CSPI03G28840 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G28840
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 26429941 .. 26430395 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTTGGACTCAGTTGGGCTGAAGAAGTATTGGGATATGTATGAAATGGGGTGGGGTATTTAGAAGTTGAGCCCAAGAAATGTATTTAGAATGGGCCTAATAGACGGAGGGTACACAAATGAAGCCGACGTTTCTCGTCTCCGATTATTTTATTGAAGTTTGGTTTGTCCACAGTTATAGAGAGCTTAGTCCCTGAAACGACCAGATCTGCATTTCCTCTCTTCTTCGGGGTTGAGACTTTGAGAGTTCTTCACATCAATCAAAACGCATCAAGCTTCTCGAGATCTAATTTCACTCCTCAACCTCCACACCAAATCAGGTACTTTCTTCACTTCTCCTTCTCACCTCCAACCTAGATCTGATATATTCTTCAATTCAATCTCCCTTTCATCTCAATTCTCTTCCACCCCCTCCTCTTTCACTTTTCTTCAGATCTCTTATCCCAAACGATA

mRNA sequence

ATGTGTTTGGACTCAGTTGGGCTGAAGAAGTATTGGGATATGTATGAAATGGGGTGGGTTATAGAGAGCTTAGTCCCTGAAACGACCAGATCTGCATTTCCTCTCTTCTTCGGGGTTGAGACTTTGAGAGTTCTTCACATCAATCAAAACGCATCAAGCTTCTCGAGATCTAATTTCACTCCTCAACCTCCACACCAAATCAGGTACTTTCTTCACTTCTCCTTCTCACCTCCAACCTAG

Coding sequence (CDS)

ATGTGTTTGGACTCAGTTGGGCTGAAGAAGTATTGGGATATGTATGAAATGGGGTGGGTTATAGAGAGCTTAGTCCCTGAAACGACCAGATCTGCATTTCCTCTCTTCTTCGGGGTTGAGACTTTGAGAGTTCTTCACATCAATCAAAACGCATCAAGCTTCTCGAGATCTAATTTCACTCCTCAACCTCCACACCAAATCAGGTACTTTCTTCACTTCTCCTTCTCACCTCCAACCTAG
Homology
[Close]
BLAST of CSPI03G28840 vs. TrEMBL
Match: A0A0A0L9L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651780 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.9e-39
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 1 

Query: 1  MCLDSVGLKKYWDMYEMGWVIESLVPETTRSAFPLFFGVETLRVLHINQNASSFSRSNFT 60
          MCLDSVGLKKYWDMYEMGWV ESLVPETTRSAFPLFFGVETLRVLHINQNASSFSRSNFT
Sbjct: 1  MCLDSVGLKKYWDMYEMGWVTESLVPETTRSAFPLFFGVETLRVLHINQNASSFSRSNFT 60

Query: 61 PQPPHQIRYFLHFSFSPPT 80
          PQPPH+IRYFLHFSFSPPT
Sbjct: 61 PQPPHRIRYFLHFSFSPPT 79

[Close]
BLAST of CSPI03G28840 vs. NCBI nr
Match: gi|700203360|gb|KGN58493.1| (hypothetical protein Csa_3G651780 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 7.1e-39
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 1 

Query: 1  MCLDSVGLKKYWDMYEMGWVIESLVPETTRSAFPLFFGVETLRVLHINQNASSFSRSNFT 60
          MCLDSVGLKKYWDMYEMGWV ESLVPETTRSAFPLFFGVETLRVLHINQNASSFSRSNFT
Sbjct: 1  MCLDSVGLKKYWDMYEMGWVTESLVPETTRSAFPLFFGVETLRVLHINQNASSFSRSNFT 60

Query: 61 PQPPHQIRYFLHFSFSPPT 80
          PQPPH+IRYFLHFSFSPPT
Sbjct: 61 PQPPHRIRYFLHFSFSPPT 79

The following BLAST results are available for this feature:
BLAST of CSPI03G28840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G28840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9L5_CUCSA4.9e-3997.47Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651780 PE=4 SV=1[more]
BLAST of CSPI03G28840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G28840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203360|gb|KGN58493.1|7.1e-3997.47hypothetical protein Csa_3G651780 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G28840.1CSPI03G28840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G28840Csa3G651780Cucumber (Chinese Long) v2cpicuB120
CSPI03G28840CsaV3_3G031240Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G28840Cucurbita pepo (Zucchini)cpecpiB561
CSPI03G28840Cucurbita pepo (Zucchini)cpecpiB603
CSPI03G28840Bottle gourd (USVL1VR-Ls)cpilsiB232
CSPI03G28840Melon (DHL92) v3.6.1cpimedB216
CSPI03G28840Cucumber (Gy14) v2cgybcpiB110
CSPI03G28840Silver-seed gourdcarcpiB0130
CSPI03G28840Silver-seed gourdcarcpiB0230
CSPI03G28840Cucumber (Chinese Long) v3cpicucB133
CSPI03G28840Watermelon (97103) v2cpiwmbB248
CSPI03G28840Wax gourdcpiwgoB288
CSPI03G28840Cucumber (Gy14) v1cgycpiB303
CSPI03G28840Cucurbita maxima (Rimu)cmacpiB245
CSPI03G28840Cucurbita maxima (Rimu)cmacpiB450
CSPI03G28840Cucurbita moschata (Rifu)cmocpiB234
CSPI03G28840Cucurbita moschata (Rifu)cmocpiB438
CSPI03G28840Melon (DHL92) v3.5.1cpimeB222
CSPI03G28840Watermelon (Charleston Gray)cpiwcgB262
CSPI03G28840Watermelon (97103) v1cpiwmB216