CSPI03G28760 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G28760
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	Chr3 : 26372213 .. 26372893 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGGGGAGTGGATGTCATTCTTGGTATGCAATGGCTACATACATTAGGAGTAACCGAAGTAGATTGGTGAAAACTTACTTTGACATTCATACAAAATGGGAAGAAGGTTGTATTGAGGGGAGATCCGAGTCATACGAAGGCTAGGGTGAGTTTGAAGCACATGATGAAGACATGGACAGAACTTGATCAGGGATTTCTGATTGAGTGTGGATCTTTGGAAGGTGGAATGGCATTTGCAGCGATGTATGGGGTTGATGAAGTGCCTACCACTCATGAGTCTATTCCAGCCGTGTTAGCTAAGAATGAAGATGTTTTTGATTGGCCTGGAGAGTTGCCACCACAATGTACCATTGAACATCATATACATCTTAAGAAGGGGACTAATCCAGTCTATGTTCGGCCTTATAGATATGCATACCAGCAAAAGGAGGAGATGGAAAGATTGGTTGATGAAGTGATGGCATTTGGCATAAAAACCTAGTACTAGTCCATATTCGAGCCCGGTCTTGTTGGTGAAAAAAAAATGGTAGTTGACGGTTTTGTGTAGATTACCGTGCGTTGAATAGTGTGACCGTTCCAGACAAGTTTCCTATTCCAGTAGTAGAGGAATTGTTTGATGAACTTAATGGGGCTAATATATTTTCGAAGATTGATCTCAAGGCGGGATATCATCAAATTAG

mRNA sequence

ATGATGAAGACATGGACAGAACTTGATCAGGGATTTCTGATTGAGTGTGGATCTTTGGAAGGTGGAATGGCATTTGCAGCGATGTATGGGGTTGATGAAGTGCCTACCACTCATGAGTCTATTCCAGCCGTGTTAGCTAAGAATGAAGATGTTTTTGATTGGCCTGGAGAGTTGCCACCACAATGTACCATTGAACATCATATACATCTTAAGAAGGGGACTAATCCAGTCTATGTTCGGCCTTATAGATATGCATACCAGCAAAAGGAGGAGATGGAAAGATTGGTTGATGAAGTGATGGCATTTGGCATAAAAACCTAG

Coding sequence (CDS)

ATGATGAAGACATGGACAGAACTTGATCAGGGATTTCTGATTGAGTGTGGATCTTTGGAAGGTGGAATGGCATTTGCAGCGATGTATGGGGTTGATGAAGTGCCTACCACTCATGAGTCTATTCCAGCCGTGTTAGCTAAGAATGAAGATGTTTTTGATTGGCCTGGAGAGTTGCCACCACAATGTACCATTGAACATCATATACATCTTAAGAAGGGGACTAATCCAGTCTATGTTCGGCCTTATAGATATGCATACCAGCAAAAGGAGGAGATGGAAAGATTGGTTGATGAAGTGATGGCATTTGGCATAAAAACCTAG

Homology

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BLAST of CSPI03G28760 vs. TrEMBL
Match: E5GB27_CUCME (Ty3-gypsy retroelement transposase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.0e-24
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 1   MMKTWTELDQGFLIECGSLEGGMAFAAMYGVDEVPTTHESIPAVLAKNEDVFDWPGELPP 60
           ++K+W   DQGFL+EC +++G +A   +Y  +   T   +I  +L K EDVF+W   LPP
Sbjct: 108 IVKSWVGEDQGFLVECQAIKGNVAMEELYKEESELTVDNAISPLLRKFEDVFEWLETLPP 167

Query: 61  QCTIEHHIHLKKGTNPVYVRPYRYAYQQKEEMERLVDE 99
           +  IEHHIHLK+GTNPV VRPY YAYQQKEEMER+ DE
Sbjct: 168 KRGIEHHIHLKQGTNPVDVRPYHYAYQQKEEMERVFDE 205

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BLAST of CSPI03G28760 vs. TrEMBL
Match: A5AJJ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043900 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-12
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 15  ECGSLEG--GMAFAAMYGVDEVPTT--HESIPAVLAKNEDVFDWPGELPPQCTIEHHIHL 74
           +C S E   G A  A+Y  +E  +T   + +  ++   +D+F  P +LPPQ  IEH I L
Sbjct: 382 QCLSKEARQGHALFAIYATEEGNSTPVQQELKELIEAFDDIFQAPSQLPPQRDIEHQITL 441

Query: 75  KKGTNPVYVRPYRYAYQQKEEMERLVDEVMAFGI 105
           K+GT+P+ VRPYRYAY QK+E+ER V +++  G+
Sbjct: 442 KEGTDPINVRPYRYAYFQKDEIERQVSDMLNSGL 475

