CSPI03G28560 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G28560
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionC6HC-type zinc finger RING/U-box protein
LocationChr3 : 26197685 .. 26199187 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAACCATAACCATTCTGGATACCAATCGAAAGGAAGTTGTTAGGATTGTTTCTTTCTCGGCCGAGGGTACTGATTCGAAGACACATATCAATAAATCATCCACAAAAACCCAATAGTCGTCTTCCTATGATTCATTTCGAAAGGCTTTCCCTTCCCACCATCCCTTAAATTAATTCACCCTTTCAAACCCCCTTCCTCCACCACTTCAAATTTCTCTCTAATGGCCTCTTCTTCCTCTTCTTCTTCTATCCTCCTCCAAAATCTCTCCGATGAAAATTACGCAGAAGAGTTACAGCTTCAAGAAGTTATCACTTCCTCCTTATTATCCTCTCCAATTAATCCATCCCCAACACCCCACTCTTCTACCTCCCAACTTCTCTGTTCAATCTGTACAGACGCAAAATCCCATTCCCAAATGTTCACCAACAGGGTATGTACACATACATTCTGCACCGCTTGCATCTCAAACCACATCGCTGCAAAGCTTGAGGTTGCAATGGCAGTGAAGTGTCCGGAGCCGAATTGCGGGACGGTGCTGGAGCCGGAGATGTGTGGATCCTTCGTACCGAAGAGGGTTTTGGAGCGGTGGGCGGATGCTCTGTTTGAGGCGATGATTCTGAAGTGGAAGAGATTGAATTGTCCGTTTAAGGATTGTGGGGCGGCGATAATTGATGAAGGGGGTGAGGAAGGGGTGACGGCGGTGGAATGTGGGAGTTGTTGGAGGTTGTTTTGTGCAGAATGTAGAGTGGGATGGCATGGGGAAATGGAATGTGGAGAGTTTCAGAGACTGAGGAAAGAGGCGGGTGTAAGTGGAGATAAAGATGATGCGATGACAGTGAAACTAGCTGAGAACAAGAAATGGAGGAGATGTCCTCATTGTAAAATTTATGTTGAGAAGACTGTTGGTTGTGTTCATATCGTCTGCAGGTTTGTTCTCTAATTTACCCTTTTACTTTTTGGTTACTATGCTTCCAATTAATTCTCAACCTAGTTTGTGTTTAAATTGTAGAGCTATATGTGGATGACCTTGTCATGATTCAAAGGGATAGGTTGTATGGGTTTGGTATCTGGGGTTGGGTTAGGACGAAAAACTAAGGGCAGTTAAATCAAATATTAATATAATAGAGAAGAGCATACATAAAATAAGTATGAAGATAAGTTGTATATGGTGCAGTATTTATAATTAAGAATAAGATGCAATTGATGGAGATCTTAATTGAATAATGAAATTTGTAGGTGTGGATCGGATTTTTGCTACAGCTGTGGAGCTAAGTGGGGTGGTGGTCATGCTTGTAAGGCTTCAGCTTATGAACGTACTGTCTATCGACGTTGATTACAACCCATCTTTCATCCATATGCATGAATTCAAAATTGTTAGAATTTCATTTTAATGTTTTAACAGTTGGATTTTAAAACTAAATTTTCAGATTTTATTGAACAGGCATAACTAGATGTTCAATGGTATGTTATGAAATGAAATAAAACAAGATGTTAAAAAGTT

mRNA sequence

ATGGCCTCTTCTTCCTCTTCTTCTTCTATCCTCCTCCAAAATCTCTCCGATGAAAATTACGCAGAAGAGTTACAGCTTCAAGAAGTTATCACTTCCTCCTTATTATCCTCTCCAATTAATCCATCCCCAACACCCCACTCTTCTACCTCCCAACTTCTCTGTTCAATCTGTACAGACGCAAAATCCCATTCCCAAATGTTCACCAACAGGGTATGTACACATACATTCTGCACCGCTTGCATCTCAAACCACATCGCTGCAAAGCTTGAGGTTGCAATGGCAGTGAAGTGTCCGGAGCCGAATTGCGGGACGGTGCTGGAGCCGGAGATGTGTGGATCCTTCGTACCGAAGAGGGTTTTGGAGCGGTGGGCGGATGCTCTGTTTGAGGCGATGATTCTGAAGTGGAAGAGATTGAATTGTCCGTTTAAGGATTGTGGGGCGGCGATAATTGATGAAGGGGGTGAGGAAGGGGTGACGGCGGTGGAATGTGGGAGTTGTTGGAGGTTGTTTTGTGCAGAATGTAGAGTGGGATGGCATGGGGAAATGGAATGTGGAGAGTTTCAGAGACTGAGGAAAGAGGCGGGTGTAAGTGGAGATAAAGATGATGCGATGACAGTGAAACTAGCTGAGAACAAGAAATGGAGGAGATGTCCTCATTGTAAAATTTATGTTGAGAAGACTGTTGGTTGTGTTCATATCGTCTGCAGGTGTGGATCGGATTTTTGCTACAGCTGTGGAGCTAAGTGGGGTGGTGGTCATGCTTGTAAGGCTTCAGCTTATGAACGTACTGTCTATCGACGTTGA

Coding sequence (CDS)

ATGGCCTCTTCTTCCTCTTCTTCTTCTATCCTCCTCCAAAATCTCTCCGATGAAAATTACGCAGAAGAGTTACAGCTTCAAGAAGTTATCACTTCCTCCTTATTATCCTCTCCAATTAATCCATCCCCAACACCCCACTCTTCTACCTCCCAACTTCTCTGTTCAATCTGTACAGACGCAAAATCCCATTCCCAAATGTTCACCAACAGGGTATGTACACATACATTCTGCACCGCTTGCATCTCAAACCACATCGCTGCAAAGCTTGAGGTTGCAATGGCAGTGAAGTGTCCGGAGCCGAATTGCGGGACGGTGCTGGAGCCGGAGATGTGTGGATCCTTCGTACCGAAGAGGGTTTTGGAGCGGTGGGCGGATGCTCTGTTTGAGGCGATGATTCTGAAGTGGAAGAGATTGAATTGTCCGTTTAAGGATTGTGGGGCGGCGATAATTGATGAAGGGGGTGAGGAAGGGGTGACGGCGGTGGAATGTGGGAGTTGTTGGAGGTTGTTTTGTGCAGAATGTAGAGTGGGATGGCATGGGGAAATGGAATGTGGAGAGTTTCAGAGACTGAGGAAAGAGGCGGGTGTAAGTGGAGATAAAGATGATGCGATGACAGTGAAACTAGCTGAGAACAAGAAATGGAGGAGATGTCCTCATTGTAAAATTTATGTTGAGAAGACTGTTGGTTGTGTTCATATCGTCTGCAGGTGTGGATCGGATTTTTGCTACAGCTGTGGAGCTAAGTGGGGTGGTGGTCATGCTTGTAAGGCTTCAGCTTATGAACGTACTGTCTATCGACGTTGA
Homology
[Close]
BLAST of CSPI03G28560 vs. Swiss-Prot
Match: R144A_XENTR (Probable E3 ubiquitin-protein ligase RNF144A OS=Xenopus tropicalis GN=rnf144a PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-17
Identity = 56/200 (28.00%), Postives = 92/200 (46.00%), Query Frame = 1 

Query: 54  CSICTDAKSHSQMFTNRVCTHTFCTACISNHIAAKLEVAM--AVKCPEPNC---GTVLEP 113
           C +C    +  QM T   C   FCT C+  ++   ++  +  A+ CP+ +C   G + E 
Sbjct: 20  CKLCLGEYTVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDASCPKRGHLQEN 79

Query: 114 EMCGSFVPKRVLERWADALFEAMILKWK-RLNCPFKDCGAAI-IDEGGEEGVTAVECGSC 173
           E+    V   +++++    FE  IL    R  CP   C A   + E G +    V+C +C
Sbjct: 80  EI-ECMVAAEIMQKYKKLQFEKEILLDPCRTWCPSSSCQAVCKLQEKGIQNPQLVQCSAC 139

Query: 174 WRLFCAECRVGWHGEMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEK 233
              FC+ C+  WH    C E   +    G S     +    L ++   +RCP CK+Y+E+
Sbjct: 140 DIEFCSACKANWHPGQGCPENMAITFLPGDSS----SFFKSLEDDVPIKRCPKCKVYIER 199

Query: 234 TVGCVHIVCR-CGSDFCYSC 246
             GC  ++C+ C   FC+ C
Sbjct: 200 DEGCAQMMCKNCKHAFCWYC 214

[Close]
BLAST of CSPI03G28560 vs. Swiss-Prot
Match: R144B_MOUSE (E3 ubiquitin-protein ligase RNF144B OS=Mus musculus GN=Rnf144b PE=2 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-16
Identity = 56/200 (28.00%), Postives = 86/200 (43.00%), Query Frame = 1 

Query: 54  CSICTDAKSHSQMFTNRVCTHTFCTACISNHIAAKLEVAMA--VKCPEPNC---GTVLEP 113
           C +C   +S  +M   + C   FCT C+  ++   +       + CP+  C   GT+ E 
Sbjct: 30  CKLCLCEQSLDKMTMLQECQCIFCTPCLKQYMVLSIREGCGSPITCPDMVCLNHGTLQET 89

Query: 114 EMCGSFVPKRVLERWADALFEAMI-LKWKRLNCPFKDCGAAIIDEGGEEGVTA-VECGSC 173
           E+    VP    + +    FE  + +   R  CP  DC        G+ G    VEC SC
Sbjct: 90  EIA-CLVPLDEFQLYQRLKFEREVHMDPLRTWCPVADCQTVCHISAGDPGQPVLVECPSC 149

Query: 174 WRLFCAECRVGWHGEMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEK 233
              FC+ C+  WH E  C + Q    E G     D    +        ++CP C+IY+E+
Sbjct: 150 HLKFCSCCKDAWHEESSCRDSQSAMPEHGALFGTDADAPI--------KQCPVCRIYIER 209

Query: 234 TVGCVHIVCR-CGSDFCYSC 246
             GC  ++C+ C   FC+ C
Sbjct: 210 NEGCAQMMCKNCKHTFCWYC 220

[Close]
BLAST of CSPI03G28560 vs. Swiss-Prot
Match: R1441_DANRE (Probable E3 ubiquitin-protein ligase RNF144A-A OS=Danio rerio GN=rnf144aa PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-16
Identity = 57/206 (27.67%), Postives = 87/206 (42.23%), Query Frame = 1 

Query: 54  CSICTDAKSHSQMFTNRVCTHTFCTACISNHIAAKLEVAM--AVKCPEPNC---GTVLEP 113
           C +C       QM T   C   FCT C+  ++   ++     A+ CP+  C   G + E 
Sbjct: 20  CKLCLGEFPLEQMTTITQCQCVFCTMCLKQYVELLIKEGFETAISCPDSACPKRGHLQEN 79

Query: 114 EMCGSFVPKRVLERWADALFEA-MILKWKRLNCPFKDCGAAI-IDEGGEEGVTAVECGSC 173
           E+    V   +++R+    FE  ++L   R  CP   C A   + E        V C  C
Sbjct: 80  EI-ECMVATEIMQRYRKLQFEKEVLLDPSRTWCPSSTCQAVCQLKESDTVLPQLVRCSVC 139

Query: 174 WRLFCAECRVGWHGEMECGE------FQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHC 233
              FC+ C+  WH + +C E      F      +    D DDA           +RCP C
Sbjct: 140 TLEFCSACKASWHPDQDCQENVPITSFLPGESSSFFKADDDDAPI---------KRCPKC 199

Query: 234 KIYVEKTVGCVHIVCR-CGSDFCYSC 246
           K+Y+E+  GC  ++C+ C   FC+ C
Sbjct: 200 KVYIERDEGCAQMMCKNCKHAFCWYC 215

[Close]
BLAST of CSPI03G28560 vs. Swiss-Prot
Match: R144A_HUMAN (E3 ubiquitin-protein ligase RNF144A OS=Homo sapiens GN=RNF144A PE=1 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-16
Identity = 56/205 (27.32%), Postives = 90/205 (43.90%), Query Frame = 1 

Query: 54  CSICTDAKSHSQMFTNRVCTHTFCTACISNHIAAKLEVAM--AVKCPEPNC---GTVLEP 113
           C +C       QM T   C   FCT C+  ++   ++  +  A+ CP+  C   G + E 
Sbjct: 20  CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 79

Query: 114 EMCGSFVPKRVLERWADALFEAMILKWK-RLNCPFKDCGAAI-IDEGGEEGVTAVECGSC 173
           E+    V   +++R+    FE  +L    R  CP   C A   + + G +    V+C +C
Sbjct: 80  EI-ECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKAC 139

Query: 174 WRLFCAECRVGWHGEMECGEFQRL-----RKEAGVSGDKDDAMTVKLAENKKWRRCPHCK 233
              FC+ C+  WH    C E   +        A    ++DDA           +RCP CK
Sbjct: 140 RMEFCSTCKASWHPGQGCPETMPITFLPGETSAAFKMEEDDAPI---------KRCPKCK 199

Query: 234 IYVEKTVGCVHIVCR-CGSDFCYSC 246
           +Y+E+  GC  ++C+ C   FC+ C
Sbjct: 200 VYIERDEGCAQMMCKNCKHAFCWYC 214

[Close]
BLAST of CSPI03G28560 vs. Swiss-Prot
Match: DEAHB_ARATH (ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-15
Identity = 50/199 (25.13%), Postives = 81/199 (40.70%), Query Frame = 1 

Query: 51   QLLCSICTDAKSHSQMFTNRVCTHTFCTACISNHIAAKLEV--AMAVKCPEPNCGTVLEP 110
            +L C IC         ++   C+H FC AC+     A +    A  + C   +CG  +  
Sbjct: 1558 ELECPICLSEVDDG--YSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVV 1617

Query: 111  EMCGSFVPKRVLERWADALFEAMILK--WKRLNCPFKDCGAAIIDEGGEEGVTAVECGSC 170
                + + +  L+    A   A +     K   C   DC +     G +E      CG+C
Sbjct: 1618 ADMRALLSQEKLDELISASLSAFVTSSDGKLRFCSTPDCPSIYRVAGPQESGEPFICGAC 1677

Query: 171  WRLFCAECRVGWHGEMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEK 230
                C  C + +H  + C  +++ +       +  D      A+ K  + CP CK  +EK
Sbjct: 1678 HSETCTRCHLEYHPLITCERYKKFK-------ENPDLSLKDWAKGKDVKECPICKSTIEK 1737

Query: 231  TVGCVHIVCRCGSDFCYSC 246
            T GC H+ CRCG   C++C
Sbjct: 1738 TDGCNHLQCRCGKHICWTC 1747

[Close]
BLAST of CSPI03G28560 vs. TrEMBL
Match: A0A0A0L952_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G646570 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 4.3e-156
Identity = 265/266 (99.62%), Postives = 266/266 (100.00%), Query Frame = 1 

Query: 2   ASSSSSSSILLQNLSDENYAEELQLQEVITSSLLSSPINPSPTPHSSTSQLLCSICTDAK 61
           +SSSSSSSILLQNLSDENYAEELQLQEVITSSLLSSPINPSPTPHSSTSQLLCSICTDAK
Sbjct: 4   SSSSSSSSILLQNLSDENYAEELQLQEVITSSLLSSPINPSPTPHSSTSQLLCSICTDAK 63

Query: 62  SHSQMFTNRVCTHTFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLE 121
           SHSQMFTNRVCTHTFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLE
Sbjct: 64  SHSQMFTNRVCTHTFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLE 123

Query: 122 RWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHGE 181
           RWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHGE
Sbjct: 124 RWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHGE 183

Query: 182 MECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSDF 241
           MECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSDF
Sbjct: 184 MECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSDF 243

Query: 242 CYSCGAKWGGGHACKASAYERTVYRR 268
           CYSCGAKWGGGHACKASAYERTVYRR
Sbjct: 244 CYSCGAKWGGGHACKASAYERTVYRR 269

[Close]
BLAST of CSPI03G28560 vs. TrEMBL
Match: A0A0A0KSV5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650600 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 3.3e-63
Identity = 119/216 (55.09%), Postives = 147/216 (68.06%), Query Frame = 1 

Query: 54  CSICTDAKSHSQMFTNRVCTHTFCTACISNHIAAKLEVAMA-VKCPEPNCGTVLEPEMCG 113
           C+ICTD K+   MFTN  C+H+FC  CISNHIAAKLE  +A VKCP+P C  VL P++C 
Sbjct: 11  CNICTDDKALVNMFTNHECSHSFCKDCISNHIAAKLEDNIANVKCPQPGCEAVLHPDVCH 70

Query: 114 SFVPKRVLERWADALFEAMILKWKRL-NCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFC 173
           SFVPK VL+RW   L EA IL   RL  CPF DC  A+ID+G +E     EC  C R+FC
Sbjct: 71  SFVPKNVLDRWGYVLCEAFILGNHRLIYCPFMDCSVALIDDG-DEATKEAECPGCNRMFC 130

Query: 174 AECRVGWHGEMECGEFQRLRKEAGVSGDKDD-AMTVKLAENKKWRRCPHCKIYVEKTVGC 233
           A+C V WHG +EC EFQ+L  E     ++DD  + +KLAE + W+RCPHC+ YVE   GC
Sbjct: 131 AKCNVVWHGGVECEEFQKLCLE---EKERDDHLLAIKLAEQENWKRCPHCRTYVEMIEGC 190

Query: 234 VHIVCRCGSDFCYSCGAKWGGGHACKASAYERTVYR 267
            +I+CRC + FCYSCGAKWGG HAC  SA  R  ++
Sbjct: 191 PYIICRCRTKFCYSCGAKWGGSHACPESAEARKYHK 222

[Close]
BLAST of CSPI03G28560 vs. TrEMBL
Match: I1KHH9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 242.3 bits (617), Expect = 6.9e-61
Identity = 119/264 (45.08%), Postives = 162/264 (61.36%), Query Frame = 1 

Query: 15  LSDENYAEELQLQEVITSSLLSS------------------PINPSPTPHSSTS----QL 74
           L DE  AE +QLQEV+ SSL+SS                  P+         T     Q+
Sbjct: 29  LYDEKCAEVVQLQEVLFSSLMSSTRITKEVIQIDVDVDCDTPLRILKGKQKETGECSRQV 88

Query: 75  LCSICTDAKSHSQMFTNRVCTHTFCTACISNHIAAKLEVAMA-VKCPEPNCGTVLEPEMC 134
            C IC DAK   +MF N+ C+H+FC  CI  ++A K++  ++ VKCP P C  V+EP+ C
Sbjct: 89  YCGICMDAKYGEEMFRNQNCSHSFCDDCIGRYVATKVQENISMVKCPHPKCKGVIEPQYC 148

Query: 135 GSFVPKRVLERWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFC 194
            SF+PK V +RW DAL E ++   ++  CPFKDC A +I++  EE VT  EC  C RLFC
Sbjct: 149 RSFIPKEVFDRWEDALCENLVPGSQKFYCPFKDCSAMLINDA-EEIVTVSECPHCNRLFC 208

Query: 195 AECRVGWHGEMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCV 254
           A+C+V WH  +EC EFQ L++      +++D M ++LA+NK W+RCP C  YVE+  GC 
Sbjct: 209 AQCKVSWHAGVECKEFQNLKE---YEREREDLMVMELAKNKNWKRCPKCSFYVERIDGCT 268

Query: 255 HIVCRCGSDFCYSCGAKWGGGHAC 256
           HI CRCG++FCY+CG+KWG  HAC
Sbjct: 269 HISCRCGNEFCYACGSKWGSHHAC 288

[Close]
BLAST of CSPI03G28560 vs. TrEMBL
Match: V4LDP4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10022329mg PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.9e-61
Identity = 114/265 (43.02%), Postives = 153/265 (57.74%), Query Frame = 1 

Query: 15  LSDENYAEELQLQEVITSSLLSSPINPSPTPHSST---------------------SQLL 74
           +SD NYA EL LQE + SSL++S    +  P   T                     S+ L
Sbjct: 24  ISDVNYATELHLQEALFSSLIASTAEINNNPQVKTNLATWIKQEPEIKIENESTEPSRKL 83

Query: 75  CSICTDAKSHSQMFTNRV-CTHTFCTACISNHIAAKL-EVAMAVKCPEPNCGTVLEPEMC 134
           C IC D K  S +F   + CTH++CT C   ++A+K+ E +  +KCP+  C  ++EP  C
Sbjct: 84  CMICMDEKPLSDIFRGTITCTHSYCTGCTIRYVASKIKENSARIKCPDVECTRLIEPYTC 143

Query: 135 GSFVPKRVLERWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFC 194
              +PK V ERW   L E++I  W +  CPFKDC A ++ +G    VT  EC SC RLFC
Sbjct: 144 RDLIPKDVFERWEKILCESLISSWDKFYCPFKDCSAMMVGDGNNANVTQTECPSCHRLFC 203

Query: 195 AECRVGWHGEMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCV 254
            +C+V WH  + C EFQ+       S D++DAM V++A+NK+WRRCP CK YVEK  GC+
Sbjct: 204 VQCKVTWHAGIGCEEFQKFGNTKKKSSDEEDAMLVQMAKNKQWRRCPSCKFYVEKVDGCM 263

Query: 255 HIVCRCGSDFCYSCGAKWGGGHACK 257
           HI CRCG  FCY CG+ W   HAC+
Sbjct: 264 HISCRCGFQFCYGCGSAWNSDHACR 288

[Close]
BLAST of CSPI03G28560 vs. TrEMBL
Match: A0A118JYS3_CYNCS (Zinc finger, C6HC-type OS=Cynara cardunculus var. scolymus GN=Ccrd_023885 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.9e-61
Identity = 124/252 (49.21%), Postives = 156/252 (61.90%), Query Frame = 1 

Query: 15  LSDENYAEELQLQEVITSSL------LSSPINPSPTPHSSTSQL---LCSICTDAKSHSQ 74
           +SDE YA +LQLQE + S+        SS          ++ QL    C IC D K+ S 
Sbjct: 30  ISDEKYAHQLQLQEALISASASLFQNASSSKKQRIEEEDASDQLHDSFCEICMDRKTASD 89

Query: 75  MFTN-RVCTHTFCTACISNHIAAKL-EVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLERW 134
           MF N  VC H FC  CI  H+AAK+ E    VKCPEP C  ++ PE+C S VPK+VL RW
Sbjct: 90  MFRNINVCGHLFCLDCIRRHVAAKIKENIPQVKCPEPKCKGIIGPEICRSIVPKQVLARW 149

Query: 135 ADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHGEME 194
            ++L E++IL   +  CPFKDC A ++D+GGE  VT+ EC +C RLFCA+CRV WH  M+
Sbjct: 150 EESLCESLILGSDKFYCPFKDCSAMLVDDGGET-VTSSECPNCNRLFCAQCRVVWHSGMD 209

Query: 195 CGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSDFCY 254
           C EFQ L K      D +D M ++LA+ KKWRRCP CK +VEK  GC+HI CRCG +FCY
Sbjct: 210 CREFQSLEKG---ERDPEDVMLMELAKKKKWRRCPRCKFFVEKAQGCLHISCRCGYEFCY 269

Query: 255 SCGAKWGGGHAC 256
            CG    G H C
Sbjct: 270 GCGLMHHGSHVC 277

[Close]
BLAST of CSPI03G28560 vs. TAIR10
Match: AT3G14250.1 (AT3G14250.1 RING/U-box superfamily protein)

HSP 1 Score: 232.6 bits (592), Expect = 2.8e-61
Identity = 112/266 (42.11%), Postives = 152/266 (57.14%), Query Frame = 1 

Query: 15  LSDENYAEELQLQEVITSSLLSSPI--NPSPTPHSST-------------------SQLL 74
           ++DE+YA E+ LQE + SS  +S +  N  P  H +                    S+ L
Sbjct: 35  IADESYATEIHLQEAMFSSFGASTVGVNHHPQVHRNLVTLVKQEPEIKAENEPMEPSRRL 94

Query: 75  CSICTDAKSHSQMFTNRV-CTHTFCTACISNHIAAKL-EVAMAVKCPEPNCGTVLEPEMC 134
           C IC D K  S +F     CTH +CT C   ++A K+ E A  +KCP+  C  ++EP  C
Sbjct: 95  CMICMDEKPSSDIFRGTTNCTHAYCTDCTVRYVATKIKENASRIKCPDVECTRLIEPYTC 154

Query: 135 GSFVPKRVLERWADALFEAMILKWKRLNCPFKDCGAAIID-EGGEEGVTAVECGSCWRLF 194
              +PK V +RW   L E++I  W +  CPFKDC A +++ E G+  VT  EC SC RLF
Sbjct: 155 RDLIPKDVFDRWEKILCESLISSWDKFYCPFKDCSAMMVNNENGDANVTQTECRSCHRLF 214

Query: 195 CAECRVGWHGEMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGC 254
           C +C+V WH  + C EFQR       S D+DDA+ +++A+NK+WRRCP CK YV+K  GC
Sbjct: 215 CVQCKVTWHAGIGCDEFQRFGNTKKKSSDEDDALLIQMAKNKQWRRCPSCKFYVDKVEGC 274

Query: 255 VHIVCRCGSDFCYSCGAKWGGGHACK 257
            HI CRCG  FCY CG+ W   HAC+
Sbjct: 275 QHIKCRCGYQFCYGCGSVWSSSHACQ 300

[Close]
BLAST of CSPI03G28560 vs. TAIR10
Match: AT3G53690.1 (AT3G53690.1 RING/U-box superfamily protein)

HSP 1 Score: 196.1 bits (497), Expect = 2.9e-50
Identity = 87/201 (43.28%), Postives = 123/201 (61.19%), Query Frame = 1 

Query: 47  SSTSQLLCSICTDAKSHSQMFTNRVCTHTFCTACISNHIAAKLEV-AMAVKCPEPNCGTV 106
           S T+   C IC D+KS  + F    C+H +C  C+S +IAAKL+   ++++CP   C   
Sbjct: 108 SKTATFDCEICVDSKSIIESFRIGGCSHFYCNDCVSKYIAAKLQDNILSIECPVSGCSGR 167

Query: 107 LEPEMCGSFVPKRVLERWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGS 166
           LEP+ C   +PK V +RW DAL EA++++ K+  CP+KDC A +  E  E  +   EC  
Sbjct: 168 LEPDQCRQILPKEVFDRWGDALCEAVVMRSKKFYCPYKDCSALVFLEESEVKMKDSECPH 227

Query: 167 CWRLFCAECRVGWHGEMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVE 226
           C R+ C EC   WH EM C EFQ+L   A     +DD +   +A+ KKW+RCP CK Y+E
Sbjct: 228 CHRMVCVECGTQWHPEMTCEEFQKL---AANERGRDDILLATMAKQKKWKRCPSCKFYIE 287

Query: 227 KTVGCVHIVCRCGSDFCYSCG 247
           K+ GC+++ CRCG  FCY+CG
Sbjct: 288 KSQGCLYMKCRCGLAFCYNCG 305

[Close]
BLAST of CSPI03G28560 vs. TAIR10
Match: AT5G60250.1 (AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 146.0 bits (367), Expect = 3.4e-35
Identity = 81/256 (31.64%), Postives = 120/256 (46.88%), Query Frame = 1 

Query: 6   SSSSILLQNLSDENYAEELQLQEVITSSLLSSPINPSPTPHSSTSQLL--CSICTDAKSH 65
           SS   +L   +D  +A +L  + ++      S + P   P  + + L   C+IC +    
Sbjct: 257 SSYQHVLVARNDVKFAYKLARESIL------SMVTPHEDPRQAKAVLKEECAICFNDIVA 316

Query: 66  SQMFTNRVCTHTFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLERW 125
             MF+   C H FC  C+  H+  KL   MA KCP   C + L  + CG  +  ++ + W
Sbjct: 317 EGMFSVDKCRHRFCFQCVKQHVEVKLLHGMAPKCPHDGCKSELVIDACGKLLTPKLSKLW 376

Query: 126 ADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAV----------ECGSCWRLFCAE 185
              L E  I   +R+ CP+  C A +      E   ++           C  C  LFC +
Sbjct: 377 QQRLQENAIPVTERVYCPYPRCSALMSKTKISESAKSLLSLYPKSGVRRCVECRGLFCVD 436

Query: 186 CRVGWHGEMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHI 245
           C+V WHG + C E+++L  E       DD     LA NK WR+C  C+  +E + GC HI
Sbjct: 437 CKVPWHGNLSCTEYKKLHPEPPA----DDVKLKSLANNKMWRQCGKCQHMIELSQGCNHI 496

Query: 246 VCRCGSDFCYSCGAKW 250
            CRCG +FCY+CG  W
Sbjct: 497 TCRCGHEFCYNCGGGW 502

[Close]
BLAST of CSPI03G28560 vs. TAIR10
Match: AT5G37560.1 (AT5G37560.1 RING/U-box superfamily protein)

HSP 1 Score: 146.0 bits (367), Expect = 3.4e-35
Identity = 76/253 (30.04%), Postives = 119/253 (47.04%), Query Frame = 1 

Query: 6   SSSSILLQNLSDENYAEELQLQEVITSSLLSSPINPSPTPHSSTSQLLCSICTDAKSHSQ 65
           +S+  +L    D+N+A  L +  ++ ++                  L CSIC+D      
Sbjct: 147 ASTGTVLVATRDDNFALRLAIDALVKAT--------------QEKPLTCSICSDKTDAEH 206

Query: 66  MFTNRVCTHTFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLERWAD 125
           M  N  C H  C +C+   +  KL   +   C E  C + L  E C   +  +++E W  
Sbjct: 207 MLLNDKCLHRHCFSCVKQQVKVKLRSGIVPPCLEDGCKSELTLESCSMVLTPKLIEMWKR 266

Query: 126 ALFEAMILKWKRLNCPFKDCG-----AAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHG 185
            + E +I   +++ CP++ C        +  E  +  V A  C  C  LFC +C+V WH 
Sbjct: 267 KMEEDLIPDAEKIYCPYRSCSMLMSKTELSREAEQSNVRA--CIKCSELFCIDCKVPWHS 326

Query: 186 EMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSD 245
           ++ C +++R+  E  V+    D M   LA ++ WR+C  CK  +E T GC HI CRCG +
Sbjct: 327 DLSCADYKRIHSERLVN----DMMLKVLANDQMWRQCSECKHMIELTEGCNHITCRCGYE 379

Query: 246 FCYSCGAKWGGGH 254
           FCY CG KW   H
Sbjct: 387 FCYRCGHKWTKYH 379

[Close]
BLAST of CSPI03G28560 vs. TAIR10
Match: AT3G45540.1 (AT3G45540.1 RING/U-box protein with C6HC-type zinc finger)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-32
Identity = 73/240 (30.42%), Postives = 120/240 (50.00%), Query Frame = 1 

Query: 19  NYAEELQLQEVITSSLLSSPINPSPTPHSSTSQLLCSICTDAK-SHSQMFTNRVCTHTFC 78
           +YA +L  + +++   +S  +NP   P  +T +  C IC D   + +QMF    C H FC
Sbjct: 68  SYAYKLARETIVSE--ISISVNPPRQP-KATRKTTCKICLDDDINENQMFCVGKCRHRFC 127

Query: 79  TACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLERWADALFEAMILKWKR 138
           + C+  HI  +L     ++CP   C T L+   C + +  ++ E W   + E +I    R
Sbjct: 128 SDCMRRHIEVRLLEGSVMRCPHYRCKTTLKFGGCINLLTPKIREMWQQRIKEDLIPVTGR 187

Query: 139 LNCPFKDCGAAIIDEGGEEGVTAVE------CGSCWRLFCAECRVGWHGEMECGEFQRLR 198
           + CP   C A + +   E  ++  E      C  C ++FC +C+V WH  + C ++++L 
Sbjct: 188 IYCPNSRCSALMSET--ELSISTKEDEVRRCCFKCGQIFCIKCKVSWHSNLSCNDYKKLN 247

Query: 199 KEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSDFCYSCGAKWGG 252
                   ++D     LA  K+WR+C  C+  +E + GCV + CRCG  FCY CG + GG
Sbjct: 248 PYP----TENDGKIKALANQKRWRQCGKCQHMIELSKGCVQVKCRCGHKFCYRCGVQAGG 298

[Close]
BLAST of CSPI03G28560 vs. NCBI nr
Match: gi|778682494|ref|XP_004144476.2| (PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Cucumis sativus])

HSP 1 Score: 558.5 bits (1438), Expect = 6.2e-156
Identity = 265/266 (99.62%), Postives = 266/266 (100.00%), Query Frame = 1 

Query: 2   ASSSSSSSILLQNLSDENYAEELQLQEVITSSLLSSPINPSPTPHSSTSQLLCSICTDAK 61
           +SSSSSSSILLQNLSDENYAEELQLQEVITSSLLSSPINPSPTPHSSTSQLLCSICTDAK
Sbjct: 4   SSSSSSSSILLQNLSDENYAEELQLQEVITSSLLSSPINPSPTPHSSTSQLLCSICTDAK 63

Query: 62  SHSQMFTNRVCTHTFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLE 121
           SHSQMFTNRVCTHTFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLE
Sbjct: 64  SHSQMFTNRVCTHTFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLE 123

Query: 122 RWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHGE 181
           RWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHGE
Sbjct: 124 RWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHGE 183

Query: 182 MECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSDF 241
           MECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSDF
Sbjct: 184 MECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSDF 243

Query: 242 CYSCGAKWGGGHACKASAYERTVYRR 268
           CYSCGAKWGGGHACKASAYERTVYRR
Sbjct: 244 CYSCGAKWGGGHACKASAYERTVYRR 269

[Close]
BLAST of CSPI03G28560 vs. NCBI nr
Match: gi|659120762|ref|XP_008460341.1| (PREDICTED: E3 ubiquitin-protein ligase RNF144B-like [Cucumis melo])

HSP 1 Score: 507.3 bits (1305), Expect = 1.6e-140
Identity = 241/268 (89.93%), Postives = 251/268 (93.66%), Query Frame = 1 

Query: 4   SSSSSSILLQNLSDENYAEELQLQEVITSSLLSSPI----NPSPTPHSSTSQLLCSICTD 63
           +S SSSI   +LSDENYAEELQLQEVITSSLLS PI    +PSPTPHSSTSQ+LCSICTD
Sbjct: 2   ASPSSSIFQHHLSDENYAEELQLQEVITSSLLSPPIKIPIHPSPTPHSSTSQVLCSICTD 61

Query: 64  AKSHSQMFTNRVCTHTFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRV 123
           AKSHSQMFTNRVCTHTFCT CIS HIAAKLEV MAVKCPEPNCGTVLEPEMCGSFVPKRV
Sbjct: 62  AKSHSQMFTNRVCTHTFCTDCISKHIAAKLEVTMAVKCPEPNCGTVLEPEMCGSFVPKRV 121

Query: 124 LERWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWH 183
           LERWADALFEAMILK KRLNCPFKDCGAA+IDEG EEGVTAVECGSCWRLFCAECRVGWH
Sbjct: 122 LERWADALFEAMILKSKRLNCPFKDCGAAMIDEGDEEGVTAVECGSCWRLFCAECRVGWH 181

Query: 184 GEMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGS 243
           GEM+CGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHI+CRCGS
Sbjct: 182 GEMKCGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHILCRCGS 241

Query: 244 DFCYSCGAKWGGGHACKASAYERTVYRR 268
           +FCYSCG KWGG HAC+ SAYERTV+RR
Sbjct: 242 EFCYSCGGKWGGAHACRGSAYERTVHRR 269

[Close]
BLAST of CSPI03G28560 vs. NCBI nr
Match: gi|470140100|ref|XP_004305782.1| (PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Fragaria vesca subsp. vesca])

HSP 1 Score: 251.1 bits (640), Expect = 2.1e-63
Identity = 123/255 (48.24%), Postives = 160/255 (62.75%), Query Frame = 1 

Query: 15  LSDENYAEELQLQEVITSSLLSSPINPSP-------TP------HSSTSQLLCSICTDAK 74
           + DE YA+ELQLQE + SS +SS   P         TP       SS S   C IC D K
Sbjct: 37  ICDEKYAQELQLQEALMSSAISSSKVPISIDQFEVKTPFEILRGQSSGSGSFCMICMDVK 96

Query: 75  SHSQMFTNRVCTHTFCTACISNHIAAKLEVAMA-VKCPEPNCGTVLEPEMCGSFVPKRVL 134
              +MFTN  C H+FCT CI  ++A K++  ++ VKCP+  C  VLEP+ C SF+P++V 
Sbjct: 97  PSGEMFTNNSCNHSFCTDCIGRYVATKIQENISMVKCPDVKCKEVLEPQSCRSFIPQQVF 156

Query: 135 ERWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHG 194
           ERW  AL E++ L   R  CPFKDC   ++D+GGE  VT  EC +C RLFCA+CRV WH 
Sbjct: 157 ERWESALCESLFLASDRFYCPFKDCSMMLVDDGGEV-VTVSECPNCRRLFCAQCRVVWHA 216

Query: 195 EMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSD 254
            ++C EFQ+L K+      ++D M ++LA  K+WRRCP CK YVEKT GC HI CRCG +
Sbjct: 217 GIDCSEFQQLSKD---ERGREDIMVMELAHQKQWRRCPRCKFYVEKTAGCSHITCRCGFE 276

Query: 255 FCYSCGAKWGGGHAC 256
           FCY CG+ +G  + C
Sbjct: 277 FCYGCGSNYGHCNGC 287

[Close]
BLAST of CSPI03G28560 vs. NCBI nr
Match: gi|449447781|ref|XP_004141646.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI3 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 4.7e-63
Identity = 119/216 (55.09%), Postives = 147/216 (68.06%), Query Frame = 1 

Query: 54  CSICTDAKSHSQMFTNRVCTHTFCTACISNHIAAKLEVAMA-VKCPEPNCGTVLEPEMCG 113
           C+ICTD K+   MFTN  C+H+FC  CISNHIAAKLE  +A VKCP+P C  VL P++C 
Sbjct: 11  CNICTDDKALVNMFTNHECSHSFCKDCISNHIAAKLEDNIANVKCPQPGCEAVLHPDVCH 70

Query: 114 SFVPKRVLERWADALFEAMILKWKRL-NCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFC 173
           SFVPK VL+RW   L EA IL   RL  CPF DC  A+ID+G +E     EC  C R+FC
Sbjct: 71  SFVPKNVLDRWGYVLCEAFILGNHRLIYCPFMDCSVALIDDG-DEATKEAECPGCNRMFC 130

Query: 174 AECRVGWHGEMECGEFQRLRKEAGVSGDKDD-AMTVKLAENKKWRRCPHCKIYVEKTVGC 233
           A+C V WHG +EC EFQ+L  E     ++DD  + +KLAE + W+RCPHC+ YVE   GC
Sbjct: 131 AKCNVVWHGGVECEEFQKLCLE---EKERDDHLLAIKLAEQENWKRCPHCRTYVEMIEGC 190

Query: 234 VHIVCRCGSDFCYSCGAKWGGGHACKASAYERTVYR 267
            +I+CRC + FCYSCGAKWGG HAC  SA  R  ++
Sbjct: 191 PYIICRCRTKFCYSCGAKWGGSHACPESAEARKYHK 222

[Close]
BLAST of CSPI03G28560 vs. NCBI nr
Match: gi|645244228|ref|XP_008228334.1| (PREDICTED: E3 ubiquitin-protein ligase RNF144B [Prunus mume])

HSP 1 Score: 243.0 bits (619), Expect = 5.8e-61
Identity = 120/270 (44.44%), Postives = 165/270 (61.11%), Query Frame = 1 

Query: 15  LSDENYAEELQLQEVITSSLLSS---PINPSP--------TPHSS----------TSQLL 74
           +SDE YA+ELQLQE + SS++SS    I+  P        TP             +S+  
Sbjct: 31  ISDEKYAQELQLQEALMSSVISSITPKISTQPPNREEDVETPMKKQKGKEKETGQSSETF 90

Query: 75  CSICTDAKSHSQMFTNRVCTHTFCTACISNHIAAKLEVAMA-VKCPEPNCGTVLEPEMCG 134
           C IC D KS  +MFTN  C H+FCT CI  ++  K++  ++ VKCP+  C  VLEP+ C 
Sbjct: 91  CLICMDVKSTQEMFTNSGCNHSFCTDCIGTYVGTKIQENISMVKCPDVKCKEVLEPQSCR 150

Query: 135 SFVPKRVLERWADALFEAMILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCA 194
           S +PK V +RW +AL E+++L  ++  CPFKDC A ++D+G  E VT  EC +C RLFCA
Sbjct: 151 SIIPKEVFDRWENALCESLVLGSQKFYCPFKDCSALLVDDG--EVVTVSECPNCRRLFCA 210

Query: 195 ECRVGWHGEMECGEFQRLRKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVH 254
           +C+V WH  ++CGEFQ L +      +K+D M ++LA+ K WRRCP C  +VEKT GC+H
Sbjct: 211 QCKVAWHAGIDCGEFQILNEN---EREKEDIMVMELAKKKNWRRCPRCNFFVEKTDGCLH 270

Query: 255 IVCRCGSDFCYSCGAKWG----GGHACKAS 259
           I CRCG +FCY CG+ W       H C  +
Sbjct: 271 ITCRCGLEFCYGCGSYWPHSQFSSHVCSTA 295

The following BLAST results are available for this feature:
BLAST of CSPI03G28560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R144A_XENTR1.0e-1728.00Probable E3 ubiquitin-protein ligase RNF144A OS=Xenopus tropicalis GN=rnf144a PE... [more]
R144B_MOUSE2.5e-1628.00E3 ubiquitin-protein ligase RNF144B OS=Mus musculus GN=Rnf144b PE=2 SV=2[more]
R1441_DANRE2.5e-1627.67Probable E3 ubiquitin-protein ligase RNF144A-A OS=Danio rerio GN=rnf144aa PE=3 S... [more]
R144A_HUMAN3.3e-1627.32E3 ubiquitin-protein ligase RNF144A OS=Homo sapiens GN=RNF144A PE=1 SV=2[more]
DEAHB_ARATH2.8e-1525.13ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana GN=At4g... [more]
BLAST of CSPI03G28560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L952_CUCSA4.3e-15699.62Uncharacterized protein OS=Cucumis sativus GN=Csa_3G646570 PE=4 SV=1[more]
A0A0A0KSV5_CUCSA3.3e-6355.09Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650600 PE=4 SV=1[more]
I1KHH9_SOYBN6.9e-6145.08Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
V4LDP4_EUTSA6.9e-6143.02Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10022329mg PE=4 SV=1[more]
A0A118JYS3_CYNCS6.9e-6149.21Zinc finger, C6HC-type OS=Cynara cardunculus var. scolymus GN=Ccrd_023885 PE=4 S... [more]
BLAST of CSPI03G28560 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G14250.12.8e-6142.11 RING/U-box superfamily protein[more]
AT3G53690.12.9e-5043.28 RING/U-box superfamily protein[more]
AT5G60250.13.4e-3531.64 zinc finger (C3HC4-type RING finger) family protein[more]
AT5G37560.13.4e-3530.04 RING/U-box superfamily protein[more]
AT3G45540.11.2e-3230.42 RING/U-box protein with C6HC-type zinc finger[more]
BLAST of CSPI03G28560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778682494|ref|XP_004144476.2|6.2e-15699.62PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Cucumis sativus][more]
gi|659120762|ref|XP_008460341.1|1.6e-14089.93PREDICTED: E3 ubiquitin-protein ligase RNF144B-like [Cucumis melo][more]
gi|470140100|ref|XP_004305782.1|2.1e-6348.24PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Fragaria vesca subsp. ve... [more]
gi|449447781|ref|XP_004141646.1|4.7e-6355.09PREDICTED: probable E3 ubiquitin-protein ligase ARI3 [Cucumis sativus][more]
gi|645244228|ref|XP_008228334.1|5.8e-6144.44PREDICTED: E3 ubiquitin-protein ligase RNF144B [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR002867IBR_dom
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G28560.1CSPI03G28560.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 54..98
score: 9
IPR002867IBR domainPFAMPF01485IBRcoord: 124..184
score: 4.0E-10coord: 207..255
score: 3.
IPR002867IBR domainSMARTSM00647ibrneu5coord: 199..255
score: 0.0084coord: 121..184
score: 1.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 51..110
score: 3.
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 72..81
scor
NoneNo IPR availablePANTHERPTHR11685:SF149SUBFAMILY NOT NAMEDcoord: 1..249
score: 8.8
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 49..130
score: 1.38E-14coord: 125..189
score: 3.07E-7coord: 203..256
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G28560Cla012550Watermelon (97103) v1cpiwmB216
CSPI03G28560Csa3G646570Cucumber (Chinese Long) v2cpicuB120
CSPI03G28560MELO3C022695Melon (DHL92) v3.5.1cpimeB202
CSPI03G28560ClCG07G014330Watermelon (Charleston Gray)cpiwcgB262
CSPI03G28560Lsi07G006480Bottle gourd (USVL1VR-Ls)cpilsiB232
CSPI03G28560MELO3C022695.2Melon (DHL92) v3.6.1cpimedB196
CSPI03G28560CsaV3_3G030970Cucumber (Chinese Long) v3cpicucB144
CSPI03G28560Cla97C07G141190Watermelon (97103) v2cpiwmbB248
CSPI03G28560Bhi01G002216Wax gourdcpiwgoB288
CSPI03G28560Cucsa.149270Cucumber (Gy14) v1cgycpiB221
CSPI03G28560CmaCh14G012140Cucurbita maxima (Rimu)cmacpiB245
CSPI03G28560CmoCh01G000200Cucurbita moschata (Rifu)cmocpiB438
CSPI03G28560Cp4.1LG03g14760Cucurbita pepo (Zucchini)cpecpiB603
CSPI03G28560CsGy3G026530Cucumber (Gy14) v2cgybcpiB110
CSPI03G28560Carg06388Silver-seed gourdcarcpiB0130
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G28560Watermelon (97103) v2cpiwmbB264
CSPI03G28560Wax gourdcpiwgoB352
CSPI03G28560Wild cucumber (PI 183967)cpicpiB146
CSPI03G28560Cucumber (Gy14) v1cgycpiB533
CSPI03G28560Cucurbita maxima (Rimu)cmacpiB366
CSPI03G28560Cucurbita maxima (Rimu)cmacpiB450
CSPI03G28560Cucurbita maxima (Rimu)cmacpiB905
CSPI03G28560Cucurbita moschata (Rifu)cmocpiB234
CSPI03G28560Cucurbita moschata (Rifu)cmocpiB357
CSPI03G28560Cucurbita moschata (Rifu)cmocpiB885
CSPI03G28560Cucumber (Chinese Long) v2cpicuB167
CSPI03G28560Melon (DHL92) v3.5.1cpimeB184
CSPI03G28560Watermelon (Charleston Gray)cpiwcgB182
CSPI03G28560Watermelon (97103) v1cpiwmB187
CSPI03G28560Cucurbita pepo (Zucchini)cpecpiB139
CSPI03G28560Cucurbita pepo (Zucchini)cpecpiB314
CSPI03G28560Cucurbita pepo (Zucchini)cpecpiB561
CSPI03G28560Bottle gourd (USVL1VR-Ls)cpilsiB180
CSPI03G28560Melon (DHL92) v3.6.1cpimedB179
CSPI03G28560Cucumber (Gy14) v2cgybcpiB319
CSPI03G28560Silver-seed gourdcarcpiB0230
CSPI03G28560Silver-seed gourdcarcpiB0634
CSPI03G28560Silver-seed gourdcarcpiB0803
CSPI03G28560Cucumber (Chinese Long) v3cpicucB197