 73..151
score: 5.3
NoneNo IPR availablePANTHERPTHR31587FAMILY NOT NAMEDcoord: 65..144
score: 1.0
NoneNo IPR availablePANTHERPTHR31587:SF2SUBFAMILY NOT NAMEDcoord: 65..144
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G29910Cucurbita pepo (Zucchini)cpecpiB138
CSPI03G29910Cucurbita pepo (Zucchini)cpecpiB313
CSPI03G29910Cucurbita pepo (Zucchini)cpecpiB546
CSPI03G29910Cucurbita pepo (Zucchini)cpecpiB601
CSPI03G29910Bottle gourd (USVL1VR-Ls)cpilsiB171
CSPI03G29910Bottle gourd (USVL1VR-Ls)cpilsiB181
CSPI03G29910Melon (DHL92) v3.6.1cpimedB174
CSPI03G29910Melon (DHL92) v3.6.1cpimedB193
CSPI03G29910Cucumber (Gy14) v2cgybcpiB110
CSPI03G29910Cucumber (Gy14) v2cgybcpiB313
CSPI03G29910Silver-seed gourdcarcpiB0390
CSPI03G29910Silver-seed gourdcarcpiB0488
CSPI03G29910Silver-seed gourdcarcpiB0797
CSPI03G29910Silver-seed gourdcarcpiB0850
CSPI03G29910Cucumber (Chinese Long) v3cpicucB144
CSPI03G29910Cucumber (Chinese Long) v3cpicucB191
CSPI03G29910Watermelon (97103) v2cpiwmbB185
CSPI03G29910Watermelon (97103) v2cpiwmbB268
CSPI03G29910Wax gourdcpiwgoB221
CSPI03G29910Wax gourdcpiwgoB353
CSPI03G29910Wild cucumber (PI 183967)cpicpiB142
CSPI03G29910Cucumber (Gy14) v1cgycpiB031
CSPI03G29910Cucumber (Gy14) v1cgycpiB278
CSPI03G29910Cucurbita maxima (Rimu)cmacpiB243
CSPI03G29910Cucurbita maxima (Rimu)cmacpiB365
CSPI03G29910Cucurbita maxima (Rimu)cmacpiB456
CSPI03G29910Cucurbita maxima (Rimu)cmacpiB904
CSPI03G29910Cucurbita moschata (Rifu)cmocpiB231
CSPI03G29910Cucurbita moschata (Rifu)cmocpiB356
CSPI03G29910Cucurbita moschata (Rifu)cmocpiB444
CSPI03G29910Cucurbita moschata (Rifu)cmocpiB884
CSPI03G29910Cucumber (Chinese Long) v2cpicuB120
CSPI03G29910Melon (DHL92) v3.5.1cpimeB199
CSPI03G29910Watermelon (Charleston Gray)cpiwcgB188
CSPI03G29910Watermelon (Charleston Gray)cpiwcgB191
CSPI03G29910Watermelon (97103) v1cpiwmB192
CSPI03G29910Watermelon (97103) v1cpiwmB194