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BLAST of CSPI03G28760 vs. TrEMBL
Match: A5BZW2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040537 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-12
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 15  ECGSLEG--GMAFAAMYGVDEVPTT--HESIPAVLAKNEDVFDWPGELPPQCTIEHHIHL 74
           +C S E   G A  A+Y  +E  +T   + +  ++   +D+F  P +LPPQ  IEH I L
Sbjct: 394 QCLSKEARQGHALFAIYATEEGNSTPVQQELKELIEAFDDIFQAPSQLPPQRDIEHQITL 453

Query: 75  KKGTNPVYVRPYRYAYQQKEEMERLVDEVMAFGI 105
           K+GT+P+ VRPYRYAY QK+E+ER V +++  G+
Sbjct: 454 KEGTDPINVRPYRYAYFQKDEIERQVSDMLNSGL 487

[Close]

BLAST of CSPI03G28760 vs. TrEMBL
Match: J3SDF5_BETVU (Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 1


Query: 1   MMKTWTELDQGFLIECGSLEGGMAFAAMYGVDEVPTTHESIPAVLA----KNEDVFDWPG 60
           M++T  +   G  +EC  +E G A     G        + IP  L     + E VF+ P 
Sbjct: 617 MLRTLRKEGGGLWLECNQVEAGGA-----GSIRDSKVEQEIPPFLQELMRRFEGVFETPV 676

Query: 61  ELPPQCTIEHHIHLKKGTNPVYVRPYRYAYQQKEEMERLVDEVMAFGI 105
            LPP+   EH I LK+G+NPV VRPYRY   QK+E+ERL+ E++A GI
Sbjct: 677 GLPPRRGHEHAIVLKEGSNPVGVRPYRYPQFQKDEIERLIKEMLAAGI 719

[Close]

BLAST of CSPI03G28760 vs. TrEMBL
Match: A5C9A7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020633 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1


Query: 37  THESIPAVLAKNEDVFDWPGELPPQCTIEHHIHLKKGTNPVYVRPYRYAYQQKEEMERLV 96
           T   +  +L + EDVF  P +LPP   I+HHI LK+GT P+ VRPYRYAY QK E+E+  
Sbjct: 426 TQPXMQQILGEFEDVFQEPFKLPPLREIDHHIPLKEGTQPINVRPYRYAYFQKAEIEKQK 485

Query: 97  DEVMAF 103
           D+   F
Sbjct: 486 DDTWRF 491

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BLAST of CSPI03G28760 vs. NCBI nr
Match: gi|307135777|gb|ADN33669.1| (ty3-gypsy retroelement transposase [Cucumis melo subsp. melo])

HSP 1 Score: 118.2 bits (295), Expect = 8.6e-24
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 1   MMKTWTELDQGFLIECGSLEGGMAFAAMYGVDEVPTTHESIPAVLAKNEDVFDWPGELPP 60
           ++K+W   DQGFL+EC +++G +A   +Y  +   T   +I  +L K EDVF+W   LPP
Sbjct: 108 IVKSWVGEDQGFLVECQAIKGNVAMEELYKEESELTVDNAISPLLRKFEDVFEWLETLPP 167

Query: 61  QCTIEHHIHLKKGTNPVYVRPYRYAYQQKEEMERLVDE 99
           +  IEHHIHLK+GTNPV VRPY YAYQQKEEMER+ DE
Sbjct: 168 KRGIEHHIHLKQGTNPVDVRPYHYAYQQKEEMERVFDE 205

[Close]

BLAST of CSPI03G28760 vs. NCBI nr
Match: gi|659113889|ref|XP_008456800.1| (PREDICTED: uncharacterized protein LOC103496640 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-19
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 1


Query: 1   MMKTWTELDQGFLIECGSLEGGMAFAAMYGVDEVPTTHES---IPAVLAKNEDVFDWPGE 60
           M KTW   D+GFLIEC ++E            ++ T H     +  +L + EDVF+WP +
Sbjct: 161 MFKTWGNQDKGFLIECKAVEVCEEIEQC----KIGTVHLKTGPVQMMLKQFEDVFEWPEQ 220

Query: 61  LPPQCTIEHHIHLKKGTNPVYVRPYRYAYQQKEEMERLVDEVMA 102
           LPP+  IEH+I+LK+GTNP+ VRPYRY YQQK EMERLV+E+++
Sbjct: 221 LPPRREIEHYIYLKEGTNPINVRPYRYGYQQKAEMERLVEEMLS 260

[Close]

BLAST of CSPI03G28760 vs. NCBI nr
Match: gi|731410617|ref|XP_010657629.1| (PREDICTED: uncharacterized protein LOC104880969 [Vitis vinifera])

HSP 1 Score: 78.6 bits (192), Expect = 7.5e-12
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 15  ECGSLEG--GMAFAAMYGVDEVPTT--HESIPAVLAKNEDVFDWPGELPPQCTIEHHIHL 74
           +C S E   G A  A+Y  +E  +T   + +  ++   +D+F  P +LPPQ  IEH I L
Sbjct: 414 QCLSKEARQGHALFAIYATEEGNSTPVQQELKELIEAFDDIFQAPSQLPPQRDIEHQITL 473

Query: 75  KKGTNPVYVRPYRYAYQQKEEMERLVDEVMAFGI 105
           K+GT+P+ VRPYRYAY QK+E+ER V +++  G+
Sbjct: 474 KEGTDPINVRPYRYAYFQKDEIERQVSDMLNSGL 507

[Close]

BLAST of CSPI03G28760 vs. NCBI nr
Match: gi|147779107|emb|CAN73467.1| (hypothetical protein VITISV_043900 [Vitis vinifera])

HSP 1 Score: 78.6 bits (192), Expect = 7.5e-12
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 15  ECGSLEG--GMAFAAMYGVDEVPTT--HESIPAVLAKNEDVFDWPGELPPQCTIEHHIHL 74
           +C S E   G A  A+Y  +E  +T   + +  ++   +D+F  P +LPPQ  IEH I L
Sbjct: 382 QCLSKEARQGHALFAIYATEEGNSTPVQQELKELIEAFDDIFQAPSQLPPQRDIEHQITL 441

Query: 75  KKGTNPVYVRPYRYAYQQKEEMERLVDEVMAFGI 105
           K+GT+P+ VRPYRYAY QK+E+ER V +++  G+
Sbjct: 442 KEGTDPINVRPYRYAYFQKDEIERQVSDMLNSGL 475

[Close]

BLAST of CSPI03G28760 vs. NCBI nr
Match: gi|731440391|ref|XP_010646564.1| (PREDICTED: uncharacterized protein LOC104878232 [Vitis vinifera])

HSP 1 Score: 78.6 bits (192), Expect = 7.5e-12
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 15  ECGSLEG--GMAFAAMYGVDEVPTT--HESIPAVLAKNEDVFDWPGELPPQCTIEHHIHL 74
           +C S E   G A  A+Y  +E  +T   + +  ++   +D+F  P +LPPQ  IEH I L
Sbjct: 472 QCLSKEARQGHALFAIYATEEGNSTPVQQELKELIEAFDDIFQAPSQLPPQRDIEHQITL 531

Query: 75  KKGTNPVYVRPYRYAYQQKEEMERLVDEVMAFGI 105
           K+GT+P+ VRPYRYAY QK+E+ER V +++  G+
Sbjct: 532 KEGTDPINVRPYRYAYFQKDEIERQVSDMLNSGL 565

The following BLAST results are available for this feature:

BLAST of CSPI03G28760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G28760 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB27_CUCME	6.0e-24	55.10	Ty3-gypsy retroelement transposase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5AJJ1_VITVI	5.2e-12	42.55	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043900 PE=4 SV=1	[more]
A5BZW2_VITVI	5.2e-12	42.55	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040537 PE=4 SV=1	[more]
J3SDF5_BETVU	2.2e-10	40.74	Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1	[more]
A5C9A7_VITVI	1.4e-09	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020633 PE=4 SV=1	[more]

BLAST of CSPI03G28760 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G28760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135777\|gb\|ADN33669.1\|	8.6e-24	55.10	ty3-gypsy retroelement transposase [Cucumis melo subsp. melo]	[more]
gi\|659113889\|ref\|XP_008456800.1\|	1.3e-19	49.04	PREDICTED: uncharacterized protein LOC103496640 [Cucumis melo]	[more]
gi\|731410617\|ref\|XP_010657629.1\|	7.5e-12	42.55	PREDICTED: uncharacterized protein LOC104880969 [Vitis vinifera]	[more]
gi\|147779107\|emb\|CAN73467.1\|	7.5e-12	42.55	hypothetical protein VITISV_043900 [Vitis vinifera]	[more]
gi\|731440391\|ref\|XP_010646564.1\|	7.5e-12	42.55	PREDICTED: uncharacterized protein LOC104878232 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G28760.1	CSPI03G28760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 48..104 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G28760	Cucurbita maxima (Rimu)	cmacpiB245
CSPI03G28760	Cucurbita maxima (Rimu)	cmacpiB450
CSPI03G28760	Cucurbita moschata (Rifu)	cmocpiB234
CSPI03G28760	Cucurbita moschata (Rifu)	cmocpiB438
CSPI03G28760	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G28760	Watermelon (Charleston Gray)	cpiwcgB262
CSPI03G28760	Watermelon (97103) v1	cpiwmB216
CSPI03G28760	Cucurbita pepo (Zucchini)	cpecpiB561
CSPI03G28760	Cucurbita pepo (Zucchini)	cpecpiB603
CSPI03G28760	Bottle gourd (USVL1VR-Ls)	cpilsiB232
CSPI03G28760	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G28760	Silver-seed gourd	carcpiB0130
CSPI03G28760	Silver-seed gourd	carcpiB0230
CSPI03G28760	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G28760	Watermelon (97103) v2	cpiwmbB248
CSPI03G28760	Wax gourd	cpiwgoB